Cyclostomata) and the Implications for the Vertebrate Fossil Record Robert S
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Vertebrates (Vertebrata) S. Blair Hedges Vertebrates are treated here as a separate phylum Department of Biology, 208 Mueller Laboratory, Pennsylvania State rather than a subphylum of Chordata. 7 e morpho- University, University Park, PA 16802-5301, USA ([email protected]) logical disparity among the chordates (urochordates, cepahalochordates, and vertebrates), and their deep time of separation based on molecular clocks (5) is as great Abstract as that among other groups of related animal phyla (e.g., The vertebrates (~58,000 sp.) comprise a phylum of mostly arthropods, tardigrades, and onycophorans). 7 e phyl- mobile, predatory animals. The evolution of jaws and ogeny of the lineages covered here is uncontroversial, for limbs were key traits that led to subsequent diversifi cation. the most part. Evidence from nuclear genes and morph- Atmospheric oxygen change appears to have played a major ology (1, 2, 6, 7) agree in the backbone phylogeny of ver- role, with an initial rise in the late Precambrian (~580–542 tebrates represented by these nested groups: Tetrapoda million years ago, Ma) permitting larger body size, followed (Lissamphibia, Amniota), Sarcopterygii (Actinistia, by two Paleozoic pulses affecting prey. The First Pulse Dipnoi, Tetrapoda), Osteichthyes (Actinopterygii, (~430–390 Ma) brought fi shes to brackish and freshwater Sarcopterygii), and Gnathostomata (Chondrichthyes, environments where they diversifi ed, with one lineage giv- Osteichthyes). ing rise to tetrapods. The Second Pulse (~340–250 Ma) led to Cyclostomata wa s or ig i na l ly considered a ba sa l, mono- a Permo-Carboniferous explosion of tetrapods, adapting to phyletic group based on morphology (8), but later mor- diverse terrestrial niches. -
PALEONTOLOGICAL TECHNICAL REPORT: 6Th AVENUE and WADSWORTH BOULEVARD INTERCHANGE PHASE II ENVIRONMENTAL ASSESSMENT, CITY of LAKEWOOD, JEFFERSON COUNTY, COLORADO
PALEONTOLOGICAL TECHNICAL REPORT: 6th AVENUE AND WADSWORTH BOULEVARD INTERCHANGE PHASE II ENVIRONMENTAL ASSESSMENT, CITY OF LAKEWOOD, JEFFERSON COUNTY, COLORADO Prepared for: TEC Inc. 1746 Cole Boulevard, Suite 265 Golden, CO 80401 Prepared by: Paul C. Murphey, Ph.D. and David Daitch M.S. Rocky Mountain Paleontology 4614 Lonespur Court Oceanside, CA 92056 303-514-1095; 760-758-4019 www.rockymountainpaleontology.com Prepared under State of Colorado Paleontological Permit 2007-33 January, 2007 TABLE OF CONTENTS 1.0 SUMMARY............................................................................................................................. 3 2.0 INTRODUCTION ................................................................................................................... 4 2.1 DEFINITION AND SIGNIFICANCE OF PALEONTOLOGICAL RESOURCES........... 4 3.0 METHODS .............................................................................................................................. 6 4.0. LAWS, ORDINANCES, REGULATIONS AND STANDARDS......................................... 7 4.1. Federal................................................................................................................................. 7 4.2. State..................................................................................................................................... 8 4.3. County................................................................................................................................. 8 4.4. City..................................................................................................................................... -
Phylum Arthropod Silvia Rondon, and Mary Corp, OSU Extension Entomologist and Agronomist, Respectively Hermiston Research and Extension Center, Hermiston, Oregon
Phylum Arthropod Silvia Rondon, and Mary Corp, OSU Extension Entomologist and Agronomist, respectively Hermiston Research and Extension Center, Hermiston, Oregon Member of the Phyllum Arthropoda can be found in the seas, in fresh water, on land, or even flying freely; a group with amazing differences of structure, and so abundant that all the other animals taken together are less than 1/6 as many as the arthropods. Well-known members of this group are the Kingdom lobsters, crayfish and crabs; scorpions, spiders, mites, ticks, Phylum Phylum Phylum Class the centipedes and millipedes; and last, but not least, the Order most abundant of all, the insects. Family Genus The Phylum Arthropods consist of the following Species classes: arachnids, chilopods, diplopods, crustaceans and hexapods (insects). All arthropods possess: • Exoskeleton. A hard protective covering around the outside of the body (divided by sutures into plates called sclerites). An insect's exoskeleton (integument) serves as a protective covering over the body, but also as a surface for muscle attachment, a water-tight barrier against desiccation, and a sensory interface with the environment. It is a multi-layered structure with four functional regions: epicuticle (top layer), procuticle, epidermis, and basement membrane. • Segmented body • Jointed limbs and jointed mouthparts that allow extensive specialization • Bilateral symmetry, whereby a central line can divide the body Insect molting or removing its into two identical halves, left and right exoesqueleton • Ventral nerve -
Fishes Scales & Tails Scale Types 1
Phylum Chordata SUBPHYLUM VERTEBRATA Metameric chordates Linear series of cartilaginous or boney support (vertebrae) surrounding or replacing the notochord Expanded anterior portion of nervous system THE FISHES SCALES & TAILS SCALE TYPES 1. COSMOID (most primitive) First found on ostracaderm agnathans, thick & boney - composed of: Ganoine (enamel outer layer) Cosmine (thick under layer) Spongy bone Lamellar bone Perhaps selected for protection against eurypterids, but decreased flexibility 2. GANOID (primitive, still found on some living fish like gar) 3. PLACOID (old scale type found on the chondrichthyes) Dentine, tooth-like 4. CYCLOID (more recent scale type, found in modern osteichthyes) 5. CTENOID (most modern scale type, found in modern osteichthyes) TAILS HETEROCERCAL (primitive, still found on chondrichthyes) ABBREVIATED HETEROCERCAL (found on some primitive living fish like gar) DIPHYCERCAL (primitive, found on sarcopterygii) HOMOCERCAL (most modern, found on most modern osteichthyes) Agnatha (class) [connect the taxa] Cyclostomata (order) Placodermi Acanthodii (class) (class) Chondrichthyes (class) Osteichthyes (class) Actinopterygii (subclass) Sarcopterygii (subclass) Dipnoi (order) Crossopterygii (order) Ripidistia (suborder) Coelacanthiformes (suborder) Chondrostei (infra class) Holostei (infra class) Teleostei (infra class) CLASS AGNATHA ("without jaws") Most primitive - first fossils in Ordovician Bottom feeders, dorsal/ventral flattened Cosmoid scales (Ostracoderms) Pair of eyes + pineal eye - present in a few living fish and reptiles - regulates circadian rhythms Nine - seven gill pouches No paired appendages, medial nosril ORDER CYCLOSTOMATA (60 spp) Last living representatives - lampreys & hagfish Notochord not replaced by vertebrae Cartilaginous cranium, scaleless body Sea lamprey predaceous - horny teeth in buccal cavity & on tongue - secretes anti-coaggulant Lateral Line System No stomach or spleen 5 - 7 year life span - adults move into freshwater streams, spawn, & die. -
Vertebrates and Invertebrates
Vertebrates and invertebrates The animal kingdom is divided into two groups: vertebrates and invertebrates. Vertebrates have been around for millions of years but have evolved and changed over time. The word vertebrate means “having a backbone." Many animals have backbones. You have a backbone. So does a cow, a whale, a fish, a frog, and a bird. Vertebrates are animals that have a backbone. Most animals have a backbone that is made of bones joined together to form a skeleton. Our skeleton gives us our shape and allows us to move. Mammals, fish, birds, reptiles, and amphibians have Vertebrae backbones so they are all vertebrates. Each bone that makes up the backbone Scientists classify vertebrates into five classes: is called a vertebra. These are the • Mammals building blacks that form the backbone, • Fish also known as the spinal cord. The • Birds vertebrae protect and support your • Reptiles spine. Without a backbone, you would not • Amphibians be able to move any part of your body. Animals without a backbone are called invertebrates. Most The human animals are invertebrates. In fact, 95% of all living creatures backbone has 26 on Earth are invertebrates. vertebrae. Arthropods are the largest group of invertebrates. Insects make up a large part of this group. All insects, such as ladybugs, ants, grasshoppers, and bumblebees have three body sections and six legs. Most arthropods live on land, but some of these fascinating creatures live in water. Lobsters, crabs, and shrimp are arthropods that live in the oceans. Many invertebrates have skeletons on the outside of their A frog only has bodies called exoskeletons. -
Introduction to Phylum Chordata
Unifying Themes 1. Chordate evolution is a history of innovations that is built upon major invertebrate traits •bilateral symmetry •cephalization •segmentation •coelom or "gut" tube 2. Chordate evolution is marked by physical and behavioral specializations • For example the forelimb of mammals has a wide range of structural variation, specialized by natural selection 3. Evolutionary innovations and specializations led to adaptive radiations - the development of a variety of forms from a single ancestral group Characteristics of the Chordates 1. Notochord 2. dorsal hollow nerve cord 3. pharyngeal gill slits 4. postanal tail 5. endostyle Characteristics of the Chordates Notochord •stiff, flexible rod, provides internal support • Remains throughout the life of most invertebrate chordates • only in the embryos of vertebrate chordates Characteristics of the Chordates cont. Dorsal Hollow Nerve Cord (Spinal Cord) •fluid-filled tube of nerve tissue, runs the length of the animal, just dorsal to the notochord • Present in chordates throughout embryonic and adult life Characteristics of the Chordates cont. Pharyngeal gill slits • Pairs of opening through the pharynx • Invertebrate chordates use them to filter food •In fishes the gill sits develop into true gills • In reptiles, birds, and mammals the gill slits are vestiges (occurring only in the embryo) Characteristics of the Chordates cont. Endostyle • mucous secreting structure found in the pharynx floor (traps small food particles) Characteristics of the Chordates cont. Postanal Tail • works with muscles (myomeres) & notochord to provide motility & stability • Aids in propulsion in nonvertebrates & fish but vestigial in later lineages SubPhylum Urochordata Ex: tunicates or sea squirts • Sessile as adults, but motile during the larval stages • Possess all 5 chordate characteristics as larvae • Settle head first on hard substrates and undergo a dramatic metamorphosis • tail, notochord, muscle segments, and nerve cord disappear SubPhylum Urochordata cont. -
Conserved Keratin Gene Clusters in Ancient Fish: an Evolutionary Seed for Terrestrial Adaptation
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.06.063123; this version posted October 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Conserved Keratin Gene Clusters in Ancient Fish: an Evolutionary Seed for Terrestrial Adaptation Yuki Kimura1 and Masato Nikaido*,1 1 School of Life Science and Technology, Tokyo Institute of Technology * Corresponding author: E-mail: [email protected] Keywords: Gene cluster; Keratin; Vertebrate evolution; Comparative genomics; Phylogenetics; Selection analysis; Synteny analysis Highlights Two major keratin clusters are conserved from sharks to terrestrial vertebrates. Adult epidermis-specific keratins in amphibians stem from the two major clusters. A novel keratin gene subcluster was found in reedfish. Ancestral krt18/krt8 gene sets were found in all vertebrates. Functional diversification signatures were found in reedfish and amphibian keratins. 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.06.063123; this version posted October 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Type I and type II keratins are subgroups of intermediate filament proteins that provide toughness to the epidermis and protect it from water loss. In terrestrial vertebrates, the keratin genes form two major clusters, clusters 1 and 2, each of which is dominated by type I and II keratin genes. -
Fins, Limbs, and Tails: Outgrowths and Axial Patterning in Vertebrate Evolution Michael I
Review articles Fins, limbs, and tails: outgrowths and axial patterning in vertebrate evolution Michael I. Coates1* and Martin J. Cohn2 Summary Current phylogenies show that paired fins and limbs are unique to jawed verte- brates and their immediate ancestry. Such fins evolved first as a single pair extending from an anterior location, and later stabilized as two pairs at pectoral and pelvic levels. Fin number, identity, and position are therefore key issues in vertebrate developmental evolution. Localization of the AP levels at which develop- mental signals initiate outgrowth from the body wall may be determined by Hox gene expression patterns along the lateral plate mesoderm. This regionalization appears to be regulated independently of that in the paraxial mesoderm and axial skeleton. When combined with current hypotheses of Hox gene phylogenetic and functional diversity, these data suggest a new model of fin/limb developmental evolution. This coordinates body wall regions of outgrowth with primitive bound- aries established in the gut, as well as the fundamental nonequivalence of pectoral and pelvic structures. BioEssays 20:371–381, 1998. 1998 John Wiley & Sons, Inc. Introduction over and again to exemplify fundamental concepts in biological Vertebrate appendages include an amazing diversity of form, theory. The striking uniformity of teleost pectoral fin skeletons from the huge wing-like fins of manta rays or the stumpy limbs of illustrated Geoffroy Saint-Hilair’s discussion of ‘‘special analo- frogfishes, to ichthyosaur paddles, the extraordinary fingers of gies,’’1 while tetrapod limbs exemplified Owen’s2 related concept aye-ayes, and the fin-like wings of penguins. The functional of ‘‘homology’’; Darwin3 then employed precisely the same ex- diversity of these appendages is similarly vast and, in addition to ample as evidence of evolutionary descent from common ances- various modes of locomotion, fins and limbs are also used for try. -
Copyrighted Material
06_250317 part1-3.qxd 12/13/05 7:32 PM Page 15 Phylum Chordata Chordates are placed in the superphylum Deuterostomia. The possible rela- tionships of the chordates and deuterostomes to other metazoans are dis- cussed in Halanych (2004). He restricts the taxon of deuterostomes to the chordates and their proposed immediate sister group, a taxon comprising the hemichordates, echinoderms, and the wormlike Xenoturbella. The phylum Chordata has been used by most recent workers to encompass members of the subphyla Urochordata (tunicates or sea-squirts), Cephalochordata (lancelets), and Craniata (fishes, amphibians, reptiles, birds, and mammals). The Cephalochordata and Craniata form a mono- phyletic group (e.g., Cameron et al., 2000; Halanych, 2004). Much disagree- ment exists concerning the interrelationships and classification of the Chordata, and the inclusion of the urochordates as sister to the cephalochor- dates and craniates is not as broadly held as the sister-group relationship of cephalochordates and craniates (Halanych, 2004). Many excitingCOPYRIGHTED fossil finds in recent years MATERIAL reveal what the first fishes may have looked like, and these finds push the fossil record of fishes back into the early Cambrian, far further back than previously known. There is still much difference of opinion on the phylogenetic position of these new Cambrian species, and many new discoveries and changes in early fish systematics may be expected over the next decade. As noted by Halanych (2004), D.-G. (D.) Shu and collaborators have discovered fossil ascidians (e.g., Cheungkongella), cephalochordate-like yunnanozoans (Haikouella and Yunnanozoon), and jaw- less craniates (Myllokunmingia, and its junior synonym Haikouichthys) over the 15 06_250317 part1-3.qxd 12/13/05 7:32 PM Page 16 16 Fishes of the World last few years that push the origins of these three major taxa at least into the Lower Cambrian (approximately 530–540 million years ago). -
Testing the Quality of the Fossil Record by Groups and by Major Habitats
Histo-icalBiology, 1996, Vol 12,pp I 1I-157 © 1996 OPA (Overseas Publishers Association) Reprints available directly from the publisher Amsterdam B V Published in The Netherlands Photocopying available by license only By Harwood Academic Publishers GmbH Printed in Malaysia TESTING THE QUALITY OF THE FOSSIL RECORD BY GROUPS AND BY MAJOR HABITATS MICHAEL J BENTON and REBECCA HITCHIN Department of Geology, University of Bristol, Bristol, B 58 IRJ, United Kingdom (Received February 9 1996; in final form March 25, 1996) The evolution of life is a form of history and, as Karl Popper pointed out, that makes much of palaeontology and evolutionary biology metaphysical and not scientific, since direct testing is not possible: history cannot be re-run However, it is possible to cross-compare three sources of data on phylogeny stratigraphic, cladistic, and molecular Three metrics for comparing cladograms with stratigraphic information allow cross-testing of () the order of branching with the stratigraphic order of fossils, and of (2) the relative amount of cladistically-implied gap in proportion to known fossil record. Results of the metrics, based upon a data set of 376 cladograms, show that there are statistically significant differences in the results for echinoderms, fishes, and tetrapods Matching of rank- order data on stratigraphic age of first appearances and branching points in cladograms, using Spearman Rank Correlation (SRC), is poorer than reported before, with only 148 of the 376 cladograms tested (39 %) showing statistically significant matching Tests of the relative amount of cladistically-implied gap, using the Relative Completeness Index (RCI), indicated excellent results, with 288 of the cladograms tested (77 %) having records more than 50% complete. -
Jawless Fishes of the World
Jawless Fishes of the World Jawless Fishes of the World: Volume 1 Edited by Alexei Orlov and Richard Beamish Jawless Fishes of the World: Volume 1 Edited by Alexei Orlov and Richard Beamish This book first published 2016 Cambridge Scholars Publishing Lady Stephenson Library, Newcastle upon Tyne, NE6 2PA, UK British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Copyright © 2016 by Alexei Orlov, Richard Beamish and contributors All rights for this book reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the copyright owner. ISBN (10): 1-4438-8582-7 ISBN (13): 978-1-4438-8582-9 TABLE OF CONTENTS Volume 1 Preface ........................................................................................................ ix M. Docker Part 1: Evolution, Phylogeny, Diversity, and Taxonomy Chapter One ................................................................................................. 2 Molecular Evolution in the Lamprey Genomes and Its Relevance to the Timing of Whole Genome Duplications T. Manousaki, H. Qiu, M. Noro, F. Hildebrand, A. Meyer and S. Kuraku Chapter Two .............................................................................................. 17 Molecular Phylogeny and Speciation of East Asian Lampreys (genus Lethenteron) with reference to their Life-History Diversification Y. Yamazaki and -
Vertebrates in the Animal Kingdom
Science Enhanced Scope and Sequence – Grade 5 Vertebrates in the Animal Kingdom Strand Living Systems Topic Investigating characteristics of organisms Primary SOL 5.5 The student will investigate and understand that organisms are made of one or more cells and have distinguishing characteristics that play a vital role in the organism’s ability to survive and thrive in its environment. Key concepts include b) classification of organisms using physical characteristics, body structures, and behavior of the organism; c) traits of organisms that allow them to survive in their environment. Related SOL 5.1 The student will demonstrate an understanding of scientific reasoning, logic, and the nature of science by planning and conducting investigations in which a) items such as rocks, minerals, and organisms are identified using various classification keys. Background Information To study organisms, scientists first look at their characteristics and group the organisms based on the characteristics they share. Some animals are so small that they live on or inside other animals. Others, such as the giant squid, are many meters long and live in the depths of oceans. Animals can swim, crawl, burrow, fly, or not move at all. No matter what their size, where they live, or how they move, all animals must have some basic characteristics in common. All organisms in the animal kingdom (1)) are made of cells, (2 reproduce, (3) grow and develop, (4) have a life cycle, (5) obtain and use energy, and (6) responds and adapt to their environment. In the 18th century, a Swedish scientist named Carolus Linnaeus developed a system to organize living things.