Retrograde Bilin Signaling Enables Chlamydomonas Greening and Phototrophic Survival
Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival Deqiang Duanmua, David Caserob,c, Rachel M. Dentd, Sean Gallahere, Wenqiang Yangf, Nathan C. Rockwella, Shelley S. Martina, Matteo Pellegrinib,c, Krishna K. Niyogid,g,h, Sabeeha S. Merchantb,e, Arthur R. Grossmanf, and J. Clark Lagariasa,1 aDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616; bInstitute for Genomics and Proteomics, cDepartment of Molecular, Cell and Developmental Biology, and eDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095; dDepartment of Plant and Microbial Biology, gHoward Hughes Medical Institute, and hPhysical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720; and fDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305 Contributed by J. Clark Lagarias, December 20, 2012 (sent for review October 30, 2012) The maintenance of functional chloroplasts in photosynthetic share similar mechanisms for light sensing and retrograde sig- eukaryotes requires real-time coordination of the nuclear and naling. However, many chlorophyte genomes lack phytochromes plastid genomes. Tetrapyrroles play a significant role in plastid-to- (21–24), a deficiency offset by a larger complement of flavin- and nucleus retrograde signaling in plants to ensure that nuclear gene retinal-based sensors (25–30). expression is attuned to the needs of the chloroplast. Well-known Despite the absence of phytochromes, all known chlorophyte sites of synthesis of chlorophyll for photosynthesis, plant chlor- genomes retain cyanobacterial-derived genes for the two key oplasts also export heme and heme-derived linear tetrapyrroles enzymes required for bilin biosynthesis (Fig. 1A): a heme oxygen- (bilins), two critical metabolites respectively required for essential ase (HMOX1) and a ferredoxin-dependent bilin reductase (PCYA).
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