Targeting Hepatic Protein Carbonylation and Oxidative Stress Occurring on Diet-Induced Metabolic Diseases Through the Supplementation with Fish Oils
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Chloroplast-Derived Photo-Oxidative Stress Causes Changes in H2O2 And
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.20.212670; this version posted July 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Short title: 2 Transmission of ROS signals from chloroplasts 3 Corresponding authors: 4 Andreas J. Meyer 5 Institute of Crop Science and Resource Conservation (INRES), Chemical Signalling, 6 University of Bonn 7 Friedrich-Ebert-Allee 144, D-53113 Bonn, Germany 8 Phone: +49 228 73 60353 9 Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.20.212670; this version posted July 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 10 Chloroplast-derived photo-oxidative stress causes changes in H2O2 and 11 EGSH in other subcellular compartments 12 Authors: 13 José Manuel Ugalde1, Philippe Fuchs1,2, Thomas Nietzel2, Edoardo A. Cutolo4, Ute C. 14 Vothknecht4, Loreto Holuigue3, Markus Schwarzländer2, Stefanie J. Müller-Schüssele1, 15 Andreas J. Meyer1,* 16 1 Institute of Crop Science and Resource Conservation (INRES), University of Bonn, 17 Friedrich-Ebert-Allee 144, D-53113 Bonn, Germany 18 2 Institute of Plant Biology and Biotechnology, University of Münster, Schlossplatz 8, D- 19 48143 Münster, Germany 20 3 Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, 21 Pontificia Universidad Católica de Chile, Avda. -
Alternative Acetate Production Pathways in Chlamydomonas Reinhardtii During Dark Anoxia and the Dominant Role of Chloroplasts in Fermentative Acetate Productionw
This article is a Plant Cell Advance Online Publication. The date of its first appearance online is the official date of publication. The article has been edited and the authors have corrected proofs, but minor changes could be made before the final version is published. Posting this version online reduces the time to publication by several weeks. Alternative Acetate Production Pathways in Chlamydomonas reinhardtii during Dark Anoxia and the Dominant Role of Chloroplasts in Fermentative Acetate ProductionW Wenqiang Yang,a,1 Claudia Catalanotti,a Sarah D’Adamo,b Tyler M. Wittkopp,a,c Cheryl J. Ingram-Smith,d Luke Mackinder,a Tarryn E. Miller,b Adam L. Heuberger,e Graham Peers,f Kerry S. Smith,d Martin C. Jonikas,a Arthur R. Grossman,a and Matthew C. Posewitzb a Carnegie Institution for Science, Department of Plant Biology, Stanford, California 94305 b Colorado School of Mines, Department of Chemistry and Geochemistry, Golden, Colorado 80401 c Stanford University, Department of Biology, Stanford, California 94305 d Clemson University, Department of Genetics and Biochemistry, Clemson, South Carolina 29634 e Colorado State University, Proteomics and Metabolomics Facility, Fort Collins, Colorado 80523 f Colorado State University, Department of Biology, Fort Collins, Colorado 80523 ORCID ID: 0000-0001-5600-4076 (W.Y.) Chlamydomonas reinhardtii insertion mutants disrupted for genes encoding acetate kinases (EC 2.7.2.1) (ACK1 and ACK2) and a phosphate acetyltransferase (EC 2.3.1.8) (PAT2, but not PAT1) were isolated to characterize fermentative acetate production. ACK1 and PAT2 were localized to chloroplasts, while ACK2 and PAT1 were shown to be in mitochondria. -
The Aldehyde Dehydrogenase ALDH2*2 Allele Exhibits Dominance Over ALDH2*1 in Transduced Hela Cells
The aldehyde dehydrogenase ALDH2*2 allele exhibits dominance over ALDH2*1 in transduced HeLa cells. Q Xiao, … , T Johnston, D W Crabb J Clin Invest. 1995;96(5):2180-2186. https://doi.org/10.1172/JCI118272. Research Article Individuals heterozygous or homozygous for the variant aldehyde dehydrogenase (ALDH2) allele (ALDH2*2), which encodes a protein differing only at residue 487 from the normal protein, have decreased ALDH2 activity in liver extracts and experience cutaneous flushing when they drink alcohol. The mechanisms by which this allele exerts its dominant effect is unknown. To study this effect, the human ALDH2*1 cDNA was cloned and the ALDH2*2 allele was generated by site-directed mutagenesis. These cDNAs were transduced using retroviral vectors into HeLa and CV1 cells, which do not express ALDH2. The normal allele directed synthesis of immunoreactive ALDH2 protein (ALDH2E) with the expected isoelectric point. Extracts of these cells contained increased aldehyde dehydrogenase activity with low Km for the aldehyde substrate. The ALDH2*2 allele directed synthesis of mRNA and immunoreactive protein (ALDH2K), but the protein lacked enzymatic activity. When ALDH2*1-expressing cells were transduced with ALDH2*2 vectors, both mRNAs were expressed and immunoreactive proteins with isoelectric points ranging between those of ALDH2E and ALDH2K were present, indicating that the subunits formed heteromers. ALDH2 activity in these cells was reduced below that of the parental ALDH2*1-expressing cells. Thus, the ALDH2*2 allele is sufficient to cause ALDH2 deficiency in vitro. Find the latest version: https://jci.me/118272/pdf The Aldehyde Dehydrogenase ALDH2*2 Allele Exhibits Dominance over ALDH2*1 in Transduced HeLa Cells Qing Xiao, * Henry Weiner,* Timothy Johnston,* and David W. -
Combined Treatment of Isoflavone Supplementation and Exercise
Yoon et al. Journal of the International Society of Sports Nutrition 2014, 11:29 http://www.jissn.com/content/11/1/29 RESEARCH ARTICLE Open Access Combined treatment of isoflavone supplementation and exercise restores the changes in hepatic protein expression in ovariectomized rats - a proteomics approach Sun Yoon1, Joomin Lee2 and Seung-Min Lee1* Abstract Background: Postmenopausal women experience adverse physiological changes caused by estrogen deprivation. Here, we hypothesized that the administration of isoflavone, a phytoestrogn, and/or physical exercise could reverse changes in the levels of hepatic enzymes disturbed by loss of estrogen to ameliorate postmenopause-related health problems. Methods: Thirty-week-old female Sprague–Dawley rats were divided into five groups: a sham-operated (SHAM) group, ovariectomized groups on a regular diet with exercise (EXE) and without exercise (OVX), and ovariectomized groups on an isoflavone supplemented diet with (ISO + EXE) and without exercise (ISO). Proteomic tools were employed to identify candidate hepatic proteins that were differentially expressed among the five animal groups. Results: INMT was detected in the SHAM but not in all of the ovariectomized rats. Seven proteins (PPIA, AKR1C3, ALDH2, PSME2, BUCS1, OTC, and GAMT) were identified to have differential expression among the groups. When compared to the SHAM group, the ovariectomy elevated the levels of PPIA, BUCS1, PSME2, AKR1C3, and GAMT while decreasing ALDH2 and OTC. Among these OVX-induced changes, OVX-increased BUCS1 and GAMT levels were noticeably decreased by ISO or EXE and further greatly down-regulated by ISO + EXE. In the case of PSME2, ISO and EXE further increased OVX-upregulated expression levels but ISO + EXE greatly reduced OVX-increased levels. -
Table 2. Significant
Table 2. Significant (Q < 0.05 and |d | > 0.5) transcripts from the meta-analysis Gene Chr Mb Gene Name Affy ProbeSet cDNA_IDs d HAP/LAP d HAP/LAP d d IS Average d Ztest P values Q-value Symbol ID (study #5) 1 2 STS B2m 2 122 beta-2 microglobulin 1452428_a_at AI848245 1.75334941 4 3.2 4 3.2316485 1.07398E-09 5.69E-08 Man2b1 8 84.4 mannosidase 2, alpha B1 1416340_a_at H4049B01 3.75722111 3.87309653 2.1 1.6 2.84852656 5.32443E-07 1.58E-05 1110032A03Rik 9 50.9 RIKEN cDNA 1110032A03 gene 1417211_a_at H4035E05 4 1.66015788 4 1.7 2.82772795 2.94266E-05 0.000527 NA 9 48.5 --- 1456111_at 3.43701477 1.85785922 4 2 2.8237185 9.97969E-08 3.48E-06 Scn4b 9 45.3 Sodium channel, type IV, beta 1434008_at AI844796 3.79536664 1.63774235 3.3 2.3 2.75319499 1.48057E-08 6.21E-07 polypeptide Gadd45gip1 8 84.1 RIKEN cDNA 2310040G17 gene 1417619_at 4 3.38875643 1.4 2 2.69163229 8.84279E-06 0.0001904 BC056474 15 12.1 Mus musculus cDNA clone 1424117_at H3030A06 3.95752801 2.42838452 1.9 2.2 2.62132809 1.3344E-08 5.66E-07 MGC:67360 IMAGE:6823629, complete cds NA 4 153 guanine nucleotide binding protein, 1454696_at -3.46081884 -4 -1.3 -1.6 -2.6026947 8.58458E-05 0.0012617 beta 1 Gnb1 4 153 guanine nucleotide binding protein, 1417432_a_at H3094D02 -3.13334396 -4 -1.6 -1.7 -2.5946297 1.04542E-05 0.0002202 beta 1 Gadd45gip1 8 84.1 RAD23a homolog (S. -
ALDH2) in Escherichia Coli Nissle 1917 for Oral Delivery in ALDH2-Deficient Individuals
bioRxiv preprint doi: https://doi.org/10.1101/674606; this version posted June 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Recombinant Expression of Aldehyde Dehydrogenase 2 (ALDH2) in Escherichia coli Nissle 1917 for Oral Delivery in ALDH2-Deficient Individuals Authors Tim Ho, Catherine Chang, Justin Wu, Iris Huang, Leona Tsai, Justin Lin, Emily Tai, Caroline Chou, Justin Yang, Yvonne Wei, Catherine Yeh, William Chen, Dylan Lu, Charlotte Chou, Longan Su, Nicole Chang, Colin Huang, Chloe Wang, Paul Abrena, Christy Cheung, Cassandra Yeh, Shantih Whiteford, Phoebe Chen, Austin Huang, Aire Wu, Benjamin Wei, Eugene Kao, Nicholas Lin, Anna Chang, Jake Yang, Yasmin Lin, Sean Tsao, Nicholas Ward, Teresa Chiang, Jude Clapper* Taipei American School, Taipei City, Taiwan. *Corresponding author: [email protected] Abstract Turning red after consuming alcohol may seem like a mere social inconvenience. Yet, this flushing response is caused by an accumulation of acetaldehyde, a carcinogenic intermediate of alcohol metabolism. Aldehyde dehydrogenase 2 (ALDH2) deficiency, the result of a point mutation, produces a less efficient ALDH2. The resulting accumulation of acetaldehyde greatly increases the risk of developing esophageal and head and neck cancers. In this study, we produced recombinant ALDH2 in the probiotic E. coli Nissle 1917, which successfully reduces acetaldehyde levels in simulated oral conditions. Packaged in a hard candy, the ALDH2-probiotic would remain in the mouth to specifically target salivary acetaldehyde. Using mathematical modeling, we also determined how much recombinant ALDH2 is needed to reduce elevated acetaldehyde levels. -
Aldehyde Dehydrogenase 2 Activation and Coevolution of Its Εpkc
Nene et al. Journal of Biomedical Science (2017) 24:3 DOI 10.1186/s12929-016-0312-x RESEARCH Open Access Aldehyde dehydrogenase 2 activation and coevolution of its εPKC-mediated phosphorylation sites Aishwarya Nene†, Che-Hong Chen*† , Marie-Hélène Disatnik, Leslie Cruz and Daria Mochly-Rosen Abstract Background: Mitochondrial aldehyde dehydrogenase 2 (ALDH2) is a key enzyme for the metabolism of many toxic aldehydes such as acetaldehyde, derived from alcohol drinking, and 4HNE, an oxidative stress-derived lipid peroxidation aldehyde. Post-translational enhancement of ALDH2 activity can be achieved by serine/threonine phosphorylation by epsilon protein kinase C (εPKC). Elevated ALDH2 is beneficial in reducing injury following myocardial infarction, stroke and other oxidative stress and aldehyde toxicity-related diseases. We have previously identified three εPKC phosphorylation sites, threonine 185 (T185), serine 279 (S279) and threonine 412 (T412), on ALDH2. Here we further characterized the role and contribution of each phosphorylation site to the enhancement of enzymatic activity by εPKC. Methods: Each individual phosphorylation site was mutated to a negatively charged amino acid, glutamate, to mimic a phosphorylation, or to a non-phosphorylatable amino acid, alanine. ALDH2 enzyme activities and protection against 4HNE inactivation were measured in the presence or absence of εPKC phosphorylation in vitro. Coevolution of ALDH2 and its εPKC phosphorylation sites was delineated by multiple sequence alignments among a diverse range of species and within the ALDH multigene family. Results: We identified S279 as a critical εPKC phosphorylation site in the activation of ALDH2. The critical catalytic site, cysteine 302 (C302) of ALDH2 is susceptible to adduct formation by reactive aldehyde, 4HNE, which readily renders the enzyme inactive. -
Supplementary Materials
Supplementary Materials COMPARATIVE ANALYSIS OF THE TRANSCRIPTOME, PROTEOME AND miRNA PROFILE OF KUPFFER CELLS AND MONOCYTES Andrey Elchaninov1,3*, Anastasiya Lokhonina1,3, Maria Nikitina2, Polina Vishnyakova1,3, Andrey Makarov1, Irina Arutyunyan1, Anastasiya Poltavets1, Evgeniya Kananykhina2, Sergey Kovalchuk4, Evgeny Karpulevich5,6, Galina Bolshakova2, Gennady Sukhikh1, Timur Fatkhudinov2,3 1 Laboratory of Regenerative Medicine, National Medical Research Center for Obstetrics, Gynecology and Perinatology Named after Academician V.I. Kulakov of Ministry of Healthcare of Russian Federation, Moscow, Russia 2 Laboratory of Growth and Development, Scientific Research Institute of Human Morphology, Moscow, Russia 3 Histology Department, Medical Institute, Peoples' Friendship University of Russia, Moscow, Russia 4 Laboratory of Bioinformatic methods for Combinatorial Chemistry and Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia 5 Information Systems Department, Ivannikov Institute for System Programming of the Russian Academy of Sciences, Moscow, Russia 6 Genome Engineering Laboratory, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia Figure S1. Flow cytometry analysis of unsorted blood sample. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S2. Flow cytometry analysis of unsorted liver stromal cells. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S3. MiRNAs expression analysis in monocytes and Kupffer cells. Full-length of heatmaps are presented. -
Causal Role of Oxidative Stress in Unfolded Protein Response Development in the Hyperthyroid State
Free Radical Biology and Medicine 89 (2015) 401–408 Contents lists available at ScienceDirect Free Radical Biology and Medicine journal homepage: www.elsevier.com/locate/freeradbiomed Original Contribution Causal role of oxidative stress in unfolded protein response development in the hyperthyroid state Luis A. Videla a,n, Virginia Fernández a, Pamela Cornejo b, Romina Vargas a, Juan Carrasco a, Javier Fernández a, Nelson Varela a,c a Molecular and Clinical Pharmacology Program, Institute of Biomedical Sciences, Faculty of Medicine, University of Chile, Santiago-7, Chile b School of Medical Technology, Faculty of Health and Odontology, Diego Portales University, Santiago, Chile c Department of Medical Technology, Faculty of Medicine, University of Chile, Santiago-7, Chile article info abstract Article history: L-3,3′,5-Triiodothyronine (T3)-induced liver oxidative stress underlies significant protein oxidation, which Received 16 April 2015 may trigger the unfolded protein response (UPR). Administration of daily doses of 0.1 mg T3 for three Received in revised form consecutive days significantly increased the rectal temperature of rats and liver O2 consumption rate, 9 September 2015 with higher protein carbonyl and 8-isoprostane levels, glutathione depletion, and absence of morpho- Accepted 11 September 2015 logical changes in liver parenchyma. Concomitantly, liver protein kinase RNA-like endoplasmic reticulum Available online 3 October 2015 (ER) kinase and eukaryotic translation initiator factor 2α were phosphorylated in T3-treated rats com- Keywords: pared to controls, with increased protein levels of binding immunoglobulin protein and activating Thyroid hormone calorigenesis transcription factor 4. In addition, higher mRNA levels of C/EBP homologous protein, growth arrest and Liver oxidative stress DNA damage 34, protein disulfide isomerase, and ER oxidoreductin 1α were observed, changes that were Protein oxidation suppressed by N-acetylcysteine (0.5 g/kg) given before each dose of T . -
Food Microbiology Influence of Nitrogen Status in Wine Alcoholic Fermentation
Food Microbiology 83 (2019) 71–85 Contents lists available at ScienceDirect Food Microbiology journal homepage: www.elsevier.com/locate/fm Influence of nitrogen status in wine alcoholic fermentation T ∗ Antoine Goberta, , Raphaëlle Tourdot-Maréchala, Céline Sparrowb, Christophe Morgeb, Hervé Alexandrea a UMR Procédés Alimentaires et Microbiologiques, Université de Bourgogne Franche-Comté/ AgroSup Dijon - Equipe VAlMiS (Vin, Aliment, Microbiologie, Stress), Institut Universitaire de la Vigne et du Vin Jules Guyot, Université de Bourgogne, Dijon, France b SAS Sofralab, 79, Av. A.A. Thévenet, BP 1031, Magenta, France ARTICLE INFO ABSTRACT Keywords: Nitrogen is an essential nutrient for yeast during alcoholic fermentation. Nitrogen is involved in the biosynthesis Nitrogen of protein, amino acids, nucleotides, and other metabolites, including volatile compounds. However, recent Amino acids studies have called several mechanisms that regulate its role in biosynthesis into question. An initial focus on S. Ammonium cerevisiae has highlighted that the concept of “preferred” versus “non-preferred” nitrogen sources is extremely Alcoholic fermentation variable and strain-dependent. Then, the direct involvement of amino acids consumed in the formation of Yeasts proteins and volatile compounds has recently been reevaluated. Indeed, studies have highlighted the key role of Wine Volatile compounds lipids in nitrogen regulation in S. cerevisiae and their involvement in the mechanism of cell death. New wine- making strategies using non-Saccharomyces yeast strains in co- or sequential fermentation improve nitrogen management. Indeed, recent studies show that non-Saccharomyces yeasts have significant and specific needs for nitrogen. Moreover, sluggish fermentation can occur when they are associated with S. cerevisiae, necessitating nitrogen addition. In this context, we will present the consequences of nitrogen addition, discussing the sources, time of addition, transcriptome changes, and effect on volatile compound composition. -
Lifestyle Adaptations of Rhizobium from Rhizosphere to Symbiosis
Lifestyle adaptations of Rhizobium from rhizosphere to symbiosis Rachel M. Wheatleya,1, Brandon L. Forda,1,LiLib,1, Samuel T. N. Aroneya, Hayley E. Knightsa, Raphael Ledermanna, Alison K. Easta, Vinoy K. Ramachandrana,2, and Philip S. Poolea,2 aDepartment of Plant Sciences, University of Oxford, OX1 3RB Oxford, United Kingdom; and bChinese Academy of Sciences Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, 430074 Wuhan, People’s Republic of China Edited by Éva Kondorosi, Hungarian Academy of Sciences, Biological Research Centre, Szeged, Hungary, and approved August 4, 2020 (received for review May 7, 2020) By analyzing successive lifestyle stages of a model Rhizobium– nodule cells and undergo terminal differentiation into N2-fixing legume symbiosis using mariner-based transposon insertion se- bacteroids (10). Nodules provide a protective microaerobic envi- quencing (INSeq), we have defined the genes required for rhizo- ronment to maintain oxygen-labile nitrogenase (6). In exchange + sphere growth, root colonization, bacterial infection, N2-fixing for NH4 and alanine, the legume host provides carbon sources to bacteroids, and release from legume (pea) nodules. While only 27 fuel this process, primarily as dicarboxylic acids (13, 14). genes are annotated as nif and fix in Rhizobium leguminosarum,we However, nodule infection is only one stage of the lifestyle of show 603 genetic regions (593 genes, 5 transfer RNAs, and 5 RNA rhizobia, and they spend much of their time surviving in the rhi- features) are required for the competitive ability to nodulate pea and zosphere, the zone of soil immediately surrounding roots (15). -
Site-Directed Mutagenesis Studies of E. Coli Biotin Carboxylase Valerie Melissa Sloane Louisiana State University and Agricultural and Mechanical College
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2004 Site-directed mutagenesis studies of E. coli biotin carboxylase Valerie Melissa Sloane Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Sloane, Valerie Melissa, "Site-directed mutagenesis studies of E. coli biotin carboxylase" (2004). LSU Doctoral Dissertations. 1561. https://digitalcommons.lsu.edu/gradschool_dissertations/1561 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. SITE-DIRECTED MUTAGENESIS STUDIES OF E. COLI BIOTIN CARBOXYLASE A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Valerie M. Sloane B.S., University of Louisiana at Lafayette, 1995 May 2004 ACKNOWLEDGEMENTS I would like to thank Dr. Grover Waldrop, my major professor, for his invaluable guidance and helpful insights throughout this project, as well as for obtaining grants for the research. I am also indebted to Professor Simon Chang, Associate Professor Patrick DiMario, Associate Professor Jacqueline Stephens, Assistant Professor Anne Grove, and Assistant Professor Britt Thomas for serving on my committee and for a thoughtful reading of each chapter. Dr. Carol Blanchard and Tee Bordelon especially deserve my thanks for their careful tutelage in molecular biology and protein purification techniques.