Comparative Phylogeography of Oceanic Archipelagos: Hotspots For
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Polyploidy and the Evolutionary History of Cotton
POLYPLOIDY AND THE EVOLUTIONARY HISTORY OF COTTON Jonathan F. Wendel1 and Richard C. Cronn2 1Department of Botany, Iowa State University, Ames, Iowa 50011, USA 2Pacific Northwest Research Station, USDA Forest Service, 3200 SW Jefferson Way, Corvallis, Oregon 97331, USA I. Introduction II. Taxonomic, Cytogenetic, and Phylogenetic Framework A. Origin and Diversification of the Gossypieae, the Cotton Tribe B. Emergence and Diversification of the Genus Gossypium C. Chromosomal Evolution and the Origin of the Polyploids D. Phylogenetic Relationships and the Temporal Scale of Divergence III. Speciation Mechanisms A. A Fondness for Trans-oceanic Voyages B. A Propensity for Interspecific Gene Exchange IV. Origin of the Allopolyploids A. Time of Formation B. Parentage of the Allopolyploids V. Polyploid Evolution A. Repeated Cycles of Genome Duplication B. Chromosomal Stabilization C. Increased Recombination in Polyploid Gossypium D. A Diverse Array of Genic and Genomic Interactions E. Differential Evolution of Cohabiting Genomes VI. Ecological Consequences of Polyploidization VII. Polyploidy and Fiber VIII. Concluding Remarks References The cotton genus (Gossypium ) includes approximately 50 species distributed in arid to semi-arid regions of the tropic and subtropics. Included are four species that have independently been domesticated for their fiber, two each in Africa–Asia and the Americas. Gossypium species exhibit extraordinary morphological variation, ranging from herbaceous perennials to small trees with a diverse array of reproductive and vegetative -
Founder Effects Drive the Genetic Structure of Passively Dispersed Aquatic Organisms
A peer-reviewed version of this preprint was published in PeerJ on 11 December 2018. View the peer-reviewed version (peerj.com/articles/6094), which is the preferred citable publication unless you specifically need to cite this preprint. Montero-Pau J, Gómez A, Serra M. 2018. Founder effects drive the genetic structure of passively dispersed aquatic invertebrates. PeerJ 6:e6094 https://doi.org/10.7717/peerj.6094 1 Founder effects drive the genetic structure of passively 2 dispersed aquatic invertebrates 3 4 Javier Montero-Pau1,2, 3,#, Africa Gómez2 and Manuel Serra1 5 1 Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, A.O.22085, 6 46071, Valencia, Spain 7 2 Department of Biological Sciences, University of Hull, Hull, HU6 7RX, UK 8 3 Institute for the Conservation and Breeding of Agricultural Biodiversity (COMAV-UPV), 9 Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain 10 11 12 #Corresponding author: 13 Javier Montero-Pau, Institute for the Conservation and Breeding of Agricultural Biodiversity 14 (COMAV-UPV), Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia (Spain) 15 Phone: (+34) 963878847 16 [email protected] 17 18 Running title (45 characters): 19 Founder effects and local adaptation 20 1 PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3254v2 | CC BY 4.0 Open Access | rec: 13 Jul 2018, publ: 13 Jul 2018 21 Abstract 22 Populations of passively dispersed organisms in continental aquatic habitats typically show high 23 levels of neutral genetic differentiation despite their high dispersal capabilities. Several 24 evolutionary factors, including founder events, local adaptation, and life cycle features such as 25 high population growth rates and the presence of propagule banks, have been proposed to be 26 responsible for this paradox. -
Towards a Panbiogeography of the Seas
Biological Journal of the Linnean Society, 2005, 84, 675-723. Towards a panbiogeography of the seas MICHAEL HEADS* Biology Department, University of the South Pacific, PO Box 1168, Suva, Fiji Islands Received 6 October 2003; accepted for publication 28 June 2004 A contrast is drawn between the concept of spéciation favoured in the Darwin-Wallace biogeographic paradigm (founder dispersal from a centre of origin) and in panbiogeography (vicariance or allopatry). Ordinary ecological dis persal is distinguished from founder dispersal. A survey of recent literature indicates that ideas on many aspects of marine biology are converging on a panbiogeographic view. Panbiogeographic conclusions supported in recent work include the following observations: fossils give minimum ages for groups and most taxa are considerably older than their earliest known fossil; Pacific/Atlantic divergence calibrations based on the rise of the Isthmus of Panama at 3 Ma are flawed; for these two reasons most molecular clock calibrations for marine groups are also flawed; the means of dispersal of taxa do not correlate with their actual distributions; populations of marine species may be closed systems because of self-recruitment; most marine taxa show at least some degree of vicariant differentiation and vicariance is surprisingly common among what were previously assumed to be uniform, widespread taxa; man grove and seagrass biogeography and migration patterns in marine taxa are best explained by vicariance; the Indian Ocean and the Pacific Ocean represent major -
The Biogeography of Large Islands, Or How Does the Size of the Ecological Theater Affect the Evolutionary Play
The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly To cite this version: Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly. The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play. Revue d’Ecologie, Terre et Vie, Société nationale de protection de la nature, 2007, 62, pp.105-168. hal-00283373 HAL Id: hal-00283373 https://hal.archives-ouvertes.fr/hal-00283373 Submitted on 14 Dec 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THE BIOGEOGRAPHY OF LARGE ISLANDS, OR HOW DOES THE SIZE OF THE ECOLOGICAL THEATER AFFECT THE EVOLUTIONARY PLAY? Egbert Giles LEIGH, Jr.1, Annette HLADIK2, Claude Marcel HLADIK2 & Alison JOLLY3 RÉSUMÉ. — La biogéographie des grandes îles, ou comment la taille de la scène écologique infl uence- t-elle le jeu de l’évolution ? — Nous présentons une approche comparative des particularités de l’évolution dans des milieux insulaires de différentes surfaces, allant de la taille de l’île de La Réunion à celle de l’Amé- rique du Sud au Pliocène. -
Did Lemurs Have Sweepstake Tickets? an Exploration of Simpson's Model for the Colonization of Madagascar by Mammals
Journal of Biogeography (J. Biogeogr.) (2006) 33, 221–235 ORIGINAL Did lemurs have sweepstake tickets? An ARTICLE exploration of Simpson’s model for the colonization of Madagascar by mammals J. Stankiewicz1, C. Thiart1,2, J. C. Masters3,4* and M. J. de Wit1 Departments of 1Geological Sciences and ABSTRACT 2Statistical Sciences, African Earth Observatory Aim To investigate the validity of Simpson’s model of sweepstakes dispersal, Network (AEON) and University of Cape Town, Rondebosch, 3Natal Museum, particularly as it applies to the colonization of Madagascar by African mammals. Pietermaritzburg and 4School of Biological & We chose lemurs as a classic case. Conservation Sciences, University of KwaZulu- Location The East African coast, the Mozambique Channel and Madagascar. Natal, Scottsville, South Africa Methods First, we investigated the assumptions underlying Simpson’s statistical model as it relates to dispersal events. Second, we modelled the fate of a natural raft carrying one or several migrating mammals under a range of environmental conditions: in the absence of winds or currents, in the presence of winds and currents, and with and without a sail. Finally, we investigated the possibility of an animal being transported across the Mozambique Channel by an extreme climatic event like a tornado or a cyclone. Results Our investigations show that Simpson’s assumptions are consistently violated when applied to scenarios of over-water dispersal by mammals. We suggest that a simple binomial probability model is an inappropriate basis for extrapolating the likelihood of dispersal events. One possible alternative is to use a geometric probability model. Our estimates of current and wind trajectories show that the most likely fate for a raft emerging from an estuary on the east coast of Africa is to follow the Mozambique current and become beached back on the African coast. -
Rapid Radiation of Southern Ocean Shags in Response to Receding Sea Ice 2 3 Running Title: Blue-Eyed Shag Phylogeography 4 5 Nicolas J
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.18.456742; this version posted August 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Rapid radiation of Southern Ocean shags in response to receding sea ice 2 3 Running title: Blue-eyed shag phylogeography 4 5 Nicolas J. Rawlence1, *, Alexander T. Salis1, 2, Hamish G. Spencer1, Jonathan M. Waters1, 6 Lachie Scarsbrook1, Richard A. Phillips3, Luciano Calderón4, Timothée R. Cook5, Charles- 7 André Bost6, Ludovic Dutoit1, Tania M. King1, Juan F. Masello7, Lisa J. Nupen8, Petra 8 Quillfeldt7, Norman Ratcliffe3, Peter G. Ryan5, Charlotte E. Till1, 9, Martyn Kennedy1,* 9 1 Department of Zoology, University of Otago, Dunedin, New Zealand. 10 2 Australian Centre for Ancient DNA, University of Adelaide, South Australia, Australia. 11 3 British Antarctic Survey, Natural Environment Research Council, United Kingdom. 12 4 Instituto de Biología Agrícola de Mendoza (IBAM, CONICET-UNCuyo), Argentina. 13 5 FitzPatrick Institute of African Ornithology, Department of Biological Sciences, University 14 of Cape Town, South Africa. 15 6 CEBC-CNRS, UMR 7372, 405 Route de Prissé la Charrière, 79360 Villiers en Bois, 16 France. 17 7 Justus Liebig University, Giessen, Germany. 18 8 Organisation for Tropical Studies, Skukuza, South Africa. 19 9 School of Human Evolution and Social Change, Arizona State University, Arizona, USA. 20 21 Prepared for submission as a research article to Journal of Biogeography 22 23 * Corresponding authors: [email protected]; [email protected] 24 25 ACKNOWLEDGEMENTS 26 This work was supported with funding from the University of Otago. -
Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front
Fifty million years of beetle evolution along the Antarctic Polar Front Helena P. Bairda,1, Seunggwan Shinb,c,d, Rolf G. Oberprielere, Maurice Hulléf, Philippe Vernong, Katherine L. Moona, Richard H. Adamsh, Duane D. McKennab,c,2, and Steven L. Chowni,2 aSchool of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; bDepartment of Biological Sciences, University of Memphis, Memphis, TN 38152; cCenter for Biodiversity Research, University of Memphis, Memphis, TN 38152; dSchool of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea; eAustralian National Insect Collection, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT 2601, Australia; fInstitut de Génétique, Environnement et Protection des Plantes, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement, Université de Rennes, 35653 Le Rheu, France; gUniversité de Rennes, CNRS, UMR 6553 ECOBIO, Station Biologique, 35380 Paimpont, France; hDepartment of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL 33431; and iSecuring Antarctica’s Environmental Future, School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia Edited by Nils Chr. Stenseth, University of Oslo, Oslo, Norway, and approved May 6, 2021 (received for review August 24, 2020) Global cooling and glacial–interglacial cycles since Antarctica’s iso- The hypothesis that diversification has proceeded similarly in lation have been responsible for the diversification of the region’s Antarctic marine and terrestrial groups has not been tested. While marine fauna. By contrast, these same Earth system processes are the extinction of a diverse continental Antarctic biota is well thought to have played little role terrestrially, other than driving established (13), mounting evidence of significant and biogeo- widespread extinctions. -
9:00 Am PLACE
CARTY S. CHANG INTERIM CHAIRPERSON DAVID Y. IGE BOARD OF LAND AND NATURAL RESOURCES GOVERNOR OF HAWAII COMMISSION ON WATER RESOURCE MANAGEMENT KEKOA KALUHIWA FIRST DEPUTY W. ROY HARDY ACTING DEPUTY DIRECTOR – WATER AQUATIC RESOURCES BOATING AND OCEAN RECREATION BUREAU OF CONVEYANCES COMMISSION ON WATER RESOURCE MANAGEMENT STATE OF HAWAII CONSERVATION AND COASTAL LANDS CONSERVATION AND RESOURCES ENFORCEMENT DEPARTMENT OF LAND AND NATURAL RESOURCES ENGINEERING FORESTRY AND WILDLIFE HISTORIC PRESERVATION POST OFFICE BOX 621 KAHOOLAWE ISLAND RESERVE COMMISSION LAND HONOLULU, HAWAII 96809 STATE PARKS NATURAL AREA RESERVES SYSTEM COMMISSION MEETING DATE: April 27, 2015 TIME: 9:00 a.m. PLACE: Department of Land and Natural Resources Boardroom, Kalanimoku Building, 1151 Punchbowl Street, Room 132, Honolulu. AGENDA ITEM 1. Call to order, introductions, move-ups. ITEM 2. Approval of the Minutes of the June 9, 2014 N atural Area Reserves System Commission Meeting. ITEM 3. Natural Area Partnership Program (NAPP). ITEM 3.a. Recommendation to the Board of Land and Natural Resources approval for authorization of funding for The Nature Conservancy of Hawaii for $663,600 during FY 16-21 for continued enrollment in the natural area partnership program and acceptance and approval of the Kapunakea Preserve Long Range Management Plan, TMK 4-4-7:01, 4-4-7:03, Lahaina, Maui. ITEM 3.b. Recommendation to the Board of Land and Natural Resources approval for authorization of funding for The Nature Conservancy of Hawaii for $470,802 during FY 16-21 for continued enrollment in the natural area partnership program and acceptance and approval of the Pelekunu Long Range Management Plan, TMK 5-4- 3:32, 5-9-6:11, Molokai. -
Limits to Gene Flow in a Cosmopolitan Marine Planktonic Diatom
Limits to gene flow in a cosmopolitan marine planktonic diatom Griet Casteleyna,1, Frederik Leliaertb,1, Thierry Backeljauc,d, Ann-Eline Debeera, Yuichi Kotakie, Lesley Rhodesf, Nina Lundholmg, Koen Sabbea, and Wim Vyvermana,2 aLaboratory of Protistology and Aquatic Ecology and bPhycology Research Group, Biology Department, Ghent University, B-9000 Ghent, Belgium; cRoyal Belgian Institute of Natural Sciences, B-1000 Brussels, Belgium; dEvolutionary Ecology Group, Department of Biology, University of Antwerp, B-2020 Antwerp, Belgium; eSchool of Marine Biosciences, Kitasato University, Sanriku, Iwate 022-0101, Japan; fCawthron Institute 7042, Nelson, New Zealand; and gThe Natural History Museum of Denmark, DK-1307 Copenhagen, Denmark Edited by Paul G. Falkowski, Rutgers, The State University of New Jersey, New Brunswick, Brunswick, NJ, and approved June 10, 2010 (received for review February 3, 2010) The role of geographic isolation in marine microbial speciation is diversity within and gene flow between populations (20). To date, hotly debated because of the high dispersal potential and large population genetic studies of high-dispersal organisms in the ma- population sizes of planktonic microorganisms and the apparent rine environment have largely focused on pelagic or benthic ani- lack of strong dispersal barriers in the open sea. Here, we show that mals with planktonic larval stages (21–24). Population genetic gene flow between distant populations of the globally distributed, structuring of planktonic microorganisms has been much less ex- bloom-forming diatom species Pseudo-nitzschia pungens (clade I) is plored due to difficulties with species delineation and lack of fine- limited and follows a strong isolation by distance pattern. Further- scale genetic markers for these organisms (25–28). -
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Checklist of the terrestrial and freshwater arthropods of French Polynesia (Chelicerata; Myriapoda; Crustacea; Hexapoda) Thibault RAMAGE 9 quartier de la Glacière, F-29900 Concarneau (France) and Service du Patrimoine naturel, Muséum national d’Histoire naturelle, case postale 41, 57 rue Cuvier, F-75231 Paris cedex 05 (France) [email protected] Published on 30 June 2017 urn:lsid:zoobank.org:pub:51C2E5A2-0132-48B6-A747-94F37C349B36 Ramage T. 2017. — Checklist of the terrestrial and freshwater arthropods of French Polynesia (Chelicerata; Myriapoda; Crustacea; Hexapoda). Zoosystema 39 (2): 213-225. https://doi.org/10.5252/z2017n2a3 ABSTRACT An annotated checklist for the terrestrial and freshwater arthropods of French Polynesia is presented. Compiled with the help of 48 experts and based on published records, it comprises 3025 valid species names belonging to the classes of Hexapoda Blainville, 1816 (2556 species), Chelicerata Heymons, 1901 (36 7 species), Myriapoda Latreille, 1802 (22 species) and Crustacea Pennant, 1777 (80 species). Reported are 1841 taxa from the Society Islands, followed by the Marquesas Islands with 1198 taxa, KEY WORDS the Austral Islands with 609 taxa, the Tuamotu Islands with 231 taxa and the Gambier Islands with Species database, 186 taxa. The specificity of this fauna and the analysis of each class and order are discussed. The level endemism, of endemism is particularly high, 61% of the known species, with non-native species representing biogeography, speciation, 13% of the overall species count. The threats to the native fauna and flora of French Polynesia and threats to endemic species. particularly to endemic insect species are detailed. RÉSUMÉ Liste de référence des arthropodes terrestres et d’eau douce de Polynésie française (Chelicerata; Myriapoda; Crustacea; Hexapoda). -
A Roadmap for Island Biology: 50 Fundamental Questions After 50&
Journal of Biogeography (J. Biogeogr.) (2017) 44, 963–983 SPECIAL A roadmap for island biology: PAPER 50 fundamental questions after 50 years of The Theory of Island Biogeography Jairo Patino~ 1,2* , Robert J. Whittaker3,4 , Paulo A.V. Borges2 , Jose Marıa Fernandez-Palacios5, Claudine Ah-Peng6, Miguel B. Araujo 4,7,8, Sergio P. Avila 9, Pedro Cardoso2,10, Josselin Cornuault11, Erik J. de Boer12, Lea de Nascimento5, Artur Gil2, Aaron Gonzalez-Castro1, Daniel S. Gruner13, Ruben Heleno14, Joaquın Hortal8,15, Juan Carlos Illera16, Christopher N. Kaiser-Bunbury17, Thomas J. Matthews2,18, Anna Papadopoulou19 , Nathalie Pettorelli20, Jonathan P. Price21, Ana M. C. Santos2,8,22, Manuel J. Steinbauer23 , Kostas A. Triantis2,24, Luis Valente25, Pablo Vargas26, Patrick Weigelt27 and Brent C. Emerson1,28 1Island Ecology and Evolution Research Group, ABSTRACT Instituto de Productos Naturales y Aims The 50th anniversary of the publication of the seminal book, The Theory Agrobiologıa, (IPNA-CSIC), La Laguna, 2 of Island Biogeography, by Robert H. MacArthur and Edward O. Wilson, is a Tenerife, Canary Islands, Spain, Centre for Ecology, Evolution and Environmental timely moment to review and identify key research foci that could advance Changes (cE3c)/Azorean Biodiversity Group, island biology. Here, we take a collaborative horizon-scanning approach to University of the Azores, Angra do Heroısmo identify 50 fundamental questions for the continued development of the field. 3 and Ponta Delgada, Azores, Portugal, School Location Worldwide. of Geography and the Environment, University of Oxford, South Parks Road, Oxford, UK, Methods We adapted a well-established methodology of horizon scanning to 4Center for Macroecology, Evolution and identify priority research questions in island biology, and initiated it during the Climate, University of Copenhagen, Island Biology 2016 conference held in the Azores. -
Phylogeny and Biogeography of the Spiny Ant Genus Polyrhachis Smith (Hymenoptera: Formicidae)
Systematic Entomology (2016), 41, 369–378 DOI: 10.1111/syen.12163 Out of South-East Asia: phylogeny and biogeography of the spiny ant genus Polyrhachis Smith (Hymenoptera: Formicidae) DIRK MEZGERandCORRIE S. MOREAU Department of Science and Education, Field Museum of Natural History, Chicago, IL, U.S.A. Abstract. Spiny ants (Polyrhachis Smith) are a hyper-diverse genus of ants distributed throughout the Palaeotropics and the temperate zones of Australia. To investigate the evolution and biogeographic history of the group, we reconstructed their phylogeny and biogeography using molecular data from 209 taxa and seven genes. Our molecular data support the monophyly of Polyrhachis at the generic level and several of the 13 recognized subgenera, but not all are recovered as monophyletic. We found that Cam- pomyrma Wheeler consists of two distinct clades that follow biogeographic affinities, that the boundaries of Hagiomyrma Wheeler are unclear depending on the analysis, that Myrma Billberg might be treated as one or two clades, and that Myrmhopla Forel is not monophyletic, as previously proposed. Our biogeographic ancestral range analyses suggest that the evolution of Polyrhachis originated in South-East Asia, with an age of the modern crown-group Polyrhachis of 58 Ma. Spiny ants dispersed out of South-East Asia to Australia several times, but only once to mainland Africa around 26 Ma. Introduction eight genera, most notably the genera Camponotus Mayr (carpenter ants) and Polyrhachis Smith (spiny ants) (Fig. 1) Ants are among the most ecologically important and abundant (Bolton, 2003, 2013). These genera are very common and arthropods (Lach et al., 2010). These social insects are espe- widespread, as well as very conspicuous ants due to their cially common in tropical forest ecosystems, where they act as above-ground foraging activities.