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Deep Microbial Community Profiling Along the Fermentation Process of Pulque, a Major Biocultural Resource of Mexico
bioRxiv preprint doi: https://doi.org/10.1101/718999; this version posted July 31, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deep microbial community profiling along the fermentation process of pulque, a major biocultural resource of Mexico. 1 1 2 Carolina Rocha-Arriaga , Annie Espinal-Centeno , Shamayim Martinez-Sanchez , Juan 1 2 1,3 Caballero-Pérez , Luis D. Alcaraz * & Alfredo Cruz-Ramirez *. 1 Molecular & Developmental Complexity Group, Unit of Advanced Genomics, LANGEBIO-CINVESTAV, Irapuato, México. 2 Laboratorio de Genómica Ambiental, Departamento de Biología Celular, Facultad de Ciencias, Universidad Nacional Autónoma de México. Cd. Universitaria, 04510 Coyoacán, Mexico City, Mexico. 3 Escuela de Agronomía, Universidad de La Salle Bajío, León, Gto, Mexico. *Corresponding authors: [email protected], [email protected] ● Our approach allowed the identification of a broader microbial diversity in Pulque ● We increased 4.4 times bacteria genera and 40 times fungal species detected in mead. ● Newly reported bacteria genera and fungal species associated to Pulque fermentation Abstract Some of the biggest non-three plants endemic to Mexico were called metl in the Nahua culture. During colonial times they were renamed with the antillan word maguey. This was changed again by Carl von Linné who called them Agave (a greco-latin voice for admirable). For several Mexican prehispanic cultures, Agave species were not only considered as crops, but also part of their biocultural resources and cosmovision. Among the major products obtained from some Agave spp since pre-hispanic times is the alcoholic beverage called pulque or octli. -
Probiotic Lactic Yeast® New Generation Probiotic Kluyveromyces B0399
PROBIOTIC LACTIC YEAST® NEW GENERATION PROBIOTIC KLUYVEROMYCES B0399 PROBIOTIC LACTIC YEAST® NEW GENERATION PROBIOTIC KLUYVEROMYCES B0399®(Turval B0399®) Kluyveromyces marxianus fragilis B0399 “K. marxianus B0399® demonstrated a number of beneficial and strain specific properties desirable for application as a probiotic”, research done by University of Bologna, Italy and University of Reading, UK and published by the American Society for Microbiology in the scientific journal Applied Environmental Microbiology, 2012 Feb; 78 (4) APPROVALS AND RECOGNITIONS BY NATIONAL AND INTERNATIONAL AUTHORITIES: Turval is an official supplier of the Italian MInistry of Health Italian Army (Esercito Italiano) for animal use: Canadian Food Inspection Agency Scientific and Technologic Park (ZIU); University of Udine via J.Linussio, 51; 33100 Udine, Italy tel.+39 (0432)629731 fax.+39 (0432)603887 E-mail: [email protected] Web site: www.turval.com PROBIOTIC LACTIC YEAST® NEW GENERATION PROBIOTIC KLUYVEROMYCES B0399 HUMAN NUTRITION NUTRIRE IL PIANETA ENERGIA PER LA VITA FEEDING THE PLANET ENERGY FOR LIFE EUFYR [COOP, ITALY], THE FIRST COMMERCIALISED PROBIOTIC YOGURT CONTAINING KLUYVEROMYCES B0399®, WAS CHOSEN FOR THE UNIVERSAL EXHIBITION EXPO 2015 AS AN EXAMPLE OF LEADING INNOVATION IN FUNCTIONAL DAIRY PRODUCTS. NEW GENERATION PROBIOTYC YOGURT WITH PROBIOTIC LACTIC YEAST® COOP ITALY Web site: www.turval.com PROBIOTIC LACTIC YEAST® NEW GENERATION PROBIOTIC KLUYVEROMYCES B0399 PROBIOTIC LACTIC YEAST® BROUGHT MULTIPLE AWARDS TO YOGURTS PRODUCERS FOR THE MOST INNOVATIVE PRODUCT EUROPEAN AWARD IN 2014 "EUFYR POMEGRANATE", PRODUCED BY ONE OF THE BIGGEST ITALIAN RETAILERS, COOP – ITALY, WINS PRESTIGIOUS PLMA'S INTERNATIONAL "SALUTE TO EXCELLENCE" AWARD IN AMSTERDAM; EUFYR IS THE WINNER AMONG 16 EUROPEAN COUNTRIES FOR THE BEST INNOVATION IN PRIVATE LABEL Recognizing Innovation in Private Label Welcome to PLMA’s International Salute to Excellence Awards, honouring retailers for their commitment to their own brands and giving recognition to their innovative private label products. -
Synthesis of Polyketides from Low Cost Substrates by the Thermotolerant Yeast Kluyveromyces Marxianus
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
Rational Engineering of Kluyveromyces Marxianus to Create a Chassis for the Production of Aromatic Products Arun S
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.12.247957; this version posted August 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Rational engineering of Kluyveromyces marxianus to create a chassis for the production of aromatic products Arun S. Rajkumar and John P. Morrissey* School of Microbiology / Centre for Synthetic Biology and Biotechnology / Environmental Research Institute / APC Microbiome Institute, University College Cork, Cork T12 K8AF, Ireland *To whom correspondence may be addressed: [email protected] Abstract The yeast Kluyveromyces marxianus offers unique potential for industrial biotechnology because of useful features like rapid growth, thermotolerance and a wide substrate range. As an emerging alternative platform, K. marxianus requires the development and validation of metabolic engineering strategies to best utilize its metabolism as a basis for bio-based production. To illustrate the synthetic biology strategies to be followed and showcase its potential, we describe a comprehensive approach to rationally engineer a metabolic pathway in K. marxianus. We use the phenylalanine biosynthetic pathway both as a prototype and because phenylalanine is a precursor for commercially valuable secondary metabolites. First, we modify and overexpress the pathway to be resistant to feedback inhibition so as to overproduce phenylalanine de novo from synthetic minimal medium. Second, we assess native and heterologous means to increase precursor supply to the biosynthetic pathway. Finally, we eliminate branch points and competing reactions in the pathway and rebalance precursors to redirect metabolic flux to a specific product, 2-phenylethanol (2-PE). -
Brewer's Yeast: Genetics and Biotechnology
Applied Mycology and Biotechnology Volume 2. Agriculture and Food Production 1 @ 2002 Elsevier Science B.V. Al! rights reserved Brewer's Yeast: Genetics and Biotechnology Julio Polaina Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, E46100-Burjasot (Valencia), Spain (E-Mail:jpola,[email protected]). The advance of Science in fue 19thcentury was a decisive force for fue deve10pmentand expansion of fue modero brewing industry. Correspondingly, fue brewing industry contributed important scientific achievements, such as Hansen's isolation of pure yeast cultures. Early studies on yeast were connected to fue development of different scientific disciplines such as Microbiology, Biochemistry and Genetics. An example of this connection is Winge's discovery of Mendelian inheritance in yeast. However, genetic studies with fue specific type of yeast used in brewing were hampered by fue complex constitution of this organismo The emergence of Molecular Biology allowed a precise characterization of fue brewer's yeast and fue manipulation of its properties, aimed at fue improvement of the brewing process and fue quality of fue beer. 1. INTRODUCTION The progress of chemistry, physiology and microbiology during the 19th.Century,allowed a scientific approach to brewing that caused a tremendousadvancement on fue production of beer. The precursor of such approach was the French microbiologist Louis Pasteur. At this time, fue Danish brewer Jacob Christian Jacobsen,algO founded fue Carlsberg Brewery and fue Carlsberg Laboratory. In Jacobsen'sown words, fue purpose ofthe Carlsberg Laboratory was: "By independent investigation to test the doctrines already furnished by Science and by continued studies to develop them into asfully scientij/c a basis as possible for the operation of mailing, brewing and fermentation". -
Intensive Multiple Sequential Batch Simultaneous Saccharification and Cultivation of K
processes Article Intensive Multiple Sequential Batch Simultaneous Saccharification and Cultivation of Kluyveromyces marxianus SS106 Thermotolerant Yeast Strain for Single-Step Ethanol Fermentation from Raw Cassava Starch Kwanruthai Malairuang 1 , Morakot Krajang 1, Rapeepong Rotsattarat 2 and Saethawat Chamsart 3,* 1 Biological Sciences Program, Faculty of Science, Burapha University, Chonburi 20131, Thailand; [email protected] (K.M.); [email protected] (M.K.) 2 Department of Biotechnology, Faculty of Science, Burapha University, Chonburi 20131, Thailand; [email protected] 3 Department of Biology, Faculty of Science, Burapha University, Chonburi 20131, Thailand * Correspondence: [email protected]; Tel.: +6696-887-3878 Received: 29 June 2020; Accepted: 20 July 2020; Published: 27 July 2020 Abstract: We developed the intensive multiple sequential batch simultaneous saccharification and cultivation of the selected thermotolerant yeast strain for single-step ethanol production. The selection and high-cell-density inoculum production of thermotolerant yeast able to produce ethanol under the optimal conditions for single-step ethanol fermentation has become a necessity. In this study, the newly isolated Kluyveromyces marxianus SS106 could tolerate high temperatures (35–45 ◦C) and grow under a wide range of pH values (3.0–5.5), which are the optimum conditions of raw cassava starch hydrolyzing enzyme used in single-step ethanol fermentation. The high-cell-density concentration of K. marxianus SS106 was produced by a single batch and an intensive multiple sequential batch process in a 5-L stirred tank bioreactor using the simultaneous saccharification and cultivation (SSC) method. The single SSC process yielded the yeast cell biomass at a concentration of 39.30 g/L with a productivity 1 of 3.28 g/L/h and a specific growth rate of 0.49 h− . -
Fungi P1: OTA/XYZ P2: ABC JWST082-FM JWST082-Kavanagh July 11, 2011 19:19 Printer Name: Yet to Come
P1: OTA/XYZ P2: ABC JWST082-FM JWST082-Kavanagh July 11, 2011 19:19 Printer Name: Yet to Come Fungi P1: OTA/XYZ P2: ABC JWST082-FM JWST082-Kavanagh July 11, 2011 19:19 Printer Name: Yet to Come Fungi Biology and Applications Second Edition Editor Kevin Kavanagh Department of Biology National University of Ireland Maynooth Maynooth County Kildare Ireland A John Wiley & Sons, Ltd., Publication P1: OTA/XYZ P2: ABC JWST082-FM JWST082-Kavanagh July 11, 2011 19:19 Printer Name: Yet to Come This edition first published 2011 © 2011 by John Wiley & Sons, Ltd. Wiley-Blackwell is an imprint of John Wiley & Sons, formed by the merger of Wiley’s global Scientific, Technical and Medical business with Blackwell Publishing. Registered Office: John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial Offices: 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030-5774, USA For details of our global editorial offices, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/ wiley-blackwell. The right of the author to be identified as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher. -
12. Kluyveromyces Marxianus Var. Marxianus
FEBS 24376 FEBS Letters 487 (2000) 71^75 Genomic Exploration of the Hemiascomycetous Yeasts: 12. Kluyveromyces marxianus var. marxianus Bertrand Llorentea;*, Alain Malpertuya, Gae«lle Blandina, Franc°ois Artiguenaveb, Patrick Winckerb, Bernard Dujona aUnite¨ de Ge¨ne¨tique Mole¨culaire des Levures, (URA 2171 du CNRS and UFR 927 Universite¨ Pierre et Marie Curie), Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France bGe¨noscope-Centre National de Se¨quenc°age, 2 rue Gaston Cre¨mieux P.O. Box 191, 91006 Evry Cedex, France Received 3 November 2000; accepted 9 November 2000 First published online 27 November 2000 Edited by Horst Feldmann genes encoding the inulinase [9], the L-glucosidase [10], the Abstract As part of the comparative genomics project `GEN- OLEVURES', we studied the Kluyveromyces marxianus var. pectin-degrading endopolygalacturonase Epg1p [11], the three marxianus strain CBS712 using a partial random sequencing glyceraldehyde-3-phosphate dehydrogenases Gap1p, Gap2p, strategy. With a 0.2Ugenome equivalent coverage, we identified Gap3p [12] and a pyruvate decarboxylase [9]. ca. 1300 novel genes encoding proteins, some containing The present analysis of 2491 Random Sequenced Tags spliceosomal introns with consensus splice sites identical to those (RSTs) totaling 2363 kb or 17% of the entire genome of K. of Saccharomyces cerevisiae, 28 tRNA genes, the whole rDNA marxianus allowed the identi¢cation of ca. 1300 novel nuclear repeat, and retrotransposons of the Ty1/2 family of S. cerevisiae genes encoding proteins, 28 novel nuclear tRNA genes and a with diverged Long Terminal Repeats. Functional classification novel class of retrotransposon belonging to the copia family. -
Beauty and the Yeast
Beauty and the Yeast Brewer’s yeast what, how and why should I care? Troels Prahl Vice President of Innovation and European Operations #2 Agenda • History of beer yeast • Yeast metabolism basics - Flavor creation • White Labs • Yeast handling -Pitching -Fermentation -Collection and reuse #3 In the beginning…… • Laboratories for commercial yeast did not exist • Brewing strains were created by brewers by: – Continuing to use strains that performed well and tasted good – Passing strains to brewer to brewer 4 The Beginning of Yeast Banking • Emil Christian Hansen 1883 – Developed pure culture techniques • Strain selection and strain storage Yeast Used in Brewing All yeast used in brewing worldwide is non-GMO Ale Yeast • Original brewing strain - Saccharomyces cerevisiae • Top ferment Lager Yeast • Warmer fermentation • Natural hybrid - temps *Saccharomyces • Wide strain variety pastorianus (Saccharomyces Other Strains carlsbergensis) • Saccharomyces uvarum • Bottom ferment • Saccharomyces bayanus • Colder fermentation temps • Saccharomyces • Limited strain variety eubayanus *Saccharomyces pastorianus = Saccharomyces cerevisiae + Saccharomyces eubayanus. 6 Predictability... 1. Reliable growth and fermentation 2. Short lag phase, normal yield 3. Suited for wort medium and conditions (pH, sugars, nutrients, temperature) 4. High attenuation 5. Low acid production 6. Desired flocculation 7. Desired aroma profile 8. Stable and robust culture 9. Safe for food production ...and Creativity! Yeast does not care about making beer, it only cares about -
Kinetic Analysis of Kluyveromyces Marxianus Yeast Strain
Louisiana State University LSU Digital Commons LSU Master's Theses Graduate School 2004 Kinetic analysis of Kluyveromyces marxianus yeast strain Erika Guimaraes Madeira Reeves Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_theses Part of the Engineering Commons Recommended Citation Reeves, Erika Guimaraes Madeira, "Kinetic analysis of Kluyveromyces marxianus yeast strain" (2004). LSU Master's Theses. 917. https://digitalcommons.lsu.edu/gradschool_theses/917 This Thesis is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Master's Theses by an authorized graduate school editor of LSU Digital Commons. For more information, please contact [email protected]. KINETIC ANALYSIS OF KLUYVEROMYCES MARXIANUS YEAST STRAIN A Thesis Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Master of Science in Biological and Agricultural Engineering in The Department of Biological and Agricultural Engineering by Erika Guimarães Madeira Reeves B.S., Louisiana State University, 2001 May 2004 Dedicated to my sister, the late Camila Guimarães Madeira and my husband Edward Patrick Reeves for loving and supporting me throughout my life. ii ACKNOWLEDGEMENTS First and foremost, I would like to thank God for giving me the strength and persistence to complete this research. I would also like to acknowledge the many people whose advice and support was invaluable throughout the pursuit of this thesis. I want to express great thanks and appreciation to my major advisors Dr. -
Novel Non-Cerevisiae Saccharomyces Yeast Species Used in Beer and Alcoholic Beverage Fermentations
fermentation Review Novel Non-Cerevisiae Saccharomyces Yeast Species Used in Beer and Alcoholic Beverage Fermentations James Bruner * and Glen Fox * Food Science and Technology, University of California, Davis, CA 95616, USA * Correspondence: [email protected] (J.B.); [email protected] (G.F.) Received: 28 October 2020; Accepted: 22 November 2020; Published: 24 November 2020 Abstract: A great deal of research in the alcoholic beverage industry was done on non-Saccharomyces yeast strains in recent years. The increase in research interest could be attributed to the changing of consumer tastes and the search for new beer sensory experiences, as well as the rise in popularity of mixed-fermentation beers. The search for unique flavors and aromas, such as the higher alcohols and esters, polyfunctional thiols, lactones and furanones, and terpenoids that produce fruity and floral notes led to the use of non-cerevisiae Saccharomyces species in the fermentation process. Additionally, a desire to invoke new technologies and techniques for making alcoholic beverages also led to the use of new and novel yeast species. Among them, one of the most widely used non-cerevisiae strains is S. pastorianus, which was used in the production of lager beer for centuries. The goal of this review is to focus on some of the more distinct species, such as those species of Saccharomyces sensu stricto yeasts: S. kudriavzevii, S. paradoxus, S. mikatae, S. uvarum, and S. bayanus. In addition, this review discusses other Saccharomyces spp. that were used in alcoholic fermentation. Most importantly, the factors professional brewers might consider when selecting a strain of yeast for fermentation, are reviewed herein. -
How to Manage Yeast for the Home Brewery
How to Manage Yeast for the Home Brewery Dr. Douglas Gladue University of Connecticut / Plum Island Animal Disease Center BJCP National Judge How I started with yeast - Graduate work: Stony Brook University -Thesis work in the Konopka Lab - was on cell signaling in Saccharomyces cerevisiae -Homebrewer since Jan 2002 Why study yeast? • Single cell organism • One of the simplest Eukaryotic organisms – Bacteria are prokaryotic – Humans and all animals Eukaryotic • Many cellular processes are conserved in yeast and humans • About 20% of gene linked diseases in humans have a corresponding gene in yeast • Many drugs were first tested in yeast. Advantages of working in a yeast lab • Always had a supply of yeast growth media • Autoclaves for sterility • “free consumables” • Ability to isolate and freeze down any yeast strain • Could have enough yeast to pitch overnight • Yeast strains were always “Free” UCONN/ Plum Island: Use Yeast to Study Viruses Yeast and the Homebrewer • Liquid yeasts not always available or fresh • Expensive some times 1/3 of the cost of ingredients • Spontaneous brew day • Typically requires dried yeast or homebrew store visit • Starters grow more slowly • Lab optimal growth conditions • Freezing/ Storing yeasts more difficult • Most homes don’t have – a -70oC freezer (typical home freezer is -20) – Sterile working environments Overview • History of yeast • How yeast grow/ferment • Yeast terminology/choosing a yeast strain • New advances in yeast technology • Simple ways to harvest yeast • Maintaining a house yeast/reusing yeast Discovery of yeast for fermentation • 7000 years ago: Oldest records of beer • Inoculation stick (vat to vat) • Anton van Leeuwenhoek 1680 – First to observe yeast • Theodore Schwann 1837 – Determined yeast was alive (Zuckerpilz) – Latin translation: Saccharomyces • Louis Pasteur 1866 • fermentation was from living cells Photos from wikipedia Yeast and Brewing • 1876 Carlsberg established first brewing laboratory • 1883 was the first brewery using pure yeast cultures Emil Christian Hansen.