Joint Program in Ial Oceanography
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Fauna Atingida Por Acidentes Ambientais Envolvendo Produtos Químicos
Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Departamento de Ciências do Solo Curso de Especialização em Gerenciamento Ambiental Sérgio Greif FAUNA ATINGIDA POR ACIDENTES AMBIENTAIS ENVOLVENDO PRODUTOS QUÍMICOS Orientadora: Biól. Iris Regina Fernandes Poffo (PhD.) São Paulo 2017 Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Departamento de Ciências do Solo Curso de Especialização em Gerenciamento Ambiental Sérgio Greif FAUNA ATINGIDA POR ACIDENTES AMBIENTAIS ENVOLVENDO PRODUTOS QUÍMICOS Orientadora: Biól. Iris Regina Fernandes Poffo (PhD.) Trabalho apresentado como pré-requisito para a obtenção de Certificado de Conclusão de Curso de Especialização em Gerenciamento Ambiental São Paulo 2017 iii “Nós nos tornamos, pelo poder de um glorioso acidente evolucionário chamado inteligência, mordomos da continuidade da vida na Terra. Não pedimos este papel, mas não podemos renegá-lo. Podemos não ser adequados para isso, mas aqui estamos." — Stephen Jay Gould iv SUMÁRIO SUMÁRIO......................................................................................................... iv . ......................................................................................... DEDICATÓRIA................................................................................................. vi ... ......................................................................................... AGRADECIMENTOS....................................................................................... vii . RELAÇÃO DE -
Petition to List Eight Species of Pomacentrid Reef Fish, Including the Orange Clownfish and Seven Damselfish, As Threatened Or Endangered Under the U.S
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST EIGHT SPECIES OF POMACENTRID REEF FISH, INCLUDING THE ORANGE CLOWNFISH AND SEVEN DAMSELFISH, AS THREATENED OR ENDANGERED UNDER THE U.S. ENDANGERED SPECIES ACT Orange Clownfish (Amphiprion percula) photo by flickr user Jan Messersmith CENTER FOR BIOLOGICAL DIVERSITY SUBMITTED SEPTEMBER 13, 2012 Notice of Petition Rebecca M. Blank Acting Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave, NW Washington, D.C. 20230 Email: [email protected] Samuel Rauch Acting Assistant Administrator for Fisheries NOAA Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 E-mail: [email protected] PETITIONER Center for Biological Diversity 351 California Street, Suite 600 San Francisco, CA 94104 Tel: (415) 436-9682 _____________________ Date: September 13, 2012 Shaye Wolf, Ph.D. Miyoko Sakashita Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. § 1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R.§ 424.14(a), the Center for Biological Diversity hereby petitions the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (“NOAA”), through the National Marine Fisheries Service (“NMFS” or “NOAA Fisheries”), to list eight pomacentrid reef fish and to designate critical habitat to ensure their survival. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of imperiled species and their habitats through science, policy, and environmental law. The Center has more than 350,000 members and online activists throughout the United States. -
Identification Guide to the Common Coatal Food Fishes of the Pacific Region-48-53
YDX Myripristis adusta Holocentridae / Soldierfish and Squirrelfish Shadowfin soldierfish Silvery-salmon pink with 1 dark 3 1 scale margins, particularly on upper body. 2 Reddish-black spot on rear margin of gill covers and 3 reddish-black margins on soft dorsal, anal and caudal fins. Max length: 30 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO TV VU WF WS YDX Myripristis amaena Holocentridae / Soldierfish and Squirrelfish Brick soldierfish Silvery-red with 1 dark scale 1 margins and 2 dark red band on margin of gill covers. 3 Dorsal, anal and caudal fins red without white margins. Max length: 27 cm FL AS CK FJ FM GU KI MH MP NC NR NU PF 2 3 PG PN PW SB TK TO TV VU WF WS Similar to Myripristis violacea but without white margins on soft dorsal, anal and caudal fins. YJW Myripristis berndti Holocentridae / Soldierfish and Squirrelfish Blotcheye soldierfish, bigscale soldierfish 4 White with red tints and 1 red 1 scale margins. 2 Dark margin on gill covers and 3 white margins on soft dorsal, pelvic, anal and caudal fins.4 Outer part of spiny dorsal fin orange-yellow. Max length: 28 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO 3 TV VU WF WS Similar to Myripristis kuntee but with much larger scales and a redder overall appearance. 48 Holocentridae / Soldierfish and Squirrelfish Myripristis kuntee YJZ Shoulderbar soldierfish 2 Silvery orange-red with 1 darker scale margins. -
INTERACTIONS AMONG CORAL REEF HABITAT and the BEHAVIOR and STRESS PHYSIOLOGY of BICOLOR DAMSELFISH (STEGASTES PARTITUS) Meagan N
INTERACTIONS AMONG CORAL REEF HABITAT AND THE BEHAVIOR AND STRESS PHYSIOLOGY OF BICOLOR DAMSELFISH (STEGASTES PARTITUS) Meagan N. Schrandt A Thesis Submitted to the University of North Carolina Wilmington in Partial Fulfillment of the Requirements for the Degree of Master of Science Department of Biology and Marine Biology University of North Carolina Wilmington 2010 Approved by Advisory Committee Christopher M. Finelli John R. Godwin Frederick S. Scharf Sean C. Lema Chair Accepted by Dean, Graduate School TABLE OF CONTENTS ACKNOWLEDGEMENTS .................................................................................................v DEDICATION .................................................................................................................. vii LIST OF TABLES .......................................................................................................... viii LIST OF FIGURE ............................................................................................................. ix CHAPTER 1: SPATIAL PATTERNS OF INTRASPECIFIC BEHAVIORAL VARIATION IN THE DEMERSAL FISH STEGASTES PARTITUS ASSOCIATE WITH PHYSICAL AND SOCIAL ENVIRONMENTAL VARIATION ON A CORAL REEF .....................................................................................................................1 SUMMARY .............................................................................................................2 INTRODUCTION ...................................................................................................4 -
US Fish & Wildlife Service Seabird Conservation Plan—Pacific Region
U.S. Fish & Wildlife Service Seabird Conservation Plan Conservation Seabird Pacific Region U.S. Fish & Wildlife Service Seabird Conservation Plan—Pacific Region 120 0’0"E 140 0’0"E 160 0’0"E 180 0’0" 160 0’0"W 140 0’0"W 120 0’0"W 100 0’0"W RUSSIA CANADA 0’0"N 0’0"N 50 50 WA CHINA US Fish and Wildlife Service Pacific Region OR ID AN NV JAP CA H A 0’0"N I W 0’0"N 30 S A 30 N L I ort I Main Hawaiian Islands Commonwealth of the hwe A stern A (see inset below) Northern Mariana Islands Haw N aiian Isla D N nds S P a c i f i c Wake Atoll S ND ANA O c e a n LA RI IS Johnston Atoll MA Guam L I 0’0"N 0’0"N N 10 10 Kingman Reef E Palmyra Atoll I S 160 0’0"W 158 0’0"W 156 0’0"W L Howland Island Equator A M a i n H a w a i i a n I s l a n d s Baker Island Jarvis N P H O E N I X D IN D Island Kauai S 0’0"N ONE 0’0"N I S L A N D S 22 SI 22 A PAPUA NEW Niihau Oahu GUINEA Molokai Maui 0’0"S Lanai 0’0"S 10 AMERICAN P a c i f i c 10 Kahoolawe SAMOA O c e a n Hawaii 0’0"N 0’0"N 20 FIJI 20 AUSTRALIA 0 200 Miles 0 2,000 ES - OTS/FR Miles September 2003 160 0’0"W 158 0’0"W 156 0’0"W (800) 244-WILD http://www.fws.gov Information U.S. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Stegastes Partitus (Bicolour Damselfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Stegastes partitus (Bicolour Damselfish) Family: Pomacentridae (Damselfish and Clownfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Bicolour damselfish, Stegastes partitus. [http://reefguide.org/carib/bicolordamsel.html, downloaded 14 March 2015] TRAITS. Stegastes partitus is one of the five most commonly found fishes amongst the coral reefs within Trinidad and Tobago. Length: total length in males and females is 10cm (Rainer, n.d.). Contains a total of 12 dorsal spines and 14-17 dorsal soft rays in addition to a total of 2 anal spines and 13-15 anal soft rays. A blunt snout is present on the head with a petite mouth and outsized eyes. Colour: Damsels show even distribution of black and white coloration with a yellow section separating both between the last dorsal spine and the anal fin (Fig. 1), however during mating, males under differentiation in their coloration (Schultz, 2008). There are colour variations depending on the geographic region and juveniles differ from the adults. UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION. Distribution is spread throughout the western Atlantic (Fig. 2), spanning from Florida to the Bahamas and the Caribbean with possible extension to Brazil (Rainer, n.d.). They are also found along the coast of Mexico. HABITAT AND ACTIVITY. Found at a depth of approximately 30m, damsels are found in habitats bordering coral reefs, that is areas of dead coral, boulders and man-made structures where algae is most likely to grow. -
The Importance of Live Coral Habitat for Reef Fishes and Its Role in Key Ecological Processes
ResearchOnline@JCU This file is part of the following reference: Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/23714/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/23714/ THE IMPORTANCE OF LIVE CORAL HABITAT FOR REEF FISHES AND ITS ROLE IN KEY ECOLOGICAL PROCESSES Thesis submitted by Darren J. Coker (B.Sc, GDipResMeth) May 2012 For the degree of Doctor of Philosophy In the ARC Centre of Excellence for Coral Reef Studies and AIMS@JCU James Cook University Townsville, Queensland, Australia Statement of access I, the undersigned, the author of this thesis, understand that James Cook University will make it available for use within the University Library and via the Australian Digital Thesis Network for use elsewhere. I understand that as an unpublished work this thesis has significant protection under the Copyright Act and I do not wish to put any further restrictions upon access to this thesis. Signature Date ii Statement of sources Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at my university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. -
Orientation of Pelagic Larvae of Coral-Reef Fishes in the Ocean
MARINE ECOLOGY PROGRESS SERIES Vol. 252: 239–253, 2003 Published April 30 Mar Ecol Prog Ser Orientation of pelagic larvae of coral-reef fishes in the ocean Jeffrey M. Leis*, Brooke M. Carson-Ewart Ichthyology, and Centre for Biodiversity and Conservation Research, Australian Museum, 6 College St, Sydney, New South Wales 2010, Australia ABSTRACT: During the day, we used settlement-stage reef-fish larvae from light-traps to study in situ orientation, 100 to 1000 m from coral reefs in water 10 to 40 m deep, at Lizard Island, Great Barrier Reef. Seven species were observed off leeward Lizard Island, and 4 species off the windward side. All but 1 species swam faster than average ambient currents. Depending on area, time, and spe- cies, 80 to 100% of larvae swam directionally. Two species of butterflyfishes Chaetodon plebeius and Chaetodon aureofasciatus swam away from the island, indicating that they could detect the island’s reefs. Swimming of 4 species of damselfishes Chromis atripectoralis, Chrysiptera rollandi, Neo- pomacentrus cyanomos and Pomacentrus lepidogenys ranged from highly directional to non- directional. Only in N. cyanomos did swimming direction differ between windward and leeward areas. Three species (C. atripectoralis, N. cyanomos and P. lepidogenys) were observed in morning and late afternoon at the leeward area, and all swam in a more westerly direction in the late after- noon. In the afternoon, C. atripectoralis larvae were highly directional in sunny conditions, but non- directional and individually more variable in cloudy conditions. All these observations imply that damselfish larvae utilized a solar compass. Caesio cuning and P. -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Quantitative Species-Level Ecology of Reef Fish Larvae Via Metabarcoding
ARTICLES https://doi.org/10.1038/s41559-017-0413-2 Quantitative species-level ecology of reef fish larvae via metabarcoding Naama Kimmerling1,2, Omer Zuqert3, Gil Amitai3, Tamara Gurevich2, Rachel Armoza-Zvuloni2,8, Irina Kolesnikov2, Igal Berenshtein1,2, Sarah Melamed3, Shlomit Gilad4, Sima Benjamin4, Asaph Rivlin2, Moti Ohavia2, Claire B. Paris 5, Roi Holzman 2,6*, Moshe Kiflawi 2,7* and Rotem Sorek 3* The larval pool of coral reef fish has a crucial role in the dynamics of adult fish populations. However, large-scale species-level monitoring of species-rich larval pools has been technically impractical. Here, we use high-throughput metabarcoding to study larval ecology in the Gulf of Aqaba, a region that is inhabited by >500 reef fish species. We analysed 9,933 larvae from 383 samples that were stratified over sites, depth and time. Metagenomic DNA extracted from pooled larvae was matched to a mitochondrial cytochrome c oxidase subunit I barcode database compiled for 77% of known fish species within this region. This yielded species-level reconstruction of the larval community, allowing robust estimation of larval spatio-temporal distribu- tions. We found significant correlations between species abundance in the larval pool and in local adult assemblages, suggest- ing a major role for larval supply in determining local adult densities. We documented larval flux of species whose adults were never documented in the region, suggesting environmental filtering as the reason for the absence of these species. Larvae of several deep-sea fishes were found in shallow waters, supporting their dispersal over shallow bathymetries, potentially allow- ing Lessepsian migration into the Mediterranean Sea. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts.