Bioactive Compounds Characterization and Antibacterial Potentials of Actinomycetes Isolated from Rhizospheric Soil
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Journal of Scientific & Industrial Research Vol. 78, November 2019, pp. 793-798 Bioactive Compounds characterization and Antibacterial Potentials of Actinomycetes isolated from Rhizospheric soil Nalinee Kumari1*, Ekta Menghani2 and Rekha Mithal3 *1Department of Microbiology, JECRC University, Jaipur, Rajasthan, India 2Department of Biotechnology, JECRC University, Jaipur, Rajasthan, India 3Department of Chemistry, JECRC College Jaipur, Rajasthan India Received 27 June 2018; revised 15 June 2019; accepted 14 September 2019 Due to acquired resistance produced by micro-organism against all frequently used antimicrobial agents, there is a great need of newer antibiotics to fight against different microbes. To explore the unknown diversity of microorganisms, soil screening for antimicrobial agents are performed for the detection of newer antibiotics from Actinomycetes. Studies were carried out with isolation of total 65 actinomycetes from rhizospheric soil of plants. Isolation and characterization of antimicrobial agents producing actinomycetes was performed and after screening some of isolates were having antimicrobial activity. Among them isolate AIA29 from rhizospheric soil was further studied for their potential. In the present study soil samples have been collected from different regions of Rajasthan. Isolation of actinomycetes was done on Actinomycetes Isolation Agar (AIA) media. Gram staining, characterization of colony and extraction of bioactive compounds was done by solvent extraction method. Antibacterial screening of crude extract was also performed against selected organisms like Staphylococcus aureus (MTCC-3160), Pseudomonas aeruginosa (MTCC-1688), Klebsiella pneumonia (MTCC-432), Proteus vulgaris (MTCC-7306), Bacillus subtilis (MTCC-441) procured from IMTECH Chandigarh. The extract showed inhibition zones (IZ) against Staphylococcus aureus (IZ= 33mm), Proteus vulgaris (IZ= 23mm) and Bacillus subtilis (IZ= 28mm). In GCMS analysis various compounds have been identified and compounds like Skatole, 3-methylpentane, Cyclohexane, Hexadecane, linoleic acid, Heptadecane, Nonadecane, Cyclotetradecane, Triacontane, Vinylbital, Ethosuximide and Stearyl alcohol, Dioctylpthalate was identified as having various activity. Keywords: Secondary metabolites, Rhizosphere, Actinomycetes, Antimicrobial Activity, Antibiotics Introduction and Actinoplanes produces commercially important Microbial diseases are expanding step by step and molecules. Approximately, 80% of total anti- they are turning into a major risk to human wellbeing. microbials have been delivered from streptomyces. There are in excess of 200 recognized diseases Various important anti-toxins and metabolites have transmitted by microscopic organisms, parasites, been gotten from terrestrial microorganisms4. From the infections, prions, rickettsia and different genera Streptomyces and Micromonospora, Numerous microorganisms to humans1. Methicillin resistant nutrients, anti-microbials, proteins and siderophores Staphylococcus aureus (MRSA) is one of the gotten by Actinomycetes have pharmaceutical, superbugs which are accountable of causing hazardous veterinary, rural and clinical significance. nosocomial infections. The advancement of new Actinomycetes are outstanding for their capacity to antimicrobial agents, ideally naturally happening ones create an abundance of regular items with basic with novel activity, is an upmost medicinal unpredictability and with various organic activities5. requirement2. Today, the creating of viable Actinomycetes are Gram positive, filamentous, spore antimicrobial agents is the actual challenge to the shaping, oxygen consuming microscopic organisms health care industry, particularly immune-compromised with cell divider containing L-L diaminopimelic patients and Multidrug resistance (MDR) pathogens. corrosive and with high G + C content (57–75%) in Among the every known actinomycete their DNA. Rare actinomycetes deliver remarkable particularly Streptomyces, Nocardiopsis species3, antibacterial effectiveness with the most assorted, Micromonospora, Saccharopolyspora, Amycolatopsis unique, and exceptional, with low toxicity6. Antibiotics such as imidazole compounds have been employed to ————— *Author for Correspondence treat dermatophytic infections possess a series of E-mail: [email protected] limitations such as undesirable side effects or rapid 794 J SCI IND RES VOL 78 NOVEMBER 2019 development of resistance7. Screening for novel Indicator organisms secondary metabolites was focused, so different types Screening was done by disc diffusion method and of colonies were isolated. There are many unexplored agar well diffusion method for the determination of regions and still need evaluation for a greater diversity antimicrobial activity of isolates with some of the test of novel actinomycetes with novel bioactive for this pathogens spread onto media plates. Antimicrobial reason, the present study evaluates morphological activity of isolates was performed against standard characteristics of isolates, characterization of cultures of IMTECH Chandigarh. 5 cultures were compounds extracted and their antimicrobial activity used as: Staphylococcus aureus (MTCC-3160), against test pathogens. Pseudomonas aeruginosa (MTCC-1688), Klebsiella pneumonia (MTCC-432), Proteus vulgaris (MTCC- Material and method 7306), Bacillus subtilis (MTCC-441). Location of sample collection Samples were collected from rhizospheric soil of Fermentation and centrifugation Luria broth was used for the construction of the different plants from different regions of Rajasthan antimicrobial metabolites in broth. For this process state. Collected soil samples were named as JPSN, 500 ml of the broth was prepared and distributed UDSN, KOSN, ALSN, because of their locations like broth into two sterilized Erlenmeyer flasks, 250ml Jaipur, Udaipur, Kota and Alwar. To avoid any broth in each flask. Culture was added to each flask. contamination, soil was collected with hand gloves in Flasks were kept in the shaker incubator at 150 Rpm clean, dry, sterile air tight bags from above mentioned at 300C for two-three weeks. Immediate after four locations. From 12-15 cm deep soil samples were incubation period is over, the cell suspension was collected and brought to laboratory for storage at 4ºC centrifuged at 5,000 Rpm for 20 min to separate the for further processing of samples. supernatant and the biomass. Only supernatant was 10 Isolation and characterization of actinomycetes collected separately and used for further procedures . Different samples were collected from different Isolation of mixture of compounds from culture broth sites of Rajasthan, India. These samples were After fermentation, from the fermented broth the collected from 12-15 cm depth in rhizospheric region mycelium was removed by filtration and then clear in sterile polythene bags in turn to keep away from filtrate was used to check antimicrobial activity. Then the other sources of contamination. For isolation of the isolation of anti-microbial compound was done actinomycetes dilutions were prepared upto 10-5 and from the filtrate by solvent extraction method. pour plate and spread plates were used for isolation of Antimicrobial compounds were extracted from the actinomycetes. Other technique used was sprinkle filtrate by solvent extraction with Pet ether, Benzene, method and plates were kept inverted at 37ºC in Ethyl acetate and Chloroform. Liquid - liquid incubator for 5-7 days. Media used for isolation of extraction was done with solvent mixed to the filtrate Actinomycetes was Actinomycetes Isolation Agar in 1:1 (v/v) ratio and shaken vigorously for complete (AIA) media. Total sixty five isolates were isolated on extraction of metabolites. It was kept undisturbed for Actinomycetes Isolation Agar (AIA) media. Among at least half an hour till 2 different layers get them some isolates were having potential activity separated clearly. Two layers when separated against indicator organisms. In the present study collected in different beakers. Solvent was evaporated AIA29 isolate was further studied for their 0 by keeping beakers on water bath at 50-60 C and antibacterial activity. Isolate AIA 29 was referred to crude remaining in beakers were measured and used gram staining and biochemical tests. Morphology of 11 for further testing . the actinomycetes colonies was determined and tests like Catalase, Urease, Casein hydrolysis, Citrate Antimicrobial potential of crude extract After solvent extraction process with Pet ether, utilization, Starch hydrolysis, Triple sugar test(TSI), 8 Benzene, Chloroform and Ethyl acetate solvent Motility, etc were performed . system and crude obtained from this was applied on Primary screening test pathogens/indicator organisms on the Muller Primary screening was done for detection of Hinton Agar (MHA) petri plates. By the Disc antimicrobial activity of isolates against five indicator diffusion method antibacterial activity test was carried organisms. Two methods were used for primary out against selected above mentioned cultures. Plates screening:- Disc diffusion and well agar method9,10. were kept at 370C for 24-48 hrs and results were noted KUMARI et al.: BIOACTIVE COMPOUNDS CHARACTERIZATION AND ANTIBACTERIAL POTENTIALS OF ACTINOMYCETES795 and complete zone of inhibition (IZ) was measured in AIA29 was noted against three test pathogens like millimeter (mm)8. Staphylococcus aureus, Proteus vulgaris, Bacillus subtilis and no activity was recorded against GC-MS analysis of bioactive compounds