Lecture 10: Strongly Connected Components, Biconnected Graphs
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Networkx: Network Analysis with Python
NetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users -
1 Vertex Connectivity 2 Edge Connectivity 3 Biconnectivity
1 Vertex Connectivity So far we've talked about connectivity for undirected graphs and weak and strong connec- tivity for directed graphs. For undirected graphs, we're going to now somewhat generalize the concept of connectedness in terms of network robustness. Essentially, given a graph, we may want to answer the question of how many vertices or edges must be removed in order to disconnect the graph; i.e., break it up into multiple components. Formally, for a connected graph G, a set of vertices S ⊆ V (G) is a separating set if subgraph G − S has more than one component or is only a single vertex. The set S is also called a vertex separator or a vertex cut. The connectivity of G, κ(G), is the minimum size of any S ⊆ V (G) such that G − S is disconnected or has a single vertex; such an S would be called a minimum separator. We say that G is k-connected if κ(G) ≥ k. 2 Edge Connectivity We have similar concepts for edges. For a connected graph G, a set of edges F ⊆ E(G) is a disconnecting set if G − F has more than one component. If G − F has two components, F is also called an edge cut. The edge-connectivity if G, κ0(G), is the minimum size of any F ⊆ E(G) such that G − F is disconnected; such an F would be called a minimum cut.A bond is a minimal non-empty edge cut; note that a bond is not necessarily a minimum cut. -
Simpler Sequential and Parallel Biconnectivity Augmentation
Simpler Sequential and Parallel Biconnectivity Augmentation Surabhi Jain and N.Sadagopan Department of Computer Science and Engineering, Indian Institute of Information Technology, Design and Manufacturing, Kancheepuram, Chennai, India. fsurabhijain,[email protected] Abstract. For a connected graph, a vertex separator is a set of vertices whose removal creates at least two components and a minimum vertex separator is a vertex separator of least cardinality. The vertex connectivity refers to the size of a minimum vertex separator. For a connected graph G with vertex connectivity k (k ≥ 1), the connectivity augmentation refers to a set S of edges whose augmentation to G increases its vertex connectivity by one. A minimum connectivity augmentation of G is the one in which S is minimum. In this paper, we focus our attention on connectivity augmentation of trees. Towards this end, we present a new sequential algorithm for biconnectivity augmentation in trees by simplifying the algorithm reported in [7]. The simplicity is achieved with the help of edge contraction tool. This tool helps us in getting a recursive subproblem preserving all connectivity information. Subsequently, we present a parallel algorithm to obtain a minimum connectivity augmentation set in trees. Our parallel algorithm essentially follows the overall structure of sequential algorithm. Our implementation is based on CREW PRAM model with O(∆) processors, where ∆ refers to the maximum degree of a tree. We also show that our parallel algorithm is optimal whose processor-time product is O(n) where n is the number of vertices of a tree, which is an improvement over the parallel algorithm reported in [3]. -
Networkx Reference Release 1.9.1
NetworkX Reference Release 1.9.1 Aric Hagberg, Dan Schult, Pieter Swart September 20, 2014 CONTENTS 1 Overview 1 1.1 Who uses NetworkX?..........................................1 1.2 Goals...................................................1 1.3 The Python programming language...................................1 1.4 Free software...............................................2 1.5 History..................................................2 2 Introduction 3 2.1 NetworkX Basics.............................................3 2.2 Nodes and Edges.............................................4 3 Graph types 9 3.1 Which graph class should I use?.....................................9 3.2 Basic graph types.............................................9 4 Algorithms 127 4.1 Approximation.............................................. 127 4.2 Assortativity............................................... 132 4.3 Bipartite................................................. 141 4.4 Blockmodeling.............................................. 161 4.5 Boundary................................................. 162 4.6 Centrality................................................. 163 4.7 Chordal.................................................. 184 4.8 Clique.................................................. 187 4.9 Clustering................................................ 190 4.10 Communities............................................... 193 4.11 Components............................................... 194 4.12 Connectivity.............................................. -
Strongly Connected Components and Biconnected Components
Strongly Connected Components and Biconnected Components Daniel Wisdom 27 January 2017 1 2 3 4 5 6 7 8 Figure 1: A directed graph. Credit: Crash Course Coding Companion. 1 Strongly Connected Components A strongly connected component (SCC) is a set of vertices where every vertex can reach every other vertex. In an undirected graph the SCCs are just the groups of connected vertices. We can find them using a simple DFS. This works because, in an undirected graph, u can reach v if and only if v can reach u. This is not true in a directed graph, which makes finding the SCCs harder. More on that later. 2 Kernel graph We can travel between any two nodes in the same strongly connected component. So what if we replaced each strongly connected component with a single node? This would give us what we call the kernel graph, which describes the edges between strongly connected components. Note that the kernel graph is a directed acyclic graph because any cycles would constitute an SCC, so the cycle would be compressed into a kernel. 3 1,2,5,6 4,7 8 Figure 2: Kernel graph of the above directed graph. 3 Tarjan's SCC Algorithm In a DFS traversal of the graph every SCC will be a subtree of the DFS tree. This subtree is not necessarily proper, meaning that it may be missing some branches which are their own SCCs. This means that if we can identify every node that is the root of its SCC in the DFS, we can enumerate all the SCCs. -
Analyzing Social Media Network for Students in Presidential Election 2019 with Nodexl
ANALYZING SOCIAL MEDIA NETWORK FOR STUDENTS IN PRESIDENTIAL ELECTION 2019 WITH NODEXL Irwan Dwi Arianto Doctoral Candidate of Communication Sciences, Airlangga University Corresponding Authors: [email protected] Abstract. Twitter is widely used in digital political campaigns. Twitter as a social media that is useful for building networks and even connecting political participants with the community. Indonesia will get a demographic bonus starting next year until 2030. The number of productive ages that will become a demographic bonus if not recognized correctly can be a problem. The election organizer must seize this opportunity for the benefit of voter participation. This study aims to describe the network structure of students in the 2019 presidential election. The first debate was held on January 17, 2019 as a starting point for data retrieval on Twitter social media. This study uses data sources derived from Twitter talks from 17 January 2019 to 20 August 2019 with keywords “#pilpres2019 OR #mahasiswa since: 2019-01-17”. The data obtained were analyzed by the communication network analysis method using NodeXL software. Our Analysis found that Top Influencer is @jokowi, as well as Top, Mentioned also @jokowi while Top Tweeters @okezonenews and Top Replied-To @hasmi_bakhtiar. Jokowi is incumbent running for re-election with Ma’ruf Amin (Senior Muslim Cleric) as his running mate against Prabowo Subianto (a former general) and Sandiaga Uno as his running mate (former vice governor). This shows that the more concentrated in the millennial generation in this case students are presidential candidates @jokowi. @okezonenews, the official twitter account of okezone.com (MNC Media Group). -
Assortativity and Mixing
Assortativity and Assortativity and Mixing General mixing between node categories Mixing Assortativity and Mixing Definition Definition I Assume types of nodes are countable, and are Complex Networks General mixing General mixing Assortativity by assigned numbers 1, 2, 3, . Assortativity by CSYS/MATH 303, Spring, 2011 degree degree I Consider networks with directed edges. Contagion Contagion References an edge connects a node of type µ References e = Pr Prof. Peter Dodds µν to a node of type ν Department of Mathematics & Statistics Center for Complex Systems aµ = Pr(an edge comes from a node of type µ) Vermont Advanced Computing Center University of Vermont bν = Pr(an edge leads to a node of type ν) ~ I Write E = [eµν], ~a = [aµ], and b = [bν]. I Requirements: X X X eµν = 1, eµν = aµ, and eµν = bν. µ ν ν µ Licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License. 1 of 26 4 of 26 Assortativity and Assortativity and Outline Mixing Notes: Mixing Definition Definition General mixing General mixing Assortativity by I Varying eµν allows us to move between the following: Assortativity by degree degree Definition Contagion 1. Perfectly assortative networks where nodes only Contagion References connect to like nodes, and the network breaks into References subnetworks. General mixing P Requires eµν = 0 if µ 6= ν and µ eµµ = 1. 2. Uncorrelated networks (as we have studied so far) Assortativity by degree For these we must have independence: eµν = aµbν . 3. Disassortative networks where nodes connect to nodes distinct from themselves. Contagion I Disassortative networks can be hard to build and may require constraints on the eµν. -
Graph and Network Analysis
Graph and Network Analysis Dr. Derek Greene Clique Research Cluster, University College Dublin Web Science Doctoral Summer School 2011 Tutorial Overview • Practical Network Analysis • Basic concepts • Network types and structural properties • Identifying central nodes in a network • Communities in Networks • Clustering and graph partitioning • Finding communities in static networks • Finding communities in dynamic networks • Applications of Network Analysis Web Science Summer School 2011 2 Tutorial Resources • NetworkX: Python software for network analysis (v1.5) http://networkx.lanl.gov • Python 2.6.x / 2.7.x http://www.python.org • Gephi: Java interactive visualisation platform and toolkit. http://gephi.org • Slides, full resource list, sample networks, sample code snippets online here: http://mlg.ucd.ie/summer Web Science Summer School 2011 3 Introduction • Social network analysis - an old field, rediscovered... [Moreno,1934] Web Science Summer School 2011 4 Introduction • We now have the computational resources to perform network analysis on large-scale data... http://www.facebook.com/note.php?note_id=469716398919 Web Science Summer School 2011 5 Basic Concepts • Graph: a way of representing the relationships among a collection of objects. • Consists of a set of objects, called nodes, with certain pairs of these objects connected by links called edges. A B A B C D C D Undirected Graph Directed Graph • Two nodes are neighbours if they are connected by an edge. • Degree of a node is the number of edges ending at that node. • For a directed graph, the in-degree and out-degree of a node refer to numbers of edges incoming to or outgoing from the node. -
Schematic Representation of Large Biconnected Graphs?
Schematic Representation of Large Biconnected Graphs? Giuseppe Di Battista, Fabrizio Frati, Maurizio Patrignani, and Marco Tais Roma Tre University, Rome, Italy fgdb,frati,patrigna,[email protected] Abstract. Suppose that a biconnected graph is given, consisting of a large component plus several other smaller components, each separated from the main component by a separation pair. We investigate the existence and the computation time of schematic representations of the structure of such a graph where the main component is drawn as a disk, the vertices that take part in separation pairs are points on the boundary of the disk, and the small components are placed outside the disk and are represented as non-intersecting lunes connecting their separation pairs. We consider several drawing conventions for such schematic representations, according to different ways to account for the size of the small components. We map the problem of testing for the existence of such representations to the one of testing for the existence of suitably constrained 1-page book-embeddings and propose several polynomial-time algorithms. 1 Introduction Many of today's applications are based on large-scale networks, having billions of vertices and edges. This spurred an intense research activity devoted to finding methods for the visualization of very large graphs. Several recent contributions focus on algorithms that produce drawings where either the graph is only partially represented or it is schematically visualized. Examples of the first type are proxy drawings [6,12], where a graph that is too large to be fully visualized is represented by the drawing of a much smaller proxy graph that preserves the main features of the original graph. -
Balanced Vertex-Orderings of Graphs
Balanced Vertex-Orderings of Graphs Therese Biedl 1 Timothy Chan 1 School of Computer Science, University of Waterloo Waterloo, ON N2L 3G1, Canada. Yashar Ganjali 2 Department of Electrical Engineering, Stanford University Stanford, CA 94305, U.S.A. MohammadTaghi Hajiaghayi 3 Laboratory for Computer Science, Massachusetts Institute of Technology Cambridge, MA 02139, U.S.A. David R. Wood 4,∗ School of Computer Science, Carleton University Ottawa, ON K1S 5B6, Canada. Abstract In this paper we consider the problem of determining a balanced ordering of the vertices of a graph; that is, the neighbors of each vertex v are as evenly distributed to the left and right of v as possible. This problem, which has applications in graph drawing for example, is shown to be NP-hard, and remains NP-hard for bipartite simple graphs with maximum degree six. We then describe and analyze a number of methods for determining a balanced vertex-ordering, obtaining optimal orderings for directed acyclic graphs, trees, and graphs with maximum degree three. For undirected graphs, we obtain a 13/8-approximation algorithm. Finally we consider the problem of determining a balanced vertex-ordering of a bipartite graph with a fixed ordering of one bipartition. When only the imbalances of the fixed vertices count, this problem is shown to be NP-hard. On the other hand, we describe an optimal linear time algorithm when the final imbalances of all vertices count. We obtain a linear time algorithm to compute an optimal vertex-ordering of a bipartite graph with one bipartition of constant size. Key words: graph algorithm, graph drawing, vertex-ordering. -
Pure Graph Algorithms
Lecture IV Page 1 “Liesez Euler, liesez Euler, c’est notre maˆıtre a´ tous” (Read Euler, read Euler, he is our master in everything) — Pierre-Simon Laplace (1749–1827) Lecture IV PURE GRAPH ALGORITHMS Graph Theory is said to have originated with Euler (1707–1783). The citizens of the city1 of K¨onigsberg asked him to resolve their favorite pastime question: is it possible to traverse all the 7 bridges joining two islands in the River Pregel and the mainland, without retracing any path? See Figure 1(a) for a schematic layout of these bridges. Euler recognized2 in this problem the essence of Leibnitz’s earlier interest in founding a new kind of mathematics called “analysis situs”. This can be interpreted as topological or combinatorial analysis in modern language. A graph correspondingto the 7 bridges and their interconnections is shown in Figure 1(b). Computational graph theory has a relatively recent history. Among the earliest papers on graph algorithms are Boruvka’s (1926) and Jarn´ık (1930) minimum spanning tree algorithm, and Dijkstra’s shortest path algorithm (1959). Tarjan [7] was one of the first to systematically study the DFS algorithm and its applications. A lucid account of basic graph theory is Bondy and Murty [3]; for algorithmic treatments, see Even [5] and Sedgewick [6]. A D B C The real bridge Credit: wikipedia (a) (b) Figure 1: The 7 Bridges of Konigsberg Graphs are useful for modeling abstract mathematical relations in computer science as well as in many other disciplines. Here are some examples of graphs: Adjacency between Countries Figure 2(a) shows a political map of 7 countries. -
A Generic Framework for the Topology-Shape-Metrics Based Layout
A Generic Framework for the Topology-Shape-Metrics Based Layout Paul Klose Master Thesis October 2012 Christian-Albrechts-Universität zu Kiel Real-Time and Embedded Systems Group Prof. Dr. Reinhard von Hanxleden Advised by: Dipl-Inf. Miro Spönemann Abstract Modeling is an important part of software engineering, but it is also used in many other areas of application. In that context the arrangement of diagram elements by hand is not efficient. Thus, layout algorithms are used to create or rearrange the diagram elements automatically in order to free users from this. However, different types of diagrams require different types of layout algorithms. Planarity and orthogonality are well-known drawing conventions for many domains such as UML class diagrams, circuit schemata or entity-relationship models. One approach to arrange such diagrams is considered by Roberto Tamassia and is called Topology-Shape-Metrics approach, which minimizes edge crossings and generates compact orthogonal grid drawings. This basic approach works with three phases: the planarization, the orthogonalization, and the compaction. The implementation of these phases are considered in this thesis in detail with respect to a generic, extensible architecture, such that every phase can be exchanged with different alternatives. This leads to a considerable amount of flexibility and expandability. Special handling of high-degree nodes has been implemented based on this architecture. Moreover, approach and implementation proposals for interactive planarization and for handling edge labels, hypergraphs and port constraints are presented. iii Eidesstattliche Erklärung Hiermit erkläre ich an Eides statt, dass ich die vorliegende Arbeit selbstständig verfasst und keine anderen als die angegebenen Quellen und Hilfsmittel verwendet habe.