Phylogeny of the Zygomycetous Family Mortierellaceae Inferred From
Data Partitions, Bayesian Analysis and Phylogeny of the Zygomycetous Fungal Family Mortierellaceae, Inferred from Nuclear Ribosomal DNA Sequences Tama´s Petkovits1,La´szlo´ G. Nagy1, Kerstin Hoffmann2,3, Lysett Wagner2,3, Ildiko´ Nyilasi1, Thasso Griebel4, Domenica Schnabelrauch5, Heiko Vogel5, Kerstin Voigt2,3, Csaba Va´gvo¨ lgyi1, Tama´s Papp1* 1 Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary, 2 Jena Microbial Resource Collection, Department of Microbiology and Molecular Biology, School of Biology and Pharmacy, Institute of Microbiology, University of Jena, Jena, Germany, 3 Department of Molecular and Applied Microbiology, Leibniz–Institute for Natural Product Research and Infection Biology (HKI), Jena, Germany, 4 Department of Bioinformatics, School of Mathematics and Informatics, Institute of Informatics, University of Jena, Jena, Germany, 5 Department of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany Abstract Although the fungal order Mortierellales constitutes one of the largest classical groups of Zygomycota, its phylogeny is poorly understood and no modern taxonomic revision is currently available. In the present study, 90 type and reference strains were used to infer a comprehensive phylogeny of Mortierellales from the sequence data of the complete ITS region and the LSU and SSU genes with a special attention to the monophyly of the genus Mortierella. Out of 15 alternative partitioning strategies compared on the basis of Bayes factors, the one with the highest number of partitions was found optimal (with mixture models yielding the best likelihood and tree length values), implying a higher complexity of evolutionary patterns in the ribosomal genes than generally recognized. Modeling the ITS1, 5.8S, and ITS2, loci separately improved model fit significantly as compared to treating all as one and the same partition.
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