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Diversity and Toxigenicity of Fungi That Cause Pineapple Fruitlet Core Rot
toxins Article Diversity and Toxigenicity of Fungi that Cause Pineapple Fruitlet Core Rot Bastien Barral 1,2,* , Marc Chillet 1,2, Anna Doizy 3 , Maeva Grassi 1, Laetitia Ragot 1, Mathieu Léchaudel 1,4, Noel Durand 1,5, Lindy Joy Rose 6 , Altus Viljoen 6 and Sabine Schorr-Galindo 1 1 Qualisud, Université de Montpellier, CIRAD, Montpellier SupAgro, Univ d’Avignon, Univ de La Reunion, F-34398 Montpellier, France; [email protected] (M.C.); [email protected] (M.G.); [email protected] (L.R.); [email protected] (M.L.); [email protected] (N.D.); [email protected] (S.S.-G.) 2 CIRAD, UMR Qualisud, F-97410 Saint-Pierre, Reunion, France 3 CIRAD, UMR PVBMT, F-97410 Saint-Pierre, Reunion, France; [email protected] 4 CIRAD, UMR Qualisud, F-97130 Capesterre-Belle-Eau, Guadeloupe, France 5 CIRAD, UMR Qualisud, F-34398 Montpellier, France 6 Department of Plant Pathology, Stellenbosch University, Private Bag X1, Matieland 7600, South Africa; [email protected] (L.J.R.); [email protected] (A.V.) * Correspondence: [email protected]; Tel.: +262-2-62-49-27-88 Received: 14 April 2020; Accepted: 14 May 2020; Published: 21 May 2020 Abstract: The identity of the fungi responsible for fruitlet core rot (FCR) disease in pineapple has been the subject of investigation for some time. This study describes the diversity and toxigenic potential of fungal species causing FCR in La Reunion, an island in the Indian Ocean. One-hundred-and-fifty fungal isolates were obtained from infected and healthy fruitlets on Reunion Island and exclusively correspond to two genera of fungi: Fusarium and Talaromyces. -
Taxonomy and Evolution of Aspergillus, Penicillium and Talaromyces in the Omics Era – Past, Present and Future
Computational and Structural Biotechnology Journal 16 (2018) 197–210 Contents lists available at ScienceDirect journal homepage: www.elsevier.com/locate/csbj Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era – Past, present and future Chi-Ching Tsang a, James Y.M. Tang a, Susanna K.P. Lau a,b,c,d,e,⁎, Patrick C.Y. Woo a,b,c,d,e,⁎ a Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong b Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong c State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong d Carol Yu Centre for Infection, The University of Hong Kong, Hong Kong e Collaborative Innovation Centre for Diagnosis and Treatment of Infectious Diseases, The University of Hong Kong, Hong Kong article info abstract Article history: Aspergillus, Penicillium and Talaromyces are diverse, phenotypically polythetic genera encompassing species im- Received 25 October 2017 portant to the environment, economy, biotechnology and medicine, causing significant social impacts. Taxo- Received in revised form 12 March 2018 nomic studies on these fungi are essential since they could provide invaluable information on their Accepted 23 May 2018 evolutionary relationships and define criteria for species recognition. With the advancement of various biological, Available online 31 May 2018 biochemical and computational technologies, different approaches have been adopted for the taxonomy of Asper- gillus, Penicillium and Talaromyces; for example, from traditional morphotyping, phenotyping to chemotyping Keywords: Aspergillus (e.g. lipotyping, proteotypingand metabolotyping) and then mitogenotyping and/or phylotyping. Since different Penicillium taxonomic approaches focus on different sets of characters of the organisms, various classification and identifica- Talaromyces tion schemes would result. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., ... Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. DOI: 10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. -
Identification and Nomenclature of the Genus Penicillium
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. Visagie1, J. Houbraken1*, J.C. Frisvad2*, S.-B. Hong3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, J. Varga7, T. Yaguchi8, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 3Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, Korea; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70126 Bari, Italy; 6Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közep fasor 52, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: Penicillium is a diverse genus occurring worldwide and its species play important roles as decomposers of organic materials and cause destructive rots in the food industry where they produce a wide range of mycotoxins. Other species are considered enzyme factories or are common indoor air allergens. Although DNA sequences are essential for robust identification of Penicillium species, there is currently no comprehensive, verified reference database for the genus. To coincide with the move to one fungus one name in the International Code of Nomenclature for algae, fungi and plants, the generic concept of Penicillium was re-defined to accommodate species from other genera, such as Chromocleista, Eladia, Eupenicillium, Torulomyces and Thysanophora, which together comprise a large monophyletic clade. -
Field Fungal Diversity in Freshly Harvested Maize 2
1 Field fungal diversity in freshly harvested maize 2 3 ABSTRACT: 4 Maize is a major crop in China and maize production in Heilongjiang province ranks 5 No.1 in the country in annual maize production in the whole country. Maize is prone to 6 invasion by fungi and mycotoxins produced by these fungi are proven to be serious threats to 7 animals as well as human health. Through high through-put sequencing we detected the 8 dominant phylum to be Ascomycota; Dothideomycetes, Sordariomycetes, Eurotiomycetes, and 9 Tremellomycetes, Saccharomycetes were the dominant classes; Hypocreales, Eurotiales, 10 Capnodiales, Saccharomycetales, Tremellales, and Pleosporales were the main orders; 11 Nectriaceae, Trichocomaceae, Cladosporiaceae, Debaryomycetaceae, Tremellaceae, and 12 Pleosporaceae were major families; Gibberella, Cladosporium, Papiliotrema, Penicillium, 13 Scheffersomyces, Talaromyces, and Epicoccum were the most abundant phylotypes at the 14 genus level. Epicoccum_nigrum, Gibberella_zeae, Papiliotrema_flavescens, and 15 Scheffersomyces_shehatae were the dominant fungal species. Great fungal diversity was 16 observed in the maize samples harvested in the five major maize-growing regions in 17 Heilongjiang province. Maize-1 in Nenjiang County was observed to have the greatest fungal 18 diversity and abundance among the five regions. Since some of the fungal species are 19 mycotoxin producing, it is necessary to take precautions to ensure the maize is stored under 20 safe conditions to prevent the occurrence of mycotoxins and the growth and reproduction of 21 other fungi which results in deterioration in the quality of maize. 22 23 Keywords: Fungi; diversity; maize; high through-put sequencing 24 25 1. INTRODUCTION 26 Maize (Zea mays L.) is an important foodstuff, feed, and raw material in China. -
Diversity and Communities of Fungal Endophytes from Four Pi‐ Nus Species in Korea
Supplementary materials Diversity and communities of fungal endophytes from four Pi‐ nus species in Korea Soon Ok Rim 1, Mehwish Roy 1, Junhyun Jeon 1, Jake Adolf V. Montecillo 1, Soo‐Chul Park 2 and Hanhong Bae 1,* 1 Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Republic of Korea 2 Crop Biotechnology Institute, Green Bio Science & Technology, Seoul National University, Pyeongchang, Kangwon 25354, Republic of Korea * Correspondence: [email protected]; tel: 8253‐810‐3031 (office); Fax: 8253‐810‐4769 Keywords: host specificity; fungal endophyte; fungal diversity; pine trees Table S1. Characteristics and conditions of 18 sampling sites in Korea. Ka Ca Mg Precipitation Temperature Organic Available Available Geographic Loca‐ Latitude Longitude Altitude Tree Age Electrical Con‐ pine species (mm) (℃) pH Matter Phosphate Silicic acid tions (o) (o) (m) (years) (cmol+/kg) dictivity 2016 2016 (g/kg) (mg/kg) (mg/kg) Ansung (1R) 37.0744580 127.1119200 70 45 284 25.5 5.9 20.8 252.4 0.7 4.2 1.7 0.4 123.2 Seosan (2R) 36.8906971 126.4491716 60 45 295.6 25.2 6.1 22.3 336.6 1.1 6.6 2.4 1.1 75.9 Pinus rigida Jungeup (3R) 35.5521138 127.0191565 240 45 205.1 27.1 5.3 30.4 892.7 1.0 5.8 1.9 0.2 7.9 Yungyang(4R) 36.6061179 129.0885334 250 43 323.9 23 6.1 21.4 251.2 0.8 7.4 2.8 0.1 96.2 Jungeup (1D) 35.5565492 126.9866204 310 50 205.1 27.1 5.3 30.4 892.7 1.0 5.8 1.9 0.2 7.9 Jejudo (2D) 33.3737599 126.4716048 1030 40 98.6 27.4 5.3 50.6 591.7 1.2 4.6 1.8 1.7 0.0 Pinus densiflora Hoengseong (3D) 37.5098629 128.1603840 540 45 360.1 -
Phylogeny and Nomenclature of the Genus Talaromyces and Taxa Accommodated in Penicillium Subgenus Biverticillium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector available online at www.studiesinmycology.org StudieS in Mycology 70: 159–183. 2011. doi:10.3114/sim.2011.70.04 Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium R.A. Samson1, N. Yilmaz1,6, J. Houbraken1,6, H. Spierenburg1, K.A. Seifert2, S.W. Peterson3, J. Varga4 and J.C. Frisvad5 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada, 3Bacterial Foodborne Pathogens and Mycology Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, U.S.A., 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary, 5Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800, Kgs. Lyngby, Denmark; 6Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: R.A. Samson, [email protected] Abstract: The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified inTalaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene. -
Species-Specific PCR to Describe Local-Scale Distributions of Four
fungal ecology 6 (2013) 419e429 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/funeco Species-specific PCR to describe local-scale distributions of four cryptic species in the Penicillium 5 chrysogenum complex Alexander G.P. BROWNE*, Matthew C. FISHER, Daniel A. HENK* Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom article info abstract Article history: Penicillium chrysogenum is a ubiquitous airborne fungus detected in every sampled region of Received 2 October 2012 the Earth. Owing to its role in Alexander Fleming’s serendipitous discovery of Penicillin in Revision received 8 March 2013 1928, the fungus has generated widespread scientific interest; however its natural history is Accepted 13 March 2013 not well understood. Research has demonstrated speciation within P. chrysogenum, Available online 15 June 2013 describing the existence of four cryptic species. To discriminate the four species, we Corresponding editor: developed protocols for species-specific diagnostic PCR directly from fungal conidia. 430 Gareth W. Griffith Penicillium isolates were collected to apply our rapid diagnostic tool and explore the dis- tribution of these fungi across the London Underground rail transport system revealing Keywords: significant differences between Underground lines. Phylogenetic analysis of multiple type Alexander Fleming isolates confirms that the ‘Fleming species’ should be named Penicillium rubens and that London Underground divergence of the four ‘Chrysogenum complex’ fungi occurred about 0.75 million yr ago. Mycology Finally, the formal naming of two new species, Penicillium floreyi and Penicillium chainii,is Penicillium chrysogenum performed. Phylogeny ª 2013 The Authors. Published by Elsevier Ltd. All rights reserved. Taxonomy Introduction In Sep. -
Genome Sequencing and Analysis of Talaromyces Pinophilus Provide
www.nature.com/scientificreports OPEN Genome sequencing and analysis of Talaromyces pinophilus provide insights into biotechnological Received: 4 October 2016 Accepted: 3 March 2017 applications Published: xx xx xxxx Cheng-Xi Li, Shuai Zhao, Ting Zhang, Liang Xian, Lu-Sheng Liao, Jun-Liang Liu & Jia-Xun Feng Species from the genus Talaromyces produce useful biomass-degrading enzymes and secondary metabolites. However, these enzymes and secondary metabolites are still poorly understood and have not been explored in depth because of a lack of comprehensive genetic information. Here, we report a 36.51-megabase genome assembly of Talaromyces pinophilus strain 1–95, with coverage of nine scaffolds of eight chromosomes with telomeric repeats at their ends and circular mitochondrial DNA. In total, 13,472 protein-coding genes were predicted. Of these, 803 were annotated to encode enzymes that act on carbohydrates, including 39 cellulose-degrading and 24 starch-degrading enzymes. In addition, 68 secondary metabolism gene clusters were identified, mainly including T1 polyketide synthase genes and nonribosomal peptide synthase genes. Comparative genomic analyses revealed that T. pinophilus 1–95 harbors more biomass-degrading enzymes and secondary metabolites than other related filamentous fungi. The prediction of theT. pinophilus 1–95 secretome indicated that approximately 50% of the biomass-degrading enzymes are secreted into the extracellular environment. These results expanded our genetic knowledge of the biomass-degrading enzyme system of T. pinophilus and its biosynthesis of secondary metabolites, facilitating the cultivation of T. pinophilus for high production of useful products. Talaromyces pinophilus, formerly designated Penicillium pinophilum, is a fungus that produces biomass-degrading enzymes such as α-amylase1, cellulase2, endoglucanase3, xylanase2, laccase4 and α-galactosidase2. -
New Xerophilic Species of Penicillium from Soil
Journal of Fungi Article New Xerophilic Species of Penicillium from Soil Ernesto Rodríguez-Andrade, Alberto M. Stchigel * and José F. Cano-Lira Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, Reus, 43201 Tarragona, Spain; [email protected] (E.R.-A.); [email protected] (J.F.C.-L.) * Correspondence: [email protected]; Tel.: +34-977-75-9341 Abstract: Soil is one of the main reservoirs of fungi. The aim of this study was to study the richness of ascomycetes in a set of soil samples from Mexico and Spain. Fungi were isolated after 2% w/v phenol treatment of samples. In that way, several strains of the genus Penicillium were recovered. A phylogenetic analysis based on internal transcribed spacer (ITS), beta-tubulin (BenA), calmodulin (CaM), and RNA polymerase II subunit 2 gene (rpb2) sequences showed that four of these strains had not been described before. Penicillium melanosporum produces monoverticillate conidiophores and brownish conidia covered by an ornate brown sheath. Penicillium michoacanense and Penicillium siccitolerans produce sclerotia, and their asexual morph is similar to species in the section Aspergilloides (despite all of them pertaining to section Lanata-Divaricata). P. michoacanense differs from P. siccitol- erans in having thick-walled peridial cells (thin-walled in P. siccitolerans). Penicillium sexuale differs from Penicillium cryptum in the section Crypta because it does not produce an asexual morph. Its ascostromata have a peridium composed of thick-walled polygonal cells, and its ascospores are broadly lenticular with two equatorial ridges widely separated by a furrow. All four new species are xerophilic. -
Advances in Food Mycology Advances in Experimental Medicine and Biology
Advances in Food Mycology Advances in Experimental Medicine and Biology Editorial Board: NATHAN BACK, State University of New York at Buffalo IRUN R. COHEN, The Weizmann Institute of Science DAVID KRITCHEVSKY, Wistar Institute ABEL LAJTHA, N.S. Kline Institute for Psychiatric Research RODOLFO PAOLETTI, University of Milan Recent Volumes in this Series Volume 563 UPDATES IN PATHOLOGY Edited by David C. Chhieng and Gene P. Siegal Volume 564 GLYCOBIOLOGY AND MEDICINE: PROCEEDINGS OF THE 7TH JENNER GLYCOBIOLOGY AND MEDICINE SYMPOSIUM Edited by John S. Axford Volume 565 SLIDING FILAMENT MECHANISM IN MUSCLE CONTRACTION: FIFTY YEARS OF RESEARCH Edited by Haruo Sugi Volume 566 OXYGEN TRANSPORT TO ISSUE XXVI Edited by Paul Okunieff, Jacqueline Williams, and Yuhchyau Chen Volume 567 THE GROWTH HORMONE-INSULIN-LIKE GROWTH FACTOR AXIS DURING DEVELOPMENT Edited by Isabel Varela-Nieto and Julie A. Chowen Volume 568 HOT TOPICS IN INFECTION AND IMMUNITY IN CHILDREN II Edited by Andrew J. Pollard and Adam Finn Volume 569 EARLY NUTRITION AND ITS LATER CONSEQUENCES: NEW OPPORTUNITIES Edited by Berthold Koletzko, Peter Dodds, Hans Akerbloom, and Margaret Ashwell Volume 570 GENOME INSTABILITY IN CANCER DEVELOPMENT Edited by Erich A. Nigg Volume 571 ADVANCES IN MYCOLOGY Edited by J.I. Pitts, A.D. Hocking, and U. Thrane A Continuation Order Plan is available for this series. A continuation order will bring delivery of each new volume immediately upon publication. Volumes are billed only upon actual shipment. For further information please contact the publisher. Advances in Food Mycology Edited by A.D. Hocking Food Science Australia North Ryde, Australia J.I. Pitt Food Science Australia North Ryde, Australia R.A. -
Paecilomyces and Its Importance in the Biological Control of Agricultural Pests and Diseases
plants Review Paecilomyces and Its Importance in the Biological Control of Agricultural Pests and Diseases Alejandro Moreno-Gavíra, Victoria Huertas, Fernando Diánez , Brenda Sánchez-Montesinos and Mila Santos * Departamento de Agronomía, Escuela Superior de Ingeniería, Universidad de Almería, 04120 Almería, Spain; [email protected] (A.M.-G.); [email protected] (V.H.); [email protected] (F.D.); [email protected] (B.S.-M.) * Correspondence: [email protected]; Tel.: +34-950-015511 Received: 17 November 2020; Accepted: 7 December 2020; Published: 10 December 2020 Abstract: Incorporating beneficial microorganisms in crop production is the most promising strategy for maintaining agricultural productivity and reducing the use of inorganic fertilizers, herbicides, and pesticides. Numerous microorganisms have been described in the literature as biological control agents for pests and diseases, although some have not yet been commercialised due to their lack of viability or efficacy in different crops. Paecilomyces is a cosmopolitan fungus that is mainly known for its nematophagous capacity, but it has also been reported as an insect parasite and biological control agent of several fungi and phytopathogenic bacteria through different mechanisms of action. In addition, species of this genus have recently been described as biostimulants of plant growth and crop yield. This review includes all the information on the genus Paecilomyces as a biological control agent for pests and diseases. Its growth rate and high spore production rate in numerous substrates ensures the production of viable, affordable, and efficient commercial formulations for agricultural use. Keywords: biological control; diseases; pests; Paecilomyces 1. Introduction The genus Paecilomyces was first described in 1907 [1] as a genus closely related to Penicillium and comprising only one species, P.