The Long-Term Carbon Cycle, Fossil Fuels and Atmospheric Composition Robert A
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CO2-Fixing One-Carbon Metabolism in a Cellulose-Degrading Bacterium
CO2-fixing one-carbon metabolism in a cellulose- degrading bacterium Clostridium thermocellum Wei Xionga, Paul P. Linb, Lauren Magnussona, Lisa Warnerc, James C. Liaob,d, Pin-Ching Manessa,1, and Katherine J. Choua,1 aBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401; bDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095; cNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401; and dAcademia Sinica, Taipei City, Taiwan 115 Edited by Lonnie O. Ingram, University of Florida, Gainesville, FL, and approved September 23, 2016 (received for review April 6, 2016) Clostridium thermocellum can ferment cellulosic biomass to for- proposed pathway involving CO2 utilization in C. thermocellum is mate and other end products, including CO2. This organism lacks the malate shunt and its variant pathway (7, 14), in which CO2 is formate dehydrogenase (Fdh), which catalyzes the reduction of first incorporated by phosphoenolpyruvate carboxykinase (PEPCK) 13 CO2 to formate. However, feeding the bacterium C-bicarbonate to form oxaloacetate and then is released either by malic enzyme or and cellobiose followed by NMR analysis showed the production via oxaloacetate decarboxylase complex, yielding pyruvate. How- of 13C-formate in C. thermocellum culture, indicating the presence ever, other pathways capable of carbon fixation may also exist but of an uncharacterized pathway capable of converting CO2 to for- remain uncharacterized. mate. Combining genomic and experimental data, we demon- In recent years, isotopic tracer experiments followed by mass strated that the conversion of CO2 to formate serves as a CO2 spectrometry (MS) (15, 16) or NMR measurements (17) have entry point into the reductive one-carbon (C1) metabolism, and emerged as powerful tools for metabolic analysis. -
B.-Gioli -Co2-Fluxes-In-Florance.Pdf
Environmental Pollution 164 (2012) 125e131 Contents lists available at SciVerse ScienceDirect Environmental Pollution journal homepage: www.elsevier.com/locate/envpol Methane and carbon dioxide fluxes and source partitioning in urban areas: The case study of Florence, Italy B. Gioli a,*, P. Toscano a, E. Lugato a, A. Matese a, F. Miglietta a,b, A. Zaldei a, F.P. Vaccari a a Institute of Biometeorology (IBIMET e CNR), Via G.Caproni 8, 50145 Firenze, Italy b FoxLab, Edmund Mach Foundation, Via E. Mach 1, San Michele all’Adige, Trento, Italy article info abstract Article history: Long-term fluxes of CO2, and combined short-term fluxes of CH4 and CO2 were measured with the eddy Received 15 September 2011 covariance technique in the city centre of Florence. CO2 long-term weekly fluxes exhibit a high Received in revised form seasonality, ranging from 39 to 172% of the mean annual value in summer and winter respectively, while 12 January 2012 CH fluxes are relevant and don’t exhibit temporal variability. Contribution of road traffic and domestic Accepted 14 January 2012 4 heating has been estimated through multi-regression models combined with inventorial traffic and CH4 consumption data, revealing that heating accounts for more than 80% of observed CO2 fluxes. Those two Keywords: components are instead responsible for only 14% of observed CH4 fluxes, while the major residual part is Eddy covariance fl Methane fluxes likely dominated by gas network leakages. CH4 uxes expressed as CO2 equivalent represent about 8% of Gas network leakages CO2 emissions, ranging from 16% in summer to 4% in winter, and cannot therefore be neglected when assessing greenhouse impact of cities. -
Drought and Ecosystem Carbon Cycling
Agricultural and Forest Meteorology 151 (2011) 765–773 Contents lists available at ScienceDirect Agricultural and Forest Meteorology journal homepage: www.elsevier.com/locate/agrformet Review Drought and ecosystem carbon cycling M.K. van der Molen a,b,∗, A.J. Dolman a, P. Ciais c, T. Eglin c, N. Gobron d, B.E. Law e, P. Meir f, W. Peters b, O.L. Phillips g, M. Reichstein h, T. Chen a, S.C. Dekker i, M. Doubková j, M.A. Friedl k, M. Jung h, B.J.J.M. van den Hurk l, R.A.M. de Jeu a, B. Kruijt m, T. Ohta n, K.T. Rebel i, S. Plummer o, S.I. Seneviratne p, S. Sitch g, A.J. Teuling p,r, G.R. van der Werf a, G. Wang a a Department of Hydrology and Geo-Environmental Sciences, Faculty of Earth and Life Sciences, VU-University Amsterdam, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands b Meteorology and Air Quality Group, Wageningen University and Research Centre, P.O. box 47, 6700 AA Wageningen, The Netherlands c LSCE CEA-CNRS-UVSQ, Orme des Merisiers, F-91191 Gif-sur-Yvette, France d Institute for Environment and Sustainability, EC Joint Research Centre, TP 272, 2749 via E. Fermi, I-21027 Ispra, VA, Italy e College of Forestry, Oregon State University, Corvallis, OR 97331-5752 USA f School of Geosciences, University of Edinburgh, EH8 9XP Edinburgh, UK g School of Geography, University of Leeds, Leeds LS2 9JT, UK h Max Planck Institute for Biogeochemistry, PO Box 100164, D-07701 Jena, Germany i Department of Environmental Sciences, Copernicus Institute of Sustainable Development, Utrecht University, PO Box 80115, 3508 TC Utrecht, The Netherlands j Institute of Photogrammetry and Remote Sensing, Vienna University of Technology, Gusshausstraße 27-29, 1040 Vienna, Austria k Geography and Environment, Boston University, 675 Commonwealth Avenue, Boston, MA 02215, USA l Department of Global Climate, Royal Netherlands Meteorological Institute, P.O. -
Phanerozoic Atmospheric CO Change
Earth-Science Reviews 54Ž. 2001 349–392 www.elsevier.comrlocaterearscirev Phanerozoic atmospheric CO2 change: evaluating geochemical and paleobiological approaches Dana L. Royer a,), Robert A. Berner a,1, David J. Beerling b,2 a Kline Geology Laboratory, Yale UniÕersity, P.O. Box 208109, New HaÕen, CT 06520-8109, USA b Department of Animal and Plant Sciences, UniÕersity of Sheffield, Sheffield S10 2TN, UK Accepted 8 November 2000 Abstract The theory and use of geochemical modeling of the long-term carbon cycle and four paleo-PCO2 proxies are reviewed and discussed in order to discern the best applications for each method. Geochemical models provide PCO2 predictions for the entire Phanerozoic, but most existing models present 5–10 m.y. means, and so often do not resolve short-term excursions. Error estimates based on sensitivity analyses range from "75–200 ppmV for the Tertiary to as much as "3000 ppmV during the early Paleozoic. 13 The d C of pedogenic carbonates provide the best proxy-based PCO2 estimates for the pre-Tertiary, with error estimates ranging from "500–1000 ppmV. Pre-Devonian estimates should be treated cautiously. Error estimates for Tertiary reconstructions via this proxy are higher than other proxies and models Ž."400–500 ppmV , and should not be solely relied upon. We also show the importance of measuring the d13C of coexisting organic matter instead of inferring its value from marine carbonates. The d13C of the organic remains of phytoplankton from sediment cores provide high temporal resolutionŽ up to 1034 –10 " " year.Ž , high precision 25–100 ppmV for the Tertiary to 150–200 ppmV for the Cretaceous . -
Forestry As a Natural Climate Solution: the Positive Outcomes of Negative Carbon Emissions
PNW Pacific Northwest Research Station INSIDE Tracking Carbon Through Forests and Streams . 2 Mapping Carbon in Soil. .3 Alaska Land Carbon Project . .4 What’s Next in Carbon Cycle Research . 4 FINDINGS issue two hundred twenty-five / march 2020 “Science affects the way we think together.” Lewis Thomas Forestry as a Natural Climate Solution: The Positive Outcomes of Negative Carbon Emissions IN SUMMARY Forests are considered a natural solu- tion for mitigating climate change David D’A more because they absorb and store atmos- pheric carbon. With Alaska boasting 129 million acres of forest, this state can play a crucial role as a carbon sink for the United States. Until recently, the vol- ume of carbon stored in Alaska’s forests was unknown, as was their future car- bon sequestration capacity. In 2007, Congress passed the Energy Independence and Security Act that directed the Department of the Inte- rior to assess the stock and flow of carbon in all the lands and waters of the United States. In 2012, a team com- posed of researchers with the U.S. Geological Survey, U.S. Forest Ser- vice, and the University of Alaska assessed how much carbon Alaska’s An unthinned, even-aged stand in southeast Alaska. New research on carbon sequestration in the region’s coastal temperate rainforests, and how this may change over the next 80 years, is helping land managers forests can sequester. evaluate tradeoffs among management options. The researchers concluded that ecosys- tems of Alaska could be a substantial “Stones have been known to move sunlight, water, and atmospheric carbon diox- carbon sink. -
Understanding Longterm Carbon Cycle Trends: the Late Paleocene Through
PALEOCEANOGRAPHY, VOL. 28, 1–13, doi:10.1002/palo.20060, 2013 Understanding long-term carbon cycle trends: The late Paleocene through the early Eocene N. Komar,1 R. E. Zeebe,1 and G. R. Dickens2,3 Received 13 June 2013; revised 5 September 2013; accepted 12 September 2013. [1] The late Paleocene to the early Eocene (58–52 Ma) was marked by significant changes in global climate and carbon cycling. The evidence for these changes includes stable isotope records that reveal prominent decreases in ı18Oandı13C, suggesting a rise in Earth’s surface temperature (4ıC) and a drop in net carbon output from the ocean and atmosphere. Concurrently, deep-sea carbonate records at several sites indicate a deepening of the calcite compensation depth (CCD). Here we investigate possible causes (e.g., increased volcanic degassing or decreased net organic burial) for these observations, but from a new perspective. The basic model employed is a modified version of GEOCARB III. However, we have coupled this well-known geochemical model to LOSCAR (Long-term Ocean-atmosphere Sediment CArbon cycle Reservoir model), which enables simulation of seawater carbonate chemistry, the CCD, and ocean ı13C. We have also added a capacitor, in this case represented by gas hydrates, that can store and release 13C-depleted carbon to and from the shallow geosphere over millions of years. We further consider accurate input data (e.g., ı13C of carbonate) on a currently accepted timescale that spans an interval much longer than the perturbation. Several different scenarios are investigated with the goal of consistency amongst inferred changes in temperature, the CCD, and surface ocean and deep ocean ı13C. -
Carbon Cycling and Biosequestration Integrating Biology and Climate Through Systems Science March 2008 Workshop Report
Carbon Cycling and Biosequestration Integrating Biology and Climate through Systems Science March 2008 Workshop Report http://genomicsgtl.energy.gov/carboncycle/ ne of the most daunting challenges facing science in processes that drive the global carbon cycle, (2) achieve greater the 21st Century is to predict how Earth’s ecosystems integration of experimental biology and biogeochemical mod- will respond to global climate change. The global eling approaches, (3) assess the viability of potential carbon Ocarbon cycle plays a central role in regulating atmospheric biosequestration strategies, and (4) develop novel experimental carbon dioxide (CO2) levels and thus Earth’s climate, but our approaches to validate climate model predictions. basic understanding of the myriad tightly interlinked biologi- cal processes that drive the global carbon cycle remains lim- A Science Strategy for the Future ited. Whether terrestrial and ocean ecosystems will capture, Understanding and predicting processes of the global carbon store, or release carbon is highly dependent on how changing cycle will require bold new research approaches aimed at linking climate conditions affect processes performed by the organ- global-scale climate phenomena; biogeochemical processes of isms that form Earth’s biosphere. Advancing our knowledge ecosystems; and functional activities encoded in the genomes of of biological components of the global carbon cycle is crucial microbes, plants, and biological communities. This goal presents to predicting potential climate change impacts, assessing the a formidable challenge, but emerging systems biology research viability of climate change adaptation and mitigation strate- approaches provide new opportunities to bridge the knowledge gies, and informing relevant policy decisions. gap between molecular- and global-scale phenomena. -
The Carbon Cycle
The Carbon Cycle Overview of the Carbon Cycle The movement of carbon from one area to another is the basis for the carbon cycle. Carbon is important for all life on Earth. All living things are made up of carbon. Carbon is produced by both natural and human-made (anthropogenic) sources. Carbon Cycle Page 1 Nature’s Carbon Sources Carbon is found in the Carbon is found in the lithosphere Carbon is found in the Carbon is found in the atmosphere mostly as carbon in the form of carbonate rocks. biosphere stored in plants and hydrosphere dissolved in ocean dioxide. Animal and plant Carbonate rocks came from trees. Plants use carbon dioxide water and lakes. respiration place carbon into ancient marine plankton that sunk from the atmosphere to make the atmosphere. When you to the bottom of the ocean the building blocks of food Carbon is used by many exhale, you are placing carbon hundreds of millions of years ago during photosynthesis. organisms to produce shells. dioxide into the atmosphere. that were then exposed to heat Marine plants use cabon for and pressure. photosynthesis. The organic matter that is produced Carbon is also found in fossil fuels, becomes food in the aquatic such as petroleum (crude oil), coal, ecosystem. and natural gas. Carbon is also found in soil from dead and decaying animals and animal waste. Carbon Cycle Page 2 Natural Carbon Releases into the Atmosphere Carbon is released into the atmosphere from both natural and man-made causes. Here are examples to how nature places carbon into the atmosphere. -
Guide to Best Practices for Ocean CO2 Measurements
Guide to Best Practices for Ocean C0 for to Best Practices Guide 2 probe Measurments to digital thermometer thermometer probe to e.m.f. measuring HCl/NaCl system titrant burette out to thermostat bath combination electrode In from thermostat bath mL Metrohm Dosimat STIR Guide to Best Practices for 2007 This Guide contains the most up-to-date information available on the Ocean CO2 Measurements chemistry of CO2 in sea water and the methodology of determining carbon system parameters, and is an attempt to serve as a clear and PICES SPECIAL PUBLICATION 3 unambiguous set of instructions to investigators who are setting up to SPECIAL PUBLICATION PICES IOCCP REPORT No. 8 analyze these parameters in sea water. North Pacific Marine Science Organization 3 PICES SP3_Cover.indd 1 12/13/07 4:16:07 PM Publisher Citation Instructions North Pacific Marine Science Organization Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. P.O. Box 6000 Guide to Best Practices for Ocean CO2 Measurements. Sidney, BC V8L 4B2 PICES Special Publication 3, 191 pp. Canada www.pices.int Graphic Design Cover and Tabs Caveat alkemi creative This report was developed under the guidance of the Victoria, BC, Canada PICES Science Board and its Section on Carbon and climate. The views expressed in this report are those of participating scientists under their responsibilities. ISSN: 1813-8519 ISBN: 1-897176-07-4 This book is printed on FSC certified paper. The cover contains 10% post-consumer recycled content. PICES SP3_Cover.indd 2 12/13/07 4:16:11 PM Guide to Best Practices for Ocean CO2 Measurements PICES SPECIAL PUBLICATION 3 IOCCP REPORT No. -
Newsletter 56
Newsletter of the International Association of GeoChemistry Number 56, May 2012 FROM THE PRESIDENT IAGC members, 2011 has been a good, successful year for our organisation. The GES-9 (Geochemistry * * * * * at the Earth‟s Surface) and the AIG-9 (Applied Isotope Geochemistry) Working Groups symposia were well attended and - - NEWS FLASH - - the participating members I had the chance to talk with were very satisfied with both events. In a way, both meetings demonstrated that there is a need for such smaller conferences, with 100-300 participants and a well-defined topic. They just provide better chances to meet and hold discussions with fellow scientists having similar interests, and it‟s easier to make new friends than at many of the major events with thousands of participants (though Council sometimes discusses whether it would not be nice for IAGC to have such a major money earning event Applied Geochemistry vol.27 no.5 contains rather than having to sponsor a diversity of contributions from the special session small meetings). honouring Professor Iain Thornton at the SEGH 2010 conference on 'Environmental 2012 is one of those years where most of Quality and Human Health'. These include our awards are bestowed, starting with our papers on soil ingestion, arsenic and lead most prestigious award, the Vernadsky distribution and exposure, and in situ vs ex medal. You will find the announcements for situ measurements. Athens passwords all awards in this issue of the Newsletter needed for offsite access. For more details, and I congratulate all award recipients on see page 17. behalf of the IAGC. -
Permafrost Soils and Carbon Cycling
SOIL, 1, 147–171, 2015 www.soil-journal.net/1/147/2015/ doi:10.5194/soil-1-147-2015 SOIL © Author(s) 2015. CC Attribution 3.0 License. Permafrost soils and carbon cycling C. L. Ping1, J. D. Jastrow2, M. T. Jorgenson3, G. J. Michaelson1, and Y. L. Shur4 1Agricultural and Forestry Experiment Station, Palmer Research Center, University of Alaska Fairbanks, 1509 South Georgeson Road, Palmer, AK 99645, USA 2Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA 3Alaska Ecoscience, Fairbanks, AK 99775, USA 4Department of Civil and Environmental Engineering, University of Alaska Fairbanks, Fairbanks, AK 99775, USA Correspondence to: C. L. Ping ([email protected]) Received: 4 October 2014 – Published in SOIL Discuss.: 30 October 2014 Revised: – – Accepted: 24 December 2014 – Published: 5 February 2015 Abstract. Knowledge of soils in the permafrost region has advanced immensely in recent decades, despite the remoteness and inaccessibility of most of the region and the sampling limitations posed by the severe environ- ment. These efforts significantly increased estimates of the amount of organic carbon stored in permafrost-region soils and improved understanding of how pedogenic processes unique to permafrost environments built enor- mous organic carbon stocks during the Quaternary. This knowledge has also called attention to the importance of permafrost-affected soils to the global carbon cycle and the potential vulnerability of the region’s soil or- ganic carbon (SOC) stocks to changing climatic conditions. In this review, we briefly introduce the permafrost characteristics, ice structures, and cryopedogenic processes that shape the development of permafrost-affected soils, and discuss their effects on soil structures and on organic matter distributions within the soil profile. -
GEOCARBSULF: a Combined Model for Phanerozoic Atmospheric O2 and CO2
Geochimica et Cosmochimica Acta 70 (2006) 5653–5664 www.elsevier.com/locate/gca GEOCARBSULF: A combined model for Phanerozoic atmospheric O2 and CO2 Robert A. Berner * Department of Geology and Geophysics, Yale University, New Haven, CT 06520-8109, USA Received 13 June 2005; accepted in revised form 1 November 2005 Abstract A model for the combined long-term cycles of carbon and sulfur has been constructed which combines all the factors modifying weathering and degassing of the GEOCARB III model [Berner R.A., Kothavala Z., 2001. GEOCARB III: a revised model of atmospher- ic CO2 over Phanerozoic time. Am. J. Sci. 301, 182–204] for CO2 with rapid recycling and oxygen dependent carbon and sulfur isotope fractionation of an isotope mass balance model for O2 [Berner R.A., 2001. Modeling atmospheric O2 over Phanerozoic time. Geochim. Cosmochim. Acta 65, 685–694]. New isotopic data for both carbon and sulfur are used and new feedbacks are created by combining the models. Sensitivity analysis is done by determining (1) the effect on weathering rates of using rapid recycling (rapid recycling treats car- bon and sulfur weathering in terms of young rapidly weathering rocks and older more slowly weathering rocks); (2) the effect on O2 of using different initial starting conditions; (3) the effect on O2 of using different data for carbon isotope fractionation during photosyn- 13 thesis and alternative values of oceanic d C for the past 200 million years; (4) the effect on sulfur isotope fractionation and on O2 of varying the size of O2 feedback during sedimentary pyrite formation; (5) the effect on O2 of varying the dependence of organic matter and pyrite weathering on tectonic uplift plus erosion, and the degree of exposure of coastal lands by sea level change; (6) the effect on CO2 of adding the variability of volcanic rock weathering over time [Berner, R.A., 2006.