Chapter 9. State of Deep-Sea Coral and Sponge Ecosystems of the U.S
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Bacterial Diseases of Crabs: a Review ⇑ W
Journal of Invertebrate Pathology 106 (2011) 18–26 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Minireview Bacterial diseases of crabs: A review ⇑ W. Wang Jiangsu Key Laboratory for Biodiversity & Biotechnology and Jiangsu Key Laboratory for Aquatic Crustacean Diseases, College of Life Sciences, Nanjing Normal University, Nanjing 210046, China article info abstract Keywords: Bacterial diseases of crabs are manifested as bacteremias caused by organisms such as Vibrio, Aeromo- Bacteria nas, and a Rhodobacteriales-like organism or tissue and organ tropic organisms such as chitinoclastic Disease bacteria, Rickettsia intracellular organisms, Chlamydia-like organism, and Spiroplasma. This paper pro- Crab vides general information about bacterial diseases of both marine and freshwater crabs. Some bacteria pathogens such as Vibrio cholerae and Vibrio vulnificus occur commonly in blue crab haemolymph and should be paid much attention to because they may represent potential health hazards to human beings because they can cause serious diseases when the crab is consumed as raw sea food. With the development of aquaculture, new diseases associated with novel pathogens such as spiroplasmas and Rhodobacteriales-like organisms have appeared in commercially exploited crab species in recent years. Many potential approaches to control bacterial diseases of crab will be helpful and practicable in aquaculture. Ó 2010 Published by Elsevier Inc. Contents 1. Introduction ......................................................................................................... -
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Taxonomic Checklist of CITES Listed Coral Species Part II
CoP16 Doc. 43.1 (Rev. 1) Annex 5.2 (English only / Únicamente en inglés / Seulement en anglais) Taxonomic Checklist of CITES listed Coral Species Part II CORAL SPECIES AND SYNONYMS CURRENTLY RECOGNIZED IN THE UNEP‐WCMC DATABASE 1. Scleractinia families Family Name Accepted Name Species Author Nomenclature Reference Synonyms ACROPORIDAE Acropora abrolhosensis Veron, 1985 Veron (2000) Madrepora crassa Milne Edwards & Haime, 1860; ACROPORIDAE Acropora abrotanoides (Lamarck, 1816) Veron (2000) Madrepora abrotanoides Lamarck, 1816; Acropora mangarevensis Vaughan, 1906 ACROPORIDAE Acropora aculeus (Dana, 1846) Veron (2000) Madrepora aculeus Dana, 1846 Madrepora acuminata Verrill, 1864; Madrepora diffusa ACROPORIDAE Acropora acuminata (Verrill, 1864) Veron (2000) Verrill, 1864; Acropora diffusa (Verrill, 1864); Madrepora nigra Brook, 1892 ACROPORIDAE Acropora akajimensis Veron, 1990 Veron (2000) Madrepora coronata Brook, 1892; Madrepora ACROPORIDAE Acropora anthocercis (Brook, 1893) Veron (2000) anthocercis Brook, 1893 ACROPORIDAE Acropora arabensis Hodgson & Carpenter, 1995 Veron (2000) Madrepora aspera Dana, 1846; Acropora cribripora (Dana, 1846); Madrepora cribripora Dana, 1846; Acropora manni (Quelch, 1886); Madrepora manni ACROPORIDAE Acropora aspera (Dana, 1846) Veron (2000) Quelch, 1886; Acropora hebes (Dana, 1846); Madrepora hebes Dana, 1846; Acropora yaeyamaensis Eguchi & Shirai, 1977 ACROPORIDAE Acropora austera (Dana, 1846) Veron (2000) Madrepora austera Dana, 1846 ACROPORIDAE Acropora awi Wallace & Wolstenholme, 1998 Veron (2000) ACROPORIDAE Acropora azurea Veron & Wallace, 1984 Veron (2000) ACROPORIDAE Acropora batunai Wallace, 1997 Veron (2000) ACROPORIDAE Acropora bifurcata Nemenzo, 1971 Veron (2000) ACROPORIDAE Acropora branchi Riegl, 1995 Veron (2000) Madrepora brueggemanni Brook, 1891; Isopora ACROPORIDAE Acropora brueggemanni (Brook, 1891) Veron (2000) brueggemanni (Brook, 1891) ACROPORIDAE Acropora bushyensis Veron & Wallace, 1984 Veron (2000) Acropora fasciculare Latypov, 1992 ACROPORIDAE Acropora cardenae Wells, 1985 Veron (2000) CoP16 Doc. -
A Revision of Heritschioides Yabe, 1950 (Anthozoa, Rugosa), Latest Mississippian and Earliest Pennsylvanian of Western North America
Palaeontologia Electronica palaeo-electronica.org A revision of Heritschioides Yabe, 1950 (Anthozoa, Rugosa), latest Mississippian and earliest Pennsylvanian of western North America Jerzy Fedorowski, E. Wayne Bamber, and Calvin H. Stevens ABSTRACT New data from a detailed study of the type and topotype collections of the type species of Heritschioides confirm the unique status of the genus as colonial and bear- ing extra septal lamellae. The associated microfossils establish its age as late Serpuk- hovian to early Bashkirian. The close connection of the cardinal septum to the median lamella and the axial structure points to the family Aulophyllidae. However, the incon- sistent role of the protosepta in the formation of the median lamella is unique for Herits- chioides. This feature and the colonial growth form allow its assignment to a separate subfamily, the Heritschioidinae Sando, 1985, which is closely related to the subfamily Aulophyllinae. So far, the subfamily Heritschioidinae is known to occur only in rocks along the western margin of North America. Jerzy Fedorowski. Institute of Geology, Adam Mickiewicz University, Maków Polnych 16, Pl-61-606, Poznań, Poland. [email protected] E. Wayne Bamber. Geological Survey of Canada (Calgary), 3303-33rd Street N. W., Calgary, Alberta T2L 2A7, Canada. [email protected] Calvin H. Stevens. Department of Geology, San Jose State University, San Jose, California 95192, USA. [email protected] Keywords: Late Serpukhovian-early Bashkirian; colonial coral; type specimens; western North America; allochthonous terranes. INTRODUCTION lated structural block on a ridge northwest of Blind Creek, approximately 6.5 kilometers east of Corals here assigned to the genus Heritschioi- Keremeos in southern British Columbia, Canada des were first described by Smith (1935) from (48°12’20”N, 119°43’20”W; Figure 1). -
Paleontology, Stratigraphy, Paleoenvironment and Paleogeography of the Seventy Tethyan Maastrichtian-Paleogene Foraminiferal Species of Anan, a Review
Journal of Microbiology & Experimentation Review Article Open Access Paleontology, stratigraphy, paleoenvironment and paleogeography of the seventy Tethyan Maastrichtian-Paleogene foraminiferal species of Anan, a review Abstract Volume 9 Issue 3 - 2021 During the last four decades ago, seventy foraminiferal species have been erected by Haidar Salim Anan the present author, which start at 1984 by one recent agglutinated foraminiferal species Emirates Professor of Stratigraphy and Micropaleontology, Al Clavulina pseudoparisensis from Qusseir-Marsa Alam stretch, Red Sea coast of Egypt. Azhar University-Gaza, Palestine After that year tell now, one planktic foraminiferal species Plummerita haggagae was erected from Egypt (Misr), two new benthic foraminiferal genera Leroyia (with its 3 species) Correspondence: Haidar Salim Anan, Emirates Professor of and Lenticuzonaria (2 species), and another 18 agglutinated species, 3 porcelaneous, 26 Stratigraphy and Micropaleontology, Al Azhar University-Gaza, Lagenid and 18 Rotaliid species. All these species were recorded from Maastrichtian P. O. Box 1126, Palestine, Email and/or Paleogene benthic foraminiferal species. Thirty nine species of them were erected originally from Egypt (about 58 %), 17 species from the United Arab Emirates, UAE (about Received: May 06, 2021 | Published: June 25, 2021 25 %), 8 specie from Pakistan (about 11 %), 2 species from Jordan, and 1 species from each of Tunisia, France, Spain and USA. More than one species have wide paleogeographic distribution around the Northern and Southern Tethys, i.e. Bathysiphon saidi (Egypt, UAE, Hungary), Clavulina pseudoparisensis (Egypt, Saudi Arabia, Arabian Gulf), Miliammina kenawyi, Pseudoclavulina hamdani, P. hewaidyi, Saracenaria leroyi and Hemirobulina bassiounii (Egypt, UAE), Tritaxia kaminskii (Spain, UAE), Orthokarstenia nakkadyi (Egypt, Tunisia, France, Spain), Nonionella haquei (Egypt, Pakistan). -
Biodiversity of the Kermadec Islands and Offshore Waters of the Kermadec Ridge: Report of a Coastal, Marine Mammal and Deep-Sea Survey (TAN1612)
Biodiversity of the Kermadec Islands and offshore waters of the Kermadec Ridge: report of a coastal, marine mammal and deep-sea survey (TAN1612) New Zealand Aquatic Environment and Biodiversity Report No. 179 Clark, M.R.; Trnski, T.; Constantine, R.; Aguirre, J.D.; Barker, J.; Betty, E.; Bowden, D.A.; Connell, A.; Duffy, C.; George, S.; Hannam, S.; Liggins, L..; Middleton, C.; Mills, S.; Pallentin, A.; Riekkola, L.; Sampey, A.; Sewell, M.; Spong, K.; Stewart, A.; Stewart, R.; Struthers, C.; van Oosterom, L. ISSN 1179-6480 (online) ISSN 1176-9440 (print) ISBN 978-1-77665-481-9 (online) ISBN 978-1-77665-482-6 (print) January 2017 Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries websites at: http://www.mpi.govt.nz/news-resources/publications.aspx http://fs.fish.govt.nz go to Document library/Research reports © Crown Copyright - Ministry for Primary Industries TABLE OF CONTENTS EXECUTIVE SUMMARY 1 1. INTRODUCTION 3 1.1 Objectives: 3 1.2 Objective 1: Benthic offshore biodiversity 3 1.3 Objective 2: Marine mammal research 4 1.4 Objective 3: Coastal biodiversity and connectivity 5 2. METHODS 5 2.1 Survey area 5 2.2 Survey design 6 Offshore Biodiversity 6 Marine mammal sampling 8 Coastal survey 8 Station recording 8 2.3 Sampling operations 8 Multibeam mapping 8 Photographic transect survey 9 Fish and Invertebrate sampling 9 Plankton sampling 11 Catch processing 11 Environmental sampling 12 Marine mammal sampling 12 Dive sampling operations 12 Outreach 13 3. -
Deep-Sea Origin and In-Situ Diversification of Chrysogorgiid Octocorals
Deep-Sea Origin and In-Situ Diversification of Chrysogorgiid Octocorals Eric Pante1*¤, Scott C. France1, Arnaud Couloux2, Corinne Cruaud2, Catherine S. McFadden3, Sarah Samadi4, Les Watling5,6 1 Department of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana, United States of America, 2 GENOSCOPE, Centre National de Se´quenc¸age, Evry, France, 3 Department of Biology, Harvey Mudd College, Claremont, California, United States of America, 4 De´partement Syste´matique et Evolution, UMR 7138 UPMC-IRD-MNHN- CNRS (UR IRD 148), Muse´um national d’Histoire naturelle, Paris, France, 5 Department of Biology, University of Hawaii at Manoa, Honolulu, Hawaii, United States of America, 6 Darling Marine Center, University of Maine, Walpole, Maine, United States of America Abstract The diversity, ubiquity and prevalence in deep waters of the octocoral family Chrysogorgiidae Verrill, 1883 make it noteworthy as a model system to study radiation and diversification in the deep sea. Here we provide the first comprehensive phylogenetic analysis of the Chrysogorgiidae, and compare phylogeny and depth distribution. Phylogenetic relationships among 10 of 14 currently-described Chrysogorgiidae genera were inferred based on mitochondrial (mtMutS, cox1) and nuclear (18S) markers. Bathymetric distribution was estimated from multiple sources, including museum records, a literature review, and our own sampling records (985 stations, 2345 specimens). Genetic analyses suggest that the Chrysogorgiidae as currently described is a polyphyletic family. Shallow-water genera, and two of eight deep-water genera, appear more closely related to other octocoral families than to the remainder of the monophyletic, deep-water chrysogorgiid genera. Monophyletic chrysogorgiids are composed of strictly (Iridogorgia Verrill, 1883, Metallogorgia Versluys, 1902, Radicipes Stearns, 1883, Pseudochrysogorgia Pante & France, 2010) and predominantly (Chrysogorgia Duchassaing & Michelotti, 1864) deep-sea genera that diversified in situ. -
Sponge Community Structure and Anti-Predator Defenses on Temperate Reefs of the South Atlantic Bight
Georgia Southern University Digital Commons@Georgia Southern Electronic Theses and Dissertations Graduate Studies, Jack N. Averitt College of Fall 2005 Sponge Community Structure and Anti-Predator Defenses on Temperate Reefs of the South Atlantic Bight Richard Robert Ruzicka Follow this and additional works at: https://digitalcommons.georgiasouthern.edu/etd Recommended Citation Ruzicka, Richard Robert, "Sponge Community Structure and Anti-Predator Defenses on Temperate Reefs of the South Atlantic Bight" (2005). Electronic Theses and Dissertations. 705. https://digitalcommons.georgiasouthern.edu/etd/705 This thesis (open access) is brought to you for free and open access by the Graduate Studies, Jack N. Averitt College of at Digital Commons@Georgia Southern. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons@Georgia Southern. For more information, please contact [email protected]. SPONGE COMMUNITY STRUCTURE AND ANTI-PREDATOR DEFENSES ON TEMPERATES REEFS OF THE SOUTH ATLANTIC BIGHT by RICHARD ROBERT RUZICKA III Under the Direction of Daniel F. Gleason ABSTRACT The interaction between predation and anti-predator defenses of prey is important in shaping community structure in all ecosystems. This study examined the relationship between sponge predation and the distribution of sponge anti-predator defenses on temperate reefs in the South Atlantic Bight. Significant differences in the distribution of sponge species, sponge densities, and densities of sponge predators were documented across two adjacent reef habitats. Significant differences also occurred in the distribution of sponge chemical and structural defenses with chemical deterrence significantly greater in sponges associated with the habitat having higher predation intensity. Structural defenses, although effective in some instances, appear to be inadequate against spongivorous predators thereby restricting the distribution of sponge species lacking chemical defenses to habitats with lower predation intensity. -
Phylogenetic Relationships Within Chrysogorgia (Alcyonacea
Phylogenetic Relationships Within Chrysogorgia (Alcyonacea: Octocorallia), a Morphologically Diverse Genus of Octocoral, Revealed Using a Target Enrichment Approach Candice Untiedt, Andrea Quattrini, Catherine Mcfadden, Phil Alderslade, Eric Pante, Christopher Burridge To cite this version: Candice Untiedt, Andrea Quattrini, Catherine Mcfadden, Phil Alderslade, Eric Pante, et al.. Phy- logenetic Relationships Within Chrysogorgia (Alcyonacea: Octocorallia), a Morphologically Diverse Genus of Octocoral, Revealed Using a Target Enrichment Approach. Frontiers in Marine Science, Frontiers Media, 2021, 7, 10.3389/fmars.2020.599984. hal-03154113 HAL Id: hal-03154113 https://hal.sorbonne-universite.fr/hal-03154113 Submitted on 27 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmars-07-599984 January 11, 2021 Time: 10:55 # 1 ORIGINAL RESEARCH published: 12 January 2021 doi: 10.3389/fmars.2020.599984 Phylogenetic Relationships Within Chrysogorgia (Alcyonacea: Octocorallia), a Morphologically Diverse Genus of Octocoral, Revealed Using a Target Enrichment