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Population Size and the Rate of Evolution
Review Population size and the rate of evolution 1,2 1 3 Robert Lanfear , Hanna Kokko , and Adam Eyre-Walker 1 Ecology Evolution and Genetics, Research School of Biology, Australian National University, Canberra, ACT, Australia 2 National Evolutionary Synthesis Center, Durham, NC, USA 3 School of Life Sciences, University of Sussex, Brighton, UK Does evolution proceed faster in larger or smaller popu- mutations occur and the chance that each mutation lations? The relationship between effective population spreads to fixation. size (Ne) and the rate of evolution has consequences for The purpose of this review is to synthesize theoretical our ability to understand and interpret genomic varia- and empirical knowledge of the relationship between tion, and is central to many aspects of evolution and effective population size (Ne, Box 1) and the substitution ecology. Many factors affect the relationship between Ne rate, which we term the Ne–rate relationship (NeRR). A and the rate of evolution, and recent theoretical and positive NeRR implies faster evolution in larger popula- empirical studies have shown some surprising and tions relative to smaller ones, and a negative NeRR implies sometimes counterintuitive results. Some mechanisms the opposite (Figure 1A,B). Although Ne has long been tend to make the relationship positive, others negative, known to be one of the most important factors determining and they can act simultaneously. The relationship also the substitution rate [5–8], several novel predictions and depends on whether one is interested in the rate of observations have emerged in recent years, causing some neutral, adaptive, or deleterious evolution. Here, we reassessment of earlier theory and highlighting some gaps synthesize theoretical and empirical approaches to un- in our understanding. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
IN EVOLUTION JACK LESTER KING UNIVERSITY of CALIFORNIA, SANTA BARBARA This Paper Is Dedicated to Retiring University of California Professors Curt Stern and Everett R
THE ROLE OF MUTATION IN EVOLUTION JACK LESTER KING UNIVERSITY OF CALIFORNIA, SANTA BARBARA This paper is dedicated to retiring University of California Professors Curt Stern and Everett R. Dempster. 1. Introduction Eleven decades of thought and work by Darwinian and neo-Darwinian scientists have produced a sophisticated and detailed structure of evolutionary ,theory and observations. In recent years, new techniques in molecular biology have led to new observations that appear to challenge some of the basic theorems of classical evolutionary theory, precipitating the current crisis in evolutionary thought. Building on morphological and paleontological observations, genetic experimentation, logical arguments, and upon mathematical models requiring simplifying assumptions, neo-Darwinian theorists have been able to make some remarkable predictions, some of which, unfortunately, have proven to be inaccurate. Well-known examples are the prediction that most genes in natural populations must be monomorphic [34], and the calculation that a species could evolve at a maximum rate of the order of one allele substitution per 300 genera- tions [13]. It is now known that a large proportion of gene loci are polymorphic in most species [28], and that evolutionary genetic substitutions occur in the human line, for instance, at a rate of about 50 nucleotide changes per generation [20], [24], [25], [26]. The puzzling observation [21], [40], [46], that homologous proteins in different species evolve at nearly constant rates is very difficult to account for with classical evolutionary theory, and at the very least gives a solid indication that there are qualitative differences between the ways molecules evolve and the ways morphological structures evolve. -
80 Years of Watching the Evolutionary Scenery
80 years of watching the evolutionary scenery ERNST MAYR Having reached the rare age of 100 years, I find myself in There are a multitude of reasons why so many controver- a unique position: I’m the last survivor of the golden age sies about evolution emerged during that period. For in- of the Evolutionary Synthesis. That status encourages me stance, the philosophy of science at that time was totally to present a personal account of what I experienced in the dominated by physics and by typology (essentialism). years (1920s to the 1950s) that were so crucial in the history This philosophy was appropriate for the physical sciences of evolutionary biology. but entirely unsuitable as a foundation for theories dealing Evolutionary biology in its first 90 years (1859 to the with biological populations (see below). Perhaps more 1940s) consisted of two widely divergent fields: evolu- important was the fact that the paradigm of Darwinian tionary change in populations and biodiversity, the domains evolution was not a single theory, as Darwin always insis- of geneticists and naturalists (systematicists), respec- ted, but was actually composed of five quite independent tively. Histories covering this period were usually written theories.* Two of these were readily accepted by the by geneticists, who often neglected the evolution of bio- Darwinians: the simple fact of evolution (the “non-cons- diversity. As I am a naturalist, I consider this neglect to tancy of species” as Darwin called it) and the branching be a grave deficiency of most historical treatments. theory of common descent. The other three—gradual evolu- Curiously, I cannot pinpoint the age at which I became tion, the multiplication of species, and natural selection— an evolutionist. -
Punctuated Equilibrium Vs. Phyletic Gradualism
International Journal of Bio-Science and Bio-Technology Vol. 3, No. 4, December, 2011 Punctuated Equilibrium vs. Phyletic Gradualism Monalie C. Saylo1, Cheryl C. Escoton1 and Micah M. Saylo2 1 University of Antique, Sibalom, Antique, Philippines 2 DepEd Sibalom North District, Sibalom, Antique, Philippines [email protected] Abstract Both phyletic gradualism and punctuated equilibrium are speciation theory and are valid models for understanding macroevolution. Both theories describe the rates of speciation. For Gradualism, changes in species is slow and gradual, occurring in small periodic changes in the gene pool, whereas for Punctuated Equilibrium, evolution occurs in spurts of relatively rapid change with long periods of non-change. The gradualism model depicts evolution as a slow steady process in which organisms change and develop slowly over time. In contrast, the punctuated equilibrium model depicts evolution as long periods of no evolutionary change followed by rapid periods of change. Both are models for describing successive evolutionary changes due to the mechanisms of evolution in a time frame. Keywords: macroevolution, phyletic gradualism, punctuated equilibrium, speciation, evolutionary change 1. Introduction Has the evolution of life proceeded as a gradual stepwise process, or through relatively long periods of stasis punctuated by short periods of rapid evolution? To date, what is clear is that both evolutionary patterns – phyletic gradualism and punctuated equilibrium have played at least some role in the evolution of life. Gradualism and punctuated equilibrium are two ways in which the evolution of a species can occur. A species can evolve by only one of these, or by both. Scientists think that species with a shorter evolution evolved mostly by punctuated equilibrium, and those with a longer evolution evolved mostly by gradualism. -
5. EVOLUTION AS a POPULATION-GENETIC PROCESS 5 April 2020
æ 5. EVOLUTION AS A POPULATION-GENETIC PROCESS 5 April 2020 With knowledge on rates of mutation, recombination, and random genetic drift in hand, we now consider how the magnitudes of these population-genetic features dictate the paths that are open vs. closed to evolutionary exploitation in various phylogenetic lineages. Because historical contingencies exist throughout the Tree of Life, we cannot expect to derive from first principles the source of every molecular detail of cellular diversification. We can, however, use established theory to address more general issues, such as the degree of attainable molecular refinement, rates of transition from one state to another, and the degree to which nonadaptive processes (mutation and random genetic drift) contribute to phylogenetic diversification. Substantial reviews of the field of evolutionary theory appear in Charlesworth and Charlesworth (2010) and Walsh and Lynch (2018). Much of the field is con- cerned with the mechanisms maintaining genetic variation within populations, as this ultimately dictates various aspects of the short-term response to selection. Here, however, we are primarily concerned with long-term patterns of phylogenetic diver- sification, so the focus is on the divergence of mean phenotypes. This still requires some knowledge of the principles of population genetics, as evolutionary divergence is ultimately a consequence of the accrual of genetic modifications at the population level. All evolutionary change initiates as a transient phase of genetic polymor- phism, during which mutant alleles navigate the rough sea of random genetic drift, often being evaluated on various genetic backgrounds, with some paths being more accessible to natural selection than others. -
Speciation and Bursts of Evolution
Evo Edu Outreach (2008) 1:274–280 DOI 10.1007/s12052-008-0049-4 ORIGINAL SCIENTIFIC ARTICLE Speciation and Bursts of Evolution Chris Venditti & Mark Pagel Published online: 5 June 2008 # Springer Science + Business Media, LLC 2008 Abstract A longstanding debate in evolutionary biology Darwin’s gradualistic view of evolution has become widely concerns whether species diverge gradually through time or accepted and deeply carved into biological thinking. by rapid punctuational bursts at the time of speciation. The Over 110 years after Darwin introduced the idea of natural theory of punctuated equilibrium states that evolutionary selection in his book The Origin of Species, two young change is characterised by short periods of rapid evolution paleontologists put forward a controversial new theory of the followed by longer periods of stasis in which no change tempo and mode of evolutionary change. Niles Eldredge and occurs. Despite years of work seeking evidence for Stephen Jay Gould’s(Eldredge1971; Eldredge and Gould punctuational change in the fossil record, the theory 1972)theoryofPunctuated Equilibria questioned Darwin’s remains contentious. Further there is little consensus as to gradualistic account of evolution, asserting that the majority the size of the contribution of punctuational changes to of evolutionary change occurs at or around the time of overall evolutionary divergence. Here we review recent speciation. They further suggested that very little change developments which show that punctuational evolution is occurred between speciation events—aphenomenonthey common and widespread in gene sequence data. referred to as evolutionary stasis. Eldredge and Gould had arrived at their theory by Keywords Speciation . Evolution . Phylogeny. -
Molecular Lamarckism: on the Evolution of Human Intelligence
World Futures The Journal of New Paradigm Research ISSN: 0260-4027 (Print) 1556-1844 (Online) Journal homepage: https://www.tandfonline.com/loi/gwof20 Molecular Lamarckism: On the Evolution of Human Intelligence Fredric M. Menger To cite this article: Fredric M. Menger (2017) Molecular Lamarckism: On the Evolution of Human Intelligence, World Futures, 73:2, 89-103, DOI: 10.1080/02604027.2017.1319669 To link to this article: https://doi.org/10.1080/02604027.2017.1319669 © 2017 The Author(s). Published with license by Taylor & Francis Group, LLC© Fredric M. Menger Published online: 26 May 2017. Submit your article to this journal Article views: 3145 View related articles View Crossmark data Citing articles: 1 View citing articles Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=gwof20 World Futures, 73: 89–103, 2017 Copyright © Fredric M. Menger ISSN: 0260-4027 print / 1556-1844 online DOI: 10.1080/02604027.2017.1319669 MOLECULAR LAMARCKISM: ON THE EVOLUTION OF HUMAN INTELLIGENCE Fredric M. Menger Emory University, Atlanta, Georgia, USA In modern times, Lamarck’s view of evolution, based on inheritance of acquired traits has been superseded by neo-Darwinism, based on random DNA mutations. This article begins with a series of observations suggesting that Lamarckian inheritance is in fact operative throughout Nature. I then launch into a discussion of human intelligence that is the most important feature of human evolution that cannot be easily explained by mutational -
RECOMBINATION and the RATE of EVOLUTION HE Process Of
Symposium on Genetic Exchange : XI11 International Congress of Genetics RECOMBINATION AND THE RATE OF EVOLUTION J. h4AYNARD SMITH School of Biological Sciences, University of Sussex, Brighton, Sussex, England HE process of genetic recombination has evolved because it confers a selec- tive advantage on its possessors. Two fundamentally different suggestions have been made as to the nature of this selective advantage. The first, originating with WEISMANN(1904) and formulated more precisely by FISHER(1930) and MULLER(1932), is that populations with genetic recombination evolve more rapidly than those without, and hence survive environmental changes which cause the extinction of asexual populations. Although widely accepted, this explanation has a drawback (which was clearly recognized by FISHER); it relies on selection acting between groups or species and not between individuals. It is the species which evolves or goes extinct, not the individual. To the extent that species go extinct much less frequently than individuals die, group selection is less effective than individual selection. This has led some evolutionists to doubt whether an adaptation as complex as sexual reproduction and genetic recombi- nation could have evolved by a process as inefficient as group selection. The alternative explanation, strongly argued by WILLIAMS(1968, 1973), is that recombination is an immediate advantage because an individual which produces a more variable progeny is more likely to produce at least some off- spring of very high fitness. If inter-individual selection is very intense, so that only those individuals with the optimal genotype for the local environment are able to survive, it is possible that sexual reproduction might be an immediate advantage. -
Genetic Drift & Inbreeding Contd
•Novel mutation (AA subst) fixes every 2 yrs on av. (Kimura) Genetic Drift & Inbreeding contd.... •Clocklike sequence evolution (Zuckerkandl & Pauling) !!! The rate at which two populations divergence (fix differences in DNA sequences) is 2tun, where t = time of last common ancestor un= neutral mutation rate 1 4 !""Pseudogenes ! Silent substitutions > replacement substitutions But - Variation amongst loci is evidence of functional constraints - Some proteins seq undergo clocklike change, irrespective of generation time !!! Currently:!!! •Serves as Null model •Evidence is accumulating but most likely Neutral Theory is overstated 2 5 The rate of evolution by drift alone…. ‘The Shifting Balance’ - Sewall Wright, 1931 Fitness surface/Adaptive landscape At a single locus substitution !!!= fixation of new mutation 1: Drift 2: Selection 3: Migration 3 6 HW Assumptions Inbreeding & Assortative mating are different • No selection Inbreeding -> mating with • No mutation relatives (more similar resemblance on av., but not • No migration necessarily for any particular trait) • No random!!! events Assortative mating -> mating • Pop. infinitely large, stable, with equal sex ratio based on dis/similar traits; may/may not be relatives • Mating within population at random (panmixia) e.g. humans 7 10 Population genetic model Inbreeding -> mating with relatives Non-random e.g. Fig wasps mating? 8 11 Mating Systems Consequences of non-random mating Random mating mating independent of genotype or phenotype Inbreeding coefficient -> F Inbreeding mating between -
R-ES-ONAN--CE-!-JU-Ly--2-0-0-5
Not every scientist is fortunate enough to live up to a ripe age ofa hundred years and get an opportunity to reflect on eighty years ofa wonderfully productive scientific career. Ernst Mayr, who was one of the main architects of the evolutionary synthesis of the past century, is one of the few who attained this rare distinction. What follows is an extraordinary personal account of the history of 20th century evolution ary biology, straight from the horse's mouth. Especially for students of biology, the insight he provides on the controversies and intellectual conflicts in biology, they may never find in any text book. S Mahadevan 80 Years of Watching the Evolutionary Scenery Ernst Mayr Having reached the rare age of 100 years, I find myselfin a unique position: I'm the last survivor of the golden age of the Evolutionary Synthesis. That status encourages me to present a personal account of what I experienced in the years (1920s to the 1950s) that were so crucial in the history of evolutionary biology. Evolutionary biology in its first 90 years (1859 to the 1940s) consisted of two widely divergent fields: evolutionary change in populations and biodiversity, the domains of geneticists and naturalists (systematicists), respectively. Histories covering this period were usually written by geneticists, who often neglected the evolution ofbio-diversity. As I am a naturalist, I consider this neglect to be a grave deficiency of most historical treatments. Curiously, I cannot pinpoint the age at which I became an evolutionist. I received all of my education in Germany, where evolution was not really controversial. -
Trémaux on Species 1 Nelson and Wilkins
Trémaux on species 1 Nelson and Wilkins Trémaux on species: A theory of allopatric speciation (and punctuated equilibrium) before Wagner John S. Wilkinsi and Gareth J. Nelsonii Abstract Pierre Trémaux’s 1865 ideas on speciation have been unjustly derided following his acceptance by Marx and rejection by Engels, and almost nobody has read his ideas in a charitable light. Here we offer an interpretation based on translating the term sol as “habitat”, in order to show that Trémaux proposed a theory of allopatric speciation before Wagner and a punctuated equilibrium theory before Gould and Eldredge, and translate the relevant discussion from the French. We believe he may have influenced Darwin’s revision to the third edition of the Origin on rates of evolution, and suggest that Gould’s dismissal of Trémaux is motivated by concern that others might think punctuated equilibrium theory was tainted by a connection with Trémaux. Introduction Pierre Trémaux (1818–1895) is not well known. Although he holds a place in the history of photography for his photographs taken during a trip down the Nile to the Sudan in 1847iii and he later published one of the first illustrated geographical books, his anthropological and biological work would have received little notice except for the fact that Karl Marx praised him over Darwin. As one of us wrote back in 1989: Trémaux’s writings were never well known. Perhaps they deserve the oblivion into which they have fallen, but their general theme of earth and life evolving together accords well with the spirit of our modern concerns i Department of Philosophy, University of Queensland, Brisbane 4072, Australia ii School of Botany, University of Melbourne, Melbourne 3010, Australia iii Trémaux was well regarded for a series of anthropological articles based on his journey to the Sudan (Trémaux 1849, 1850, 1855, 1856, 1862a, 1862b).