William Albert Setchell 1864-1943
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Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, f g h i,j,k e Pavel Skaloud , Charles F. Delwiche , Andrew H. Knoll , John A. Raven , Heroen Verbruggen , Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2, and Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, 9000 Ghent, Belgium; bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Zwijnaarde, Belgium; cVlaams Instituut voor Biotechnologie Center for Plant Systems Biology, 9052 Zwijnaarde, Belgium; dBioinformatics Institute Ghent, Ghent University, 9052 Zwijnaarde, Belgium; eSchool of Biosciences, University of Melbourne, Melbourne, VIC 3010, Australia; fDepartment of Botany, Faculty of Science, Charles University, CZ-12800 Prague 2, Czech Republic; gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742; hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; jSchool of Biological Sciences, University of Western Australia, WA 6009, Australia; kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia; and lMeise Botanic Garden, 1860 Meise, Belgium Edited by Pamela S. Soltis, University of Florida, Gainesville, FL, and approved December 13, 2019 (received for review June 11, 2019) The Neoproterozoic Era records the transition from a largely clear interpretation of how many times and when green seaweeds bacterial to a predominantly eukaryotic phototrophic world, creat- emerged from unicellular ancestors (8). ing the foundation for the complex benthic ecosystems that have There is general consensus that an early split in the evolution sustained Metazoa from the Ediacaran Period onward. -
1 Integrative Biology 200 "PRINCIPLES OF
Integrative Biology 200 "PRINCIPLES OF PHYLOGENETICS" Spring 2018 University of California, Berkeley B.D. Mishler March 14, 2018. Classification II: Phylogenetic taxonomy including incorporation of fossils; PhyloCode I. Phylogenetic Taxonomy - the argument for rank-free classification A number of recent calls have been made for the reformation of the Linnaean hierarchy (e.g., De Queiroz & Gauthier, 1992). These authors have emphasized that the existing system is based in a non-evolutionary world-view; the roots of the Linnaean hierarchy are in a specially- created world-view. Perhaps the idea of fixed, comparable ranks made some sense under that view, but under an evolutionary world view they don't make sense. There are several problems with the current nomenclatorial system: 1. The current system, with its single type for a name, cannot be used to precisely name a clade. E.g., you may name a family based on a certain type specimen, and even if you were clear about what node you meant to name in your original publication, the exact phylogenetic application of your name would not be clear subsequently, after new clades are added. 2. There are not nearly enough ranks to name the thousands of levels of monophyletic groups in the tree of life. Therefore people are increasingly using informal rank-free names for higher- level nodes, but without any clear, formal specification of what clade is meant. 3. Most aspects of the current code, including priority, revolve around the ranks, which leads to instability of usage. For example, when a change in relationships is discovered, several names often need to be changed to adjust, including those of groups whose circumscription has not changed. -
Seashore Beaty Box #007) Adaptations Lesson Plan and Specimen Information
Table of Contents (Seashore Beaty Box #007) Adaptations lesson plan and specimen information ..................................................................... 27 Welcome to the Seashore Beaty Box (007)! .................................................................................. 28 Theme ................................................................................................................................................... 28 How can I integrate the Beaty Box into my curriculum? .......................................................... 28 Curriculum Links to the Adaptations Lesson Plan ......................................................................... 29 Science Curriculum (K-9) ................................................................................................................ 29 Science Curriculum (10-12 Drafts 2017) ...................................................................................... 30 Photos: Unpacking Your Beaty Box .................................................................................................... 31 Tray 1: ..................................................................................................................................................... 31 Tray 2: .................................................................................................................................................... 31 Tray 3: .................................................................................................................................................. -
A Comprehensive Kelp Phylogeny Sheds Light on the Evolution of an T Ecosystem ⁎ Samuel Starkoa,B,C, , Marybel Soto Gomeza, Hayley Darbya, Kyle W
Molecular Phylogenetics and Evolution 136 (2019) 138–150 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A comprehensive kelp phylogeny sheds light on the evolution of an T ecosystem ⁎ Samuel Starkoa,b,c, , Marybel Soto Gomeza, Hayley Darbya, Kyle W. Demesd, Hiroshi Kawaie, Norishige Yotsukuraf, Sandra C. Lindstroma, Patrick J. Keelinga,d, Sean W. Grahama, Patrick T. Martonea,b,c a Department of Botany & Biodiversity Research Centre, The University of British Columbia, 6270 University Blvd., Vancouver V6T 1Z4, Canada b Bamfield Marine Sciences Centre, 100 Pachena Rd., Bamfield V0R 1B0, Canada c Hakai Institute, Heriot Bay, Quadra Island, Canada d Department of Zoology, The University of British Columbia, 6270 University Blvd., Vancouver V6T 1Z4, Canada e Department of Biology, Kobe University, Rokkodaicho 657-8501, Japan f Field Science Center for Northern Biosphere, Hokkaido University, Sapporo 060-0809, Japan ARTICLE INFO ABSTRACT Keywords: Reconstructing phylogenetic topologies and divergence times is essential for inferring the timing of radiations, Adaptive radiation the appearance of adaptations, and the historical biogeography of key lineages. In temperate marine ecosystems, Speciation kelps (Laminariales) drive productivity and form essential habitat but an incomplete understanding of their Kelp phylogeny has limited our ability to infer their evolutionary origins and the spatial and temporal patterns of their Laminariales diversification. Here, we -
Codium Pulvinatum (Bryopsidales, Chlorophyta), a New Species from the Arabian Sea, Recently Introduced Into the Mediterranean Sea
Phycologia Volume 57 (1), 79–89 Published 6 November 2017 Codium pulvinatum (Bryopsidales, Chlorophyta), a new species from the Arabian Sea, recently introduced into the Mediterranean Sea 1 2 3 4 5 RAZY HOFFMAN *, MICHAEL J. WYNNE ,TOM SCHILS ,JUAN LOPEZ-BAUTISTA AND HEROEN VERBRUGGEN 1School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv 69978, Israel 2University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108, USA 3University of Guam Marine Laboratory, Mangilao, Guam 96923, USA 4Biological Sciences, University of Alabama, Box 35487, Tuscaloosa, Alabama 35487, USA 5School of Biosciences, University of Melbourne, Victoria 3010, Australia ABSTRACT: Codium pulvinatum sp. nov. (Bryopsidales, Chlorophyta) is described from the southern shores of Oman and from the Mediterranean shore of Israel. The new species has a pulvinate to mamillate–globose habit and long narrow utricles. Molecular data from the rbcL gene show that the species is distinct from closely related species, and concatenated rbcL and rps3–rpl16 sequence data show that it is not closely related to other species with similar external morphologies. The recent discovery of well-established populations of C. pulvinatum along the central Mediterranean coast of Israel suggests that it is a new Lessepsian migrant into the Mediterranean Sea. The ecology and invasion success of the genus Codium, now with four alien species reported for the Levantine Sea, and some ecological aspects are also discussed in light of the discovery of the new species. KEY WORDS: Codium pulvinatum, Israel, Lessepsian migrant, Levantine Sea, Oman, rbcL, rps3–rpl16 INTRODUCTION updated), except for ‘TAU’. All investigated specimens are listed in Table S1 (collecting data table). -
Codium(Chlorophyta) Species Presented in the Galápagos Islands
Hidrobiológica 2016, 26 (2): 151-159 Codium (Chlorophyta) species presented in the Galápagos Islands Las especies del género Codium (Chlorophyta) presentes en las Islas Galápagos Max E. Chacana1, Paul C. Silva1, Francisco F. Pedroche1, 2 and Kathy Ann Miller1 1University Herbarium, University of California, Berkeley, CA 94720-2465. USA 2Depto. Ciencias Ambientales, Universidad Autónoma Metropolitana, Unidad Lerma, Estado de México, 52007. México e-mail: [email protected] Chacana M. E., P. C. Silva, F. F. Pedroche and K. A. Miller. 2016. Codium (Chlorophyta) species presented in the Galápagos Islands. Hidrobiológica 26 (2): 151-159. ABSTRACT Background. The Galápagos Islands have been the subject of numerous scientific expeditions. The chief source of in- formation on their marine algae is the report published in 1945 by the late William Randolph Taylor on collections made by the Allan Hancock Pacific Expedition of 1934. Prior to this work, there were no published records ofCodium from the Galápagos. Taylor recorder six species of Codium of which C. isabelae and C. santamariae were new descriptions. Goals. On the basis of collections made since 1939, we have reviewed the registry of Codium in these islands. Methods. Com- parative analysis based on morphology and utricle anatomy. Results. Codium isabelae and C. santamariae are combined under the former name. Records of C. cervicorne and C. dichotomum also are referred to C. isabelae, those of C. setchellii are based partly on representatives of C. picturatum, a recently described species from the Mexican Pacific, Panama, Colombia, and Hawaii, and partly on representatives of a species similar if not identical to C. -
Contributions to the Molecular Biology of Kelp
CONTRIBUTIONS TO THE MOLECULAR BIOLOGY OF KELP Michael Keith Liptack B.Sc.. University of Washington, 199 1 THESIS SUBMlTTED Di PARTIAL FULFILLMENT OF THE REQUREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in the Department of Biological Sciences O Michae! K. Liptack 1999 SMON FRASER UNIVERSITY Novembcr 1999 All rights reserved. This work rnay not be reproduced in whole or in put, by photocopy or other means. without permission of the author. National Library Biblioth ue nationale ofCamda du Cana7 a Acquisitions and Acquisitions et Bibliogmphic SeMces seMces bibliographiques The author bas granted a non- L'auteur a accordé une licence non exclusive licence allowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sel1 reproduire, prêter, distribuer ou copies of this thesis in microfotm, vendre des copies de cette thèse sous paper or electronic formats. la fome de microfiche/film, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in ths thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fiom it Ni la thèse ni des extraits substantiels may be printed or othexwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. ABSTRACT Genetic relatedness between various kelp (Order Laminariales, Class Phaeophyceae, Division Heterokontophyta) taxa was investigated using DNA sequencirig and PCR-typing. The rDNA ITS 1 region of gametophytes generated by a nanvally occurring apparent kelp hybrid of Macrocystis C. -
"Phycology". In: Encyclopedia of Life Science
Phycology Introductory article Ralph A Lewin, University of California, La Jolla, California, USA Article Contents Michael A Borowitzka, Murdoch University, Perth, Australia . General Features . Uses The study of algae is generally called ‘phycology’, from the Greek word phykos meaning . Noxious Algae ‘seaweed’. Just what algae are is difficult to define, because they belong to many different . Classification and unrelated classes including both prokaryotic and eukaryotic representatives. Broadly . Evolution speaking, the algae comprise all, mainly aquatic, plants that can use light energy to fix carbon from atmospheric CO2 and evolve oxygen, but which are not specialized land doi: 10.1038/npg.els.0004234 plants like mosses, ferns, coniferous trees and flowering plants. This is a negative definition, but it serves its purpose. General Features Algae range in size from microscopic unicells less than 1 mm several species are also of economic importance. Some in diameter to kelps as long as 60 m. They can be found in kinds are consumed as food by humans. These include almost all aqueous or moist habitats; in marine and fresh- the red alga Porphyra (also known as nori or laver), an water environments they are the main photosynthetic or- important ingredient of Japanese foods such as sushi. ganisms. They are also common in soils, salt lakes and hot Other algae commonly eaten in the Orient are the brown springs, and some can grow in snow and on rocks and the algae Laminaria and Undaria and the green algae Caulerpa bark of trees. Most algae normally require light, but some and Monostroma. The new science of molecular biology species can also grow in the dark if a suitable organic carbon has depended largely on the use of algal polysaccharides, source is available for nutrition. -
Seaweed and Seagrasses Inventory of Laguna De San Ignacio, BCS
UNIVERSIDAD AUTÓNOMA DE BAJA CALIFORNIA SUR ÁREA DE CONOCIMIENTO DE CIENCIAS DEL MAR DEPARTAMENTO ACADÉMICO DE BIOLOGÍA MARINA PROGRAMA DE INVESTIGACIÓN EN BOTÁNICA MARINA Seaweed and seagrasses inventory of Laguna de San Ignacio, BCS. Dr. Rafael Riosmena-Rodríguez y Dr. Juan Manuel López Vivas Programa de Investigación en Botánica Marina, Departamento de Biología Marina, Universidad Autónoma de Baja California Sur, Apartado postal 19-B, km. 5.5 carretera al Sur, La Paz B.C.S. 23080 México. Tel. 52-612-1238800 ext. 4140; Fax. 52-612-12800880; Email: [email protected]. Participants: Dr. Jorge Manuel López-Calderón, Dr. Carlos Sánchez Ortiz, Dr. Gerardo González Barba, Dr. Sung Min Boo, Dra. Kyung Min Lee, Hidrobiol. Carmen Mendez Trejo, M. en C. Nestor Manuel Ruíz Robinson, Pas Biol. Mar. Tania Cota. Periodo de reporte: Marzo del 2013 a Junio del 2014. Abstract: The present report presents the surveys of marine flora 2013 – 2014 in the San Ignacio Lagoon of the, representing the 50% of planned visits and in where we were able to identifying 19 species of macroalgae to the area plus 2 Seagrass traditionally cited. The analysis of the number of species / distribution of macroalgae and seagrass is in progress using an intense review of literature who will be concluded using the last field trip information in May-June 2014. During the last two years we have not been able to find large abundances of species of microalgae as were described since 2006 and the floristic lists developed in the 90's. This added with the presence to increase both coverage and biomass of invasive species which makes a real threat to consider. -
Aquatic Invasive Species in Massachusetts
Aquatic Invasive Species in Massachusetts What They Are, How They Get Here, and What We Are Doing to Keep Them Out. Jay Baker Massachusetts Office of Coastal Zone Management 9/29/2005 presented by Jay Baker at a MIS monitoring training session. Massachusetts has been working to develop a Aquatic Invasive Species Management Plan One of the goals of the Management Plan is to start monitoring networks. Thought it might be useful to share with you the approach we’ve taken in developing this comprehensive plan, highlight a few key problems we faced along the way, and give you some sense of the time frame we’ve been working on Should note: While the plan covers marine and freshwater invaders, the focus here is primarily on the marine components 1 Codium fragile ssp. Tomentosoides or green fleece, dead man’s fingers An introduced species from the Pacific Ocean around Japan is causing some major problems in Massachusetts. 2 Particularly in West Harwich on Cape Cod. Tons of codium is washing up on the beaches, Sitting there, rotting and wrecking the beach experience. Codium washes up making the beach unusable. The Town of West Harwich came to CZM (Coastal Zone Management) asking for suggestions to solve this problem. 3 The best idea so far has been to turn the codium into a Dune Restoration Project. Bulldozers mix the sand, slipper shells with the codium and pile it into dunes. The codium needs to attach to something hard. Off the West Harwich shore, the codium often attaches to common slipper shells (Crepidula fornicata ) which is found to be prolific in eutrophic waters. -
First Record of Genuine Codium Mamillosum Harvey (Codiaceae, Ulvophyceae) from Japan
Bull. Natl. Mus. Nat. Sci., Ser. B, 43(4), pp. 93–98, November 22, 2017 First record of genuine Codium mamillosum Harvey (Codiaceae, Ulvophyceae) from Japan Taiju Kitayama Department of Botany, National Museum of Nature and Science, Amakubo 4–1–1, Tsukuba, Ibaraki 305–0005, Japan E-mail: [email protected] (Received 29 August 2017; accepted 27 September 2017) Abstract A marine benthic green alga, Codium mamillosum Harvey (Codiaceae, Bryopsidales, Ulvophyceae) was collected from the mesophotic zone off Chichi-jima Island, Ogasawara Islands, Japan. In Japan, at the end of the 19th century, this species name was used by Okamura (in Matsumura and Miyoshi, 1899) for his specimens of solid globular Codium collected from main islands of Japan, afterward it was synonymized by Silva (1962) into Codium minus (O.C. Schmidt) P.C.Silva as “Codium mamillosum sensu Okamura”. The present alga collected recently from Oga- sawara Islands was identified as a genuine C. mamillosum because the thalli have relatively larger utricles (550–1100 µm in diameter) than those of C. minus. Key words : Codiaceae, Codium mamillosum, Japan, marine benthic green alga, Ogasawara Islands, Ulvophyceae. In the end of the 18th century, the marine Harvey (1855) based on the specimens collected green algal genus Codium (Codiaceae, Bryopsi- from Western Australia, whose appearance was dales, Ulvophyceae) was established by Stack- described as “a very solid, green, mamillated house (1795). This genus has 120–144 species (having nipples) ball”. In Japan, Okamura in (Huisman, 2015; Guiry and Guiry, 2017), which Matsumura and Miyoshi (1899) and Okamura are extremely various in external morphology: (1915) identified the specimens of solid globular flattened to erect, dorsiventral or isobilateral, Codium collected from main islands of Japan as branched or unbranched, complanate to terete, C. -
Codium Spongiosum 50.620 Harvey Foliose MICRO Techniques Needed and Plant Shape PLANT
Codium spongiosum 50.620 Harvey foliose MICRO Techniques needed and plant shape PLANT Classification Phylum: Chlorophyta; Order: Bryopsidales; Family: Codiaceae *Descriptive name wavy green cushion Features plant yellow green, a flat cushion on rock, at first rubbery later spongy, about 200mm across, and 15mm thick, surface wavy, edges lobed Special requirements shave off or tease out a few of the microscopic, flask-shaped outer structures (utricles) and view them under the microscope. Utricles club-shaped, 2-6mm long and 400-520m in diameter, smaller ones arising directly from the middle part of larger ones with a basal, internal plug Occurrences central W Australia to Victoria and in Queensland. In the adjacent Indian, S Atlantic and Pacific Oceans Usual Habitat on rock in shallow calm waters Similar Species Codium lucasii, but that species more tightly adheres to rock. Microscopic investigation of the utricles is needed to separate the species. Description in the Benthic Flora Part I, pages 228-230 Details of Anatomy pl pl Preserved specimens of Codium spongiosum (A19383) viewed microscopically at different magnifications 1. club-shaped utricles with a few detached filaments from a shaving of the plant surface 2. detail of the bases of two utricles showing how they connect with the middle part of a larger utricle. Prominent plugs (pl ) occur at their junctions None exist in filaments (not shown) * Descriptive names are inventions to aid identification, and are not commonly used “Algae Revealed” R N Baldock, S Australian State Herbarium, July 2003 Codium spongiosum Harvey, (A13751b), from Coffin Bay, S. Australia * Descriptive names are inventions to aid identification, and are not commonly used “Algae Revealed” R N Baldock, S Australian State Herbarium, July 2003 .