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Nanohub Environments Available Aug 12, 2018 Environment Notes abinit-5.4.4: ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave basis. abinit-6.12.3: ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave basis. adms-2.3.1: ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. adms-2.3.4: ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. anaconda-1.9.2: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda-2.0.1: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda-2.1.0: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda-2.3.0: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda2-4.1: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda2-4.4: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda-2.5.0: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda2-5.1: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda2-dev: Anaconda is a package manager, an environment manager, a Python distribution, and a collection of over 1,000+ open source packages. anaconda3-4.1: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda3-4.4: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda3-5.1: Python distribution for large-scale data processing, predictive analytics, and scientific computing. anaconda3-dev: Anaconda is a package manager, an environment manager, a Python distribution, and a collection of over 1,000+ open source packages. armadillo-6.200.4: Armadillo is a high quality C++ linear algebra library, aiming towards a good balance between speed and ease of use. arpack-mpich2-1.3-gnu-4.7.2: ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. arpack-mpich2-1.3-intel-14.0.0: ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. aster-10.3.0.3: Analysis of Structures and Thermodynamics for Studies & Research aster-13.4.0.3: Analysis of Structures and Thermodynamics for Studies & Research atomsk-b0.8.7: The Swiss-army knife of atomic simulations avogadro-1.1.0: Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture. berkeleygw-1178: Quasiparticle and Optical Excitations berkeleygw-395: Quasiparticle and Optical Excitations binvox-1.21: binvox is a straight-forward program that reads a 3D model file, rasterizes it into a binary 3D voxel grid, and writes the resulting voxel file. binvox is not supported by nanoHUB, contact the authors directly with any questions or problems biopython-1.55: Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists. bison-2.6.5: Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. As an experimental feature, Bison can also generate IELR(1) or canonical LR(1) parser tables. Once you are proficient with Bison, you can use it to develop a wide range of language parsers, from those used in simple desk calculators to complex programming languages. blender-2.70a: Blender is a free and open source 3D animation suite. It supports the entirety of the 3D pipeline--modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. blitz-0.9-intel-14.0.0: Blitz provides an n-dimensional array class for C++ with integral, floating, complex, and well-behaved, user- defined types. boost-1.43-gnu-4.7.2: C++ libraries boost-1.54.0: Boost 1.54.0 boost-1.62.0: Boost 1.62.0 boost-1.62.0-mpich2-1.3-gnu-4.7.2: C++ libraries boost-1.62.0-openmpi-1.6.3-gnu-4.7.2: C++ libraries cadnano2-20170106: cadnano simplifies and enhances the process of designing three-dimensional DNA origami nanostructures. cadnano2-2.2.0: cadnano simplifies and enhances the process of designing three-dimensional DNA origami nanostructures. calculix-2.6: Three-Dimensional Structural Finite Element Program Environment Notes cgal-4.4: The Computational Geometry Algorithms Library (CGAL), offers data structures and algorithms like triangulations (2D constrained triangulations, and Delaunay triangulations and periodic triangulations in 2D and 3D), Voronoi diagrams (for 2D and 3D points, 2D additively weighted Voronoi diagrams, and segment Voronoi diagrams), polygons (Boolean operations, offsets, straight skeleton), polyhedra (Boolean operations), arrangements of curves and their applications (2D and 3D envelopes, Minkowski sums), mesh generation (2D Delaunay mesh generation and 3D surface and volume mesh generation, skin surfaces), geometry processing (surface mesh simplification, subdivision and parameterization, as well as estimation of local differential properties, and approximation of ridges and umbilics), alpha shapes, convex hull algorithms (in 2D, 3D and dD), search structures (kd trees for nearest neighbor search, and range and segment trees), interpolation (natural neighbor interpolation and placement of streamlines), shape analysis, fitting, and distances (smallest enclosing sphere of points or spheres, smallest enclosing ellipsoid of points, principal component analysis), and kinetic data structures. cimg-1.6.7: The CImg Library is a small, open-source, and modern C++ toolkit for image processing. citrination-client-2.0.0: implementation of the Citrination API cmake-2.8.11.2: CMAKE 2.8.11.2 cmake-2.8.12: the cross-platform, open-source build system cmake-3.6.3: the cross-platform, open-source build system cython-0.25: The Cython compiler for writing C extensions for the Python language. ddscat-7.3.0_130527: Discrete Dipole Approximation Scattering (DDSCAT) code dill-0.2.5: serialize all of python (almost) eigen-2.0.16: C++ Matrix template system eigen-3.2.10: C++ Matrix template system emacs: Invoke the emacs editor by default. enum34-1.1.6: An enumeration is a set of symbolic names (members) bound to unique, constant values. Within an enumeration, the members can be compared by identity, and the enumeration itself can be iterated over. espresso-4.1.1: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-4.2: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-4.3.2-xas: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-4.3-xas: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-5.1.2: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-6.1: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). espresso-6.2.1: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory,
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