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Evolutionary Dynamics of Bird Populations in Southeast Asia Haw Chuan Lim Louisiana State University and Agricultural and Mechanical College, Haw Chuan [email protected]
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2010 Evolutionary dynamics of bird populations in Southeast Asia Haw Chuan Lim Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Lim, Haw Chuan, "Evolutionary dynamics of bird populations in Southeast Asia" (2010). LSU Doctoral Dissertations. 1372. https://digitalcommons.lsu.edu/gradschool_dissertations/1372 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. EVOLUTIONARY DYNAMICS OF BIRD POPULATIONS IN SOUTHEAST ASIA A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences Haw Chuan Lim B. Env.Sc., University of Wollongong, Australia, 1996 M.S., National University of Singapore, Singapore, 2002 August 2010 Acknowledgments I am very thankful to Dr. Frederick Sheldon, my advisor, for agreeing to take me as a graduate student. Up to that point, I only had experience as an avian ecologist. The members of my graduate committee, Drs. Robb Brumfield, Bryan Carstens, Phil Stouffer, and Fred, are prominent experts in their fields, and they have been very generous in the giving their time and providing advice. I also benefited greatly from interactions with other staff and faculty members of the Museum of Natural Science and the Department of Biological Sciences. -
Avian Vision and the Evolution of Egg Color Mimicry in The
evo_65_7_cover 6/22/11 7:16 PM Page 1 Volume 65, Number 7, July 2011 VOLUME 65, NUMBER 7, JULY 2011 EVOLUTION VOLUME 65, NUMBER 7, PAGES PERSPECTIVE INTERNATIONAL JOURNAL OF ORGANIC EVOLUTION Convergence, Adaptation, and Constraint Jonathan B. Losos 1827–1840 ORIGINAL ARTICLES 1827 Neutral Biodiversity Theory can Explain the Imbalance of Phylogenetic Trees but not the Tempo –2132 of their Diversification T. Jonathan Davies, Andrew P. Allen, Luís Borda-de-A´gua, Jim Regetz, and Carlos J. Melián 1841–1850 The Impact of Gene-Tree/Species-Tree Discordance on Diversification-Rate Estimation Frank T. Burbrink and R. Alexander Pyron 1851–1861 Dealing with Incomplete Taxon Sampling and Diversification of a Large Clade of Mushroom-Forming Fungi Martin Ryberg and Patrick Brandon Matheny 1862–1878 EVOLUTION Diversity and Demography in Beringia: Multilocus Tests of Paleodistribution Models Reveal the Complex History of Arctic Ground Squirrels Kurt E. Galbreath, Joseph A. Cook, Aren A. Eddingsaas, and Eric G. DeChaine 1879–1896 The Genetic Architecture of Adaptation Under Migration-Selection Balance Sam Yeaman and Michael C. Whitlock 1897–1911 The Influence of an Innovative Locomotor Strategy on the Phenotypic Diversification of Triggerfish (Family: Balistidae) Alex Dornburg, Brian Sidlauskas, Francesco Santini, Laurie Sorenson, Thomas J. Near, and Michael E. Alfaro 1912–1926 The Tempo and Mode of Evolution: Body Sizes of Island Mammals Pasquale Raia and Shai Meiri 1927–1934 Mammals Evolve Faster on Smaller Islands Virginie Millien 1935–1944 Evolutionary Advantage of Small Populations on Complex Fitness Landscapes Kavita Jain, Joachim Krug, and Su-Chan Park 1945–1955 Interspecific X-Chromosome and Mitochondrial DNA Introgression in the Iberian Hare: Selection or Allele Surfing? July 2011 José Melo-Ferreira, Paulo C. -
Telomere Length Is Repeatable, Shortens with Age and Reproductive
University of Groningen Telomere length is repeatable, shortens with age and reproductive success, and predicts remaining lifespan in a long-lived seabird Bichet, Coraline; Bouwhuis, Sandra; Bauch, Christina; Verhulst, Simon; Becker, Peter H.; Vedder, Oscar Published in: Molecular Ecology DOI: 10.1111/mec.15331 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Bichet, C., Bouwhuis, S., Bauch, C., Verhulst, S., Becker, P. H., & Vedder, O. (2020). Telomere length is repeatable, shortens with age and reproductive success, and predicts remaining lifespan in a long-lived seabird. Molecular Ecology, 29(2), 429-441. https://doi.org/10.1111/mec.15331 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Population Substructure, Local Density, and Calf Winter Survival in Red Deer (Cervus Elaphus)
Edinburgh Research Explorer Population substructure, local density, and calf winter survival in red deer (Cervus elaphus) Citation for published version: Coulson, T, Albon, S, Guinness, F, Pemberton, J & CluttonBrock, T 1997, 'Population substructure, local density, and calf winter survival in red deer (Cervus elaphus)', Ecology, vol. 78, no. 3, pp. 852-863. https://doi.org/10.1890/0012-9658(1997)078[0852:PSLDAC]2.0.CO;2 Digital Object Identifier (DOI): 10.1890/0012-9658(1997)078[0852:PSLDAC]2.0.CO;2 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Ecology Publisher Rights Statement: RoMEO green General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 07. Oct. 2021 Population Substructure, Local Density, and Calf Winter Survival in Red Deer (Cervus Elaphus) Author(s): Tim Coulson, Steve Albon, Fiona Guinness, Josephine Pemberton and Tim Clutton- Brock Source: Ecology, Vol. 78, No. 3 (Apr., 1997), pp. 852-863 Published by: Ecological Society of America Stable URL: http://www.jstor.org/stable/2266064 . -
Science & Policy Meeting Jennifer Lippincott-Schwartz Science in The
SUMMER 2014 ISSUE 27 encounters page 9 Science in the desert EMBO | EMBL Anniversary Science & Policy Meeting pageS 2 – 3 ANNIVERSARY TH page 8 Interview Jennifer E M B O 50 Lippincott-Schwartz H ©NI Membership expansion EMBO News New funding for senior postdoctoral In perspective Georgina Ferry’s enlarges its membership into evolution, researchers. EMBO Advanced Fellowships book tells the story of the growth and ecology and neurosciences on the offer an additional two years of financial expansion of EMBO since 1964. occasion of its 50th anniversary. support to former and current EMBO Fellows. PAGES 4 – 6 PAGE 11 PAGES 16 www.embo.org HIGHLIGHTS FROM THE EMBO|EMBL ANNIVERSARY SCIENCE AND POLICY MEETING transmissible cancer: the Tasmanian devil facial Science meets policy and politics tumour disease and the canine transmissible venereal tumour. After a ceremony to unveil the 2014 marks the 50th anniversary of EMBO, the 45th anniversary of the ScienceTree (see box), an oak tree planted in soil European Molecular Biology Conference (EMBC), the organization of obtained from countries throughout the European member states who fund EMBO, and the 40th anniversary of the European Union to symbolize the importance of European integration, representatives from the govern- Molecular Biology Laboratory (EMBL). EMBO, EMBC, and EMBL recently ments of France, Luxembourg, Malta, Spain combined their efforts to put together a joint event at the EMBL Advanced and Switzerland took part in a panel discussion Training Centre in Heidelberg, Germany, on 2 and 3 July 2014. The moderated by Marja Makarow, Vice President for Research of the Academy of Finland. -
Resource Summer 2017
ISSUE 55 Summer 2017 resourc e The Newsletter of Scotland’s National Academy Image © Gary Doak Photography Our Patron, Her Majesty The Queen, visited the RSE in July to present the 2017 Royal Medals. Her Majesty is pictured with past and present recipients of RSE Royal Medals. (Details inside) Also featured in this issue: Wilfred Owen’s Edinburgh 1917 –2017 International Relations with Japan New CEO at the RSE resourc e Summer 2017 The Royal Visit 2017 We were highly honoured to welcome Her Majesty The Queen to the RSE on Friday 7 July 2017 to present this year’s Royal Medals. Her Majesty was greeted, at the door to 22 George Street, by The Rt Hon Lord Provost and Lord Lieutenant of the City of Edinburgh, Frank Ross. The RSE Royal Medals were instituted by Her Majesty in 2000, to mark the Millennium, and have been awarded since then with her express approval. These accolades are awarded for distinction and international repute in any of the following categories: Life Sciences; Physical and Engineering Sciences; Arts, Humanities and Social Sciences; Business and Commerce. Medals were awarded to: Professor Peter Boyle CorrFRSE FMEDSci (below left), President, International Prevention Research Institute and Director, the University of Strathclyde Institute of Global Public Health, for his outstanding contribution to global cancer control and public health policy; Professor Tessa Holyoake FRSE FMedSci, Director (below right), Paul O’Gorman Leukaemia Research Centre, University of Glasgow, for her outstanding contribution to the field of Life Sciences through her discovery of the existence of cancer stem cells in chronic myeloid leukaemia and her development of a new therapy for this condition; Mr Donald Runnicles OBE (above), Chief Conductor, BBC Scottish Symphony Orchestra, for his outstanding contribution to the art of music at the highest international level. -
General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models
| INVESTIGATION General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models Pierre de Villemereuil,* Holger Schielzeth,†,‡ Shinichi Nakagawa,§ and Michael Morrissey**,1 *Laboratoire d’Écologie Alpine, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5553, Université Joseph Fourier, 38041 Grenoble Cedex 9, France, †Department of Evolutionary Biology, Bielefeld University, 33615 Bielefeld, Germany, ‡Institute of Ecology, Friedrich Schiller University, 07743 Jena, Germany, §Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales 2052, Australia, and **School of Evolutionary Biology, University of St. Andrews, St. Andrews KY16 9TH, United Kingdom ORCID IDs: 0000-0002-8791-6104 (P.d.V.); 0000-0002-9124-2261 (H.S.); 0000-0002-7765-5182 (S.N.); 0000-0001-6209-0177 (M.M.) ABSTRACT Methods for inference and interpretation of evolutionary quantitative genetic parameters, and for prediction of the response to selection, are best developed for traits with normal distributions. Many traits of evolutionary interest, including many life history and behavioral traits, have inherently nonnormal distributions. The generalized linear mixed model (GLMM) framework has become a widely used tool for estimating quantitative genetic parameters for nonnormal traits. However, whereas GLMMs provide inference on a statistically convenient latent scale, it is often desirable to express quantitative genetic parameters on the scale upon which traits are measured. The parameters of fitted GLMMs, despite being on a latent scale, fully determine all quantities of potential interest on the scale on which traits are expressed. We provide expressions for deriving each of such quantities, including population means, phenotypic (co)variances, variance components including additive genetic (co)variances, and parameters such as heritability. -
Survival, Natural Selection and Foraging Efficiency in Soay Sheep on St
Survival, Natural Selection and Foraging Efficiency in Soay Sheep on St. Kilda. JOCELYN MARGERY MILNER Submitted for the degree of Doctor of Philosophy of the University of London, January 1999. Institute of Zoology, The Zoological Society of London, Regent’s Park, London, NWl 4RY. & Department of Biology, University College London, Gower Street, London, WCIE 6BT. ProQuest Number: 10015690 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10015690 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 Survival, Natural Selection and Foraging Efficiency in Soay Sheep on St. Kilda. 4 Soay sheep grazing in the Village Bay study area on Hirta, St. Kilda, in March. Acknowledgements After the disappointment of having to abandon ‘PhD-take one’ due to civil war in Rwanda, in 1993/94, completing this thesis means a lot to me. I am therefore very grateful to all those who have given me a second chance, and helped me to achieve this personal goal. In particular, I would like to thank my small army of supervisors. They have been supportive and involved throughout, teaching me how to approach research and helping me focus on interesting ecological questions. -
Museum Quarterly Newsletter May 2014
Museum Quarterly LSU Museum of Natural Science May 2014 Volume 32, Issue 2 Letter from the Director... Museum of After a cold and long winter, Spring is finally back in Natural Science Baton Rouge, with the first waves of Neotropical migrants Director and moving through. I was treated this past weekend to a male Curators Cerulean Warbler singing and foraging in my back yard. During my days as a nest searcher for Dr. Scott Robinson (Univ. Florida) in Illinois, I found several nests of this Robb T. Brumfeld Director, Roy Paul Daniels exquisite species high up in the forest canopy. It’s one of Professor and Curator of my favorite birds. Genetic Resources We have had an abundance of good news around the Frederick H. Sheldon Museum of late. Two of our doctoral students (Cathy George H. Newman from the Austin lab and Glenn Seeholzer from my lab) landed prestigious Lowery, Jr., Professor and Curator of Genetic Doctoral Dissertation Improvement Grants from the National Science Foundation. Resources In addition, doctoral student Eric Rittmeyer (Austin) received an NSF postdoctoral fellowship to work on herps in Australia. Congrats to all! Christopher C. Austin Curator of We were also very pleased to learn that LSU alum Dr. Jason Weckstein (PhD 2003, Herpetology Sheldon lab) has accepted a position as Curator of Birds and Assistant Professor of Biology at the Academy of Natural Sciences of Drexel University. The Academy Prosanta Chakrabarty Curator of Fishes of Natural Sciences is one of the oldest and most important collections in North America, but has been without a curator for several years now. -
Reinforcement and the Genetics of Hybrid Incompatibilities
Genetics: Published Articles Ahead of Print, published on March 17, 2006 as 10.1534/genetics.105.048199 Reinforcement and the genetics of hybrid incompatibilities Alan R. Lemmon1 and Mark Kirkpatrick Affiliation: Section of Integrative Biology, The University of Texas at Austin, Austin, TX 78712 1 Running head: Reinforcement and hybrid incompatibility Keywords: hybridization, speciation, reinforcement, incompatibility, sex linkage, incompatibility sieve 1Correspondence: Alan R. Lemmon Section of Integrative Biology The University of Texas at Austin 1 University Station #C0930 Austin, TX 78712 USA Email: [email protected] Tel: 512-471-3760; Fax: 512-471-3878 2 ABSTRACT Recent empirical studies suggest that genes involved in speciation are often sex-linked. We derive a general analytic model of reinforcement to study the effects of sex linkage on reinforcement under three forms of selection against hybrids: one-locus, two-locus, and ecological incompatibilities. We show that the pattern of sex linkage can have a large effect on the amount of reinforcement due to hybrid incompatibility. Sex linkage of genes involved in postzygotic isolation generally increases the strength of reinforcement, but only if genes involved in prezygotic isolation are also sex-linked. We use exact simulations to test the accuracy of the approximation and find that qualitative predictions made assuming weak selection can hold when selection is strong. 3 Speciation is the evolution of prezygotic or postzygotic isolation. Postzygotic isolation is thought to evolve through the accumulation of genetic incompatibilities during allopatric separation. Prezygotic isolation can evolve through reinforcement, which is the evolution of increased prezygotic isolation as a result of selection against hybrids (Dobzhansky 1940; Blair 1955; Howard 1993). -
Sex Differences in the Recombination Landscape*
vol. 195, no. 2 the american naturalist february 2020 Symposium Sex Differences in the Recombination Landscape* Jason M. Sardell† and Mark Kirkpatrick Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712 Submitted May 12, 2018; Accepted April 26, 2019; Electronically published December 9, 2019 Online enhancement: appendix. abstract: Sex differences in overall recombination rates are well Nearly all attention to this question has focused on over- known, but little theoretical or empirical attention has been given all map lengths. Achiasmy, in which recombination is lost to how and why sexes differ in their recombination landscapes: the in one sex, has evolved about 30 times, and the loss always patterns of recombination along chromosomes. In the first scientific occurs in the heterogametic sex (Haldane 1922; Huxley review of this phenomenon, we find that recombination is biased to- 1928; Burt et al. 1991). A much more common but less un- ward telomeres in males and more uniformly distributed in females in derstood situation is heterochiasmy, in which both sexes re- most vertebrates and many other eukaryotes. Notable exceptions to combine but at different rates. In these cases, sex differences this pattern exist, however. Fine-scale recombination patterns also fre- quently differ between males and females. The molecular mechanisms in map lengths are not correlated with which sex is hetero- responsible for sex differences remain unclear, but chromatin land- gametic (Burt et al. 1991; Lenormand 2003; Brandvain and scapes play a role. Why these sex differences evolve also is unclear. Hy- Coop 2012), although overall recombination tends to be potheses suggest that they may result from sexually antagonistic selec- higher in females across animals and outcrossing plants (re- tion acting on coding genes and their regulatory elements, meiotic viewed in Lenormand and Dutheil 2005; Brandvain and drive in females, selection during the haploid phase of the life cycle, Coop 2012). -
The Evolution of Sexual Imprinting Through Reinforcement
Assortative mating by an obliquely transmitted local cultural trait promotes divergence Justin Yeh University of North Carolina at Chapel Hill Do learned birdsong dialects lead to speciation? • Molecular similarity might correlate with dialect similarity (Baker 1975; Baker & Thompson 1982; Zink & Barrowclough 1984) • Genetic cline overlap with cultural cline, but at lower steepness, and the birdsong does not predict genotype (Kenyon et al. 2016) • Bird lineage with song learning has more species than that without (Lachlan & Servedio 2004) Justin Yeh 2 correlation ⇏ causation no correlation ⇏ no causation Justin Yeh 3 Oblique learning: from unrelated individual of the previous generation • Juvenile songbirds learn from adult neighbors • Obliquely transmitted traits are immune to sexual selection (Yeh & Servedio 2015) • If any juvenile can learn from any adult, there should not be correlation between gene and culture Justin Yeh 4 Spatial structure creates gene- culture association • Learning is spatially restricted • Cultural traits can be locally adapted – High-freq vocal signals in cities (Luther & Derryberry 2012) – Tonal languages in humid environment (Everett et al. 2014) Justin Yeh 5 Hypothesis Local genes & Local song & local local oblique reproduction learning Justin Yeh 6 Hypothesis Local genes & Local song & local local oblique reproduction learning Gene-culture association Justin Yeh 7 Hypothesis Local genes & Local song & local local oblique reproduction learning Divergent selection Gene-culture & sexual selection association