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BioPAX
Kinetic Modeling Using Biopax Ontology
The Biopax Community Standard for Pathway Data Sharing
Modeling Without Borders: Creating and Annotating Vcell Models Using the Web
Modeling Using Biopax Standard
Integrating Biopax Knowledge with SBML Models
Biological Pathways Exchange Language Level 3, Release Version 1 Documentation
Modelbricks—Modules for Reproducible Modeling Improving Model Annotation and Provenance
Biological Pathways Exchange Language Level 1, Version 1.4 Documentation
Computational Modeling in Biology Network (COMBINE)
Interoperable Standards for Modelling in Biology
SBPAX: Turning Bio Knowledge Into Math Models, Automated
Interconversion Between SBML and Biopax
SABIO-RK: an Updated Resource for Manually Curated Biochemical Reaction Kinetics Ulrike Wittig1,*,Majarey1, Andreas Weidemann1, Renate Kania2 and Wolfgang Muller¨ 1
A Brief History of Combine
The Biopax Community Standard for Pathway Data Sharing
Specifications of Standards in Systems and Synthetic Biology
Path2models: Large-Scale Generation of Computational Models from Biochemical Pathway Maps
Challenges for Modeling and Simulation Methods in Systems Biology
Top View
Media: Uwgroup13mar09.Pdf
Biopax - Biological Pathway Data Exchange Format Tutorial
Towards a Web-Based Simulation Experiment Description Repository
Biopax: Biological Pathway Exchange a Community Standard for Representing Pathways
SBML to Biopax
Representing, Storing and Accessing Molecular Interaction Data: a Review of Models and Tools
Biouml – Open Source Integrated Platform for Collaborative and Reproducible Research in Systems Biology
Slides COMBINE
Biological Pathways Exchange Language – Level 1, Version 1
Integrating Biopax Pathway Knowledge with SBML Models O
A Framework for Automatically Generating Executable Pathway Models Specified in Biopax Reza Haydarlou1, Annika Jacobsen1, Nicola Bonzanni1,2, K
Context-Sensitive Creation of Kinetic Equations in Biochemical Networks
216139091.Pdf