Acta Oceanologica Sinica Vol. 33 (2014) contents I Vol. 33 (2014) contents Number 1 Page 1 ············· Review and suggestions for estimating particulate organic carbon and dissolved organic carbon inventories in the ocean using remote sensing data PAN Delu, LIU Qiong, BAI Yan 11············ Interbasin exchanges and their roles in global ocean circulation: A study based on 1 400 years’ spin up of MOM4p1 ZHU Yaohua, WEI zexun, FANG Guohong, WANG Yonggang, GUAN Yuping 24············ Effects of Stokes production on summer ocean shelf dynamics ZHANG Xuefeng, HANGuijun, WANG Xidong, ZHANG Lianxin 35············ A numerical study on the impact of tidal waves on the storm surge in the north of Liaodong Bay KONG Xiangpeng 42············ Estimation of eddy heat transport in the global ocean from Argo data ZHANG Zhiwei, ZHONG Yisen, TIAN Jiwei, YANG Qingxuan, ZHAO Wei 48············ An analysis on the error structure and mechanism of soil moisture and ocean salinity remotely sensed sea surface salinity products CHEN Jian, ZHANG Ren, WANG Huizan, AN Yuzhu, WANG Luhua, WANG Gongjie 56············ A modified discrete element model for sea ice dynamics LI Baohui, LI Hai, LIU Yu, WANG Anliang, JI Shunying 64············ How does the Indian Ocean subtropical dipole trigger the tropical Indian Ocean dipole via the Mascarene high? FENG Junqiao, HU Dunxin, YU Lejiang 77············ Effect of nonlinear advection on the Indian Ocean diploe asymmetry WANG Yu, LAN Jian, CUI Fengjuan 83············ Using a mesoscale ensemble to predict forecast error and perform targeted observation DU Jun, YU Rucong, CUI Chunguang, LI Jun 92············ An assessment of global ocean wave energy resources over the last 45 a ZHENG Chongwei, SHAO Longtan, SHI Wenli, SU Qin, LIN Gang, LI Xunqiang, CHEN Xiaobin 102············ Polarimetric entropy of the ocean surface with a two-scale scattering model WANG Wenguang, LI Haiyan, SONG Xingai 109············ Assessment of the initial sea surface temperature product of the scanning microwave radiometer aboard on HY-2 satellite ZHAO Yili, ZHU Jianhua, LIN Mingsen, CHEN Chuntao, HUANG Xiaoqi, WANG He, ZHANG Youguang, PENG Hailong 114············ A preliminary assessment of the sea surface wind speed production of HY-2 scanning microwave radiometer HUANG Xiaoqi, ZHU Jianhua, LIN Mingsen, ZHAO Yili, WANG He, CHEN Chuntao, PENG Hailong, ZHANG Youguang 120············ Priori knowledge based a bathymetry assessment method using the sun glitter imagery: a case study of sand waves on the Taiwan Banks SHAOHao,LIYan,LILi 127············ Intercomparison of GPS radiosonde soundings during the eastern tropical Indian Ocean experiment XIE Qiang, HUANG Ke, WANG Dongxiao, YANG Lei, CHEN Ju, WU Zewen, LI Daning, LIANG Zhiyan 135············ Interaction between Chlorella vulgaris and bacteria: interference and resource competition QU Liang, WANG Renjun, ZHAO Peng, CHEN Ruinan, ZHOU Wenli, TANG Liuqing, TANG Xuexi Number 2 Page 1 Transcriptome sequencing of essential marine brown and red algal species in China and its significance in algal biology and phylogeny WU Shuangxiu, SUN Jing, CHI Shan, WANG Liang, WANG Xumin, LIU Cui, LI Xingang, YIN Jinlong, LIU Tao, YU Jun 13 Transcriptome-wide evolutionary analysis on essential brown algae (Phaeophyceae) in China SUN Jing, WANG Liang, WU Shuangxiu, WANG Xumin, XIAO Jingfa, CHI Shan, LIU Cui, REN Lufeng, ZHAO Yuhui, LIU Tao, YU Jun 20 Transcriptome characterization of Ishige okamurae (Phaeophyceae) shows strong environmental acclimation QU Jieqiong, WANG Xumin, CHI Shan, WU Shuangxiu, SUN Jing, LIU Cui, CHEN Shengping, YU Jun, LIU Tao 27 Analysis of Saccharina japonica transcriptome using the high-throughput DNA sequencing technique and its vanadium-dependent haloperoxidase gene LIANG Xiayuan, WANG Xumin, CHI Shan, WU Shuangxiu, SUN Jing, LIU Cui, CHEN Shengping, YU Jun, LIU Tao 37 Comparative analysis on transcriptome sequencings of six Sargassum species in China WANG Guoliang, SUN Jing, LIU Guiming, WANG Liang, YU Jun, LIU Tao, CHI Shan, LIU Cui, GUO Haiyan, WANG Xumin, WU Shuangxiu 45 De novo sequencing and comparative analysis of three red algal species of Family Solieriaceae to discover putative genes associated with carrageenan biosysthesis SONG Lipu, WU Shuangxiu, SUN Jing, WANG Liang, LIU Tao, CHI Shan, LIU Cui, LI Xingang, YIN Jinlong, WANG Xumin, YU Jun 54 Comparative analysis of four essential Gracilariaceae species in China based on whole transcriptomic sequencing XU Jiayue, SUN Jing, YIN Jinlong, WANG Liang, WANG Xumin, LIU Tao, CHI Shan, LIU Cui, REN Lufeng, WU Shuangxiu, YU Jun 63 Tryptophan synthase of Phaeophyceae originated from the secondary host nucleus ZHANG Yalan, CHI Shan, WU Shuangxiu, LIU Cui, YU Jun, WANG Xumin, CHEN Shengping, LIU Tao 73 Origin and evolution of alginate-c5-mannuronan-epimerase gene based on transcriptomic analysis of brown algae WANG Ren, WANG Xumin, ZHANG Yalan, YU Jun, LIU Tao, CHEN Shengping, CHI Shan 86 Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China JIA Shangang, WANG Xumin, QIAN Hao, LI Tianyong, SUN Jing, WANG Liang,YU Jun, LI Xingang, YIN Jinlong, LIU Tao, WU Shuangxiu 94 Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China JIA Shangang, WANG Xumin, LI Tianyong, QIAN Hao, SUN Jing, WANG Liang, YU Jun, REN Lufeng, YIN Jinlong, LIU Tao, WU Shuangxiu 102 Endogenous viral elements in algal genomes WANG Liang, WU Shuangxiu, LIU Tao, SUN Jing, CHI Shan, LIU Cui, LI Xingang, YIN Jinlong, WANG Xumin, YU Jun 108 The discovery of archaea origin phosphomannomutase in algae based on the algal transcriptome FENG Yanjing, CHI Shan, LIU Cui, CHEN Shengping, YU Jun, WANG Xumin, LIU TaP PageII Acta Oceanologica Sinica Vol. 33 (2014) contents 1 Transcriptome sequencing of essential marine brown and red algal species in China and its significance in algal biology and phylogeny WU Shuangxiu, SUN Jing, CHI Shan, WANG Liang, WANG Xumin, LIU Cui, LI Xingang, YIN Jinlong, LIU Tao, YU Jun 13 Transcriptome-wide evolutionary analysis on essential brown algae (Phaeophyceae) in China SUN Jing, WANG Liang, WU Shuangxiu, WANG Xumin, XIAO Jingfa, CHI Shan, LIU Cui, REN Lufeng, ZHAO Yuhui, LIU Tao, YU Jun 20 Transcriptome characterization of Ishige okamurae (Phaeophyceae) shows strong environmental acclimation QU Jieqiong, WANG Xumin, CHI Shan, WU Shuangxiu, SUN Jing, LIU Cui, CHEN Shengping, YU Jun, LIU Tao 27 Analysis of Saccharina japonica transcriptome using the high-throughput DNA sequencing technique and its vanadium-dependent haloperoxidase gene LIANG Xiayuan, WANG Xumin, CHI Shan, WU Shuangxiu, SUN Jing, LIU Cui, CHEN Shengping, YU Jun, LIU Tao 37 Comparative analysis on transcriptome sequencings of six Sargassum species in China WANG Guoliang, SUN Jing, LIU Guiming, WANG Liang, YU Jun, LIU Tao, CHI Shan, LIU Cui, GUO Haiyan, WANG Xumin, WU Shuangxiu 45 De novo sequencing and comparative analysis of three red algal species of Family Solieriaceae to discover putative genes associated with carrageenan biosysthesis SONG Lipu, WU Shuangxiu, SUN Jing, WANG Liang, LIU Tao, CHI Shan, LIU Cui, LI Xingang, YIN Jinlong, WANG Xumin, YU Jun 54 Comparative analysis of four essential Gracilariaceae species in China based on whole transcriptomic sequencing XU Jiayue, SUN Jing, YIN Jinlong, WANG Liang, WANG Xumin, LIU Tao, CHI Shan, LIU Cui, REN Lufeng, WU Shuangxiu, YU Jun 63 Tryptophan synthase of Phaeophyceae originated from the secondary host nucleus ZHANG Yalan, CHI Shan, WU Shuangxiu, LIU Cui, YU Jun, WANG Xumin, CHEN Shengping, LIU Tao 73 Origin and evolution of alginate-c5-mannuronan-epimerase gene based on transcriptomic analysis of brown algae WANG Ren, WANG Xumin, ZHANG Yalan, YU Jun, LIU Tao, CHEN Shengping, CHI Shan 86 Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China JIA Shangang, WANG Xumin, QIAN Hao, LI Tianyong, SUN Jing, WANG Liang,YU Jun, LI Xingang, YIN Jinlong, LIU Tao, WU Shuangxiu 94 Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China JIA Shangang, WANG Xumin, LI Tianyong, QIAN Hao, SUN Jing, WANG Liang, YU Jun, REN Lufeng, YIN Jinlong, LIU Tao, WU Shuangxiu 102 Endogenous viral elements in algal genomes WANG Liang, WU Shuangxiu, LIU Tao, SUN Jing, CHI Shan, LIU Cui, LI Xingang, YIN Jinlong, WANG Xumin, YU Jun 108 The discovery of archaea origin phosphomannomutase in algae based on the algal transcriptome FENG Yanjing, CHI Shan, LIU Cui, CHEN Shengping, YU Jun, WANG Xumin, LIU TaP Number 3 Page 1 Energetics of lateral eddy diffusion/advection: Part I. Thermodynamics and energetics of vertical eddy diffusion HUANG Rui Xin 19 Energetics of lateral eddy diffusion/advection: Part II. Numerical diffusion/diffusivity and gravitational potential energy change due to isopycnal diffusion HUANG Rui Xin 40 Energetics of lateral eddy diffusion/advection: Part III. Energetics of horizontal and isopycnal diffusion/advection HUANG Rui Xin 58 Energetics of lateral eddy diffusion/advection: Part IV. Energetics of diffusion/advection in sigma coordinates and other coordinates HUANG Rui Xin 82 Mooring observations of internal solitary waves in the deep basin west of Luzon Strait HUANG Xiaodong, ZHAO Wei, TIAN Jiwei, YANG Qingxuan 90 Numerical study on tidal currents and seawater exchange in the Benoa Bay, Bali, Indonesia HENDRAWAN I Gede, ASAI Koji 101 Seasonal variations