Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Table S1. Family, Genus, Species and Common Name of all 119 species of shallow-water reef fish identified in this study. The temperature affiliation, level of endemism, the abundance of each species over the entire survey area and frequency (Percentage of sites (n = 112) at which the species was observed) are also recorded for each species Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference Froese and Fishes of Acanthurus Inshore ACANTHURDIAE 6 3% Tropical Pauly 2019 Indo-Pacific Australia grammoptilus Surgeonfish Randall 1956 (Bray 2019) Aplodactylus Western Fairclough et Western Fairclough et APLODACTYLIDAE 12 9% Temperate westralis Seacarp al. 2011 Australia al. 2011 Froese and Froese and Western Ostorhinchus Pauly 2019 Pauly 2019 APOGONIDAE Striped 2 1% Temperate Australia victoriae Paxton et al. Paxton et al. Cardinalfish 1989 1989 Fishes of Shaw's Fairclough et ARACANIDAE Aracana aurita 7 6% Temperate Australia Australia Cowfish al. 2011 (Bray 2018) Western Fishes of Anoplocapros Fairclough et Smooth 4 4% Temperate Australia Australia amygdaloides al. 2011 Boxfish (Bray 2018) Fishes of Anoplocapros Whitebarred Fairclough et 4 4% Temperate Australia Australia lenticularis Boxfish al. 2011 (Bray 2018) Froese and Fishes of Latropiscis Sergeant Pauly 2019 Australia AULOPIDAE 5 3% Subtropical Australia purpurissatus Baker Paxton and (Bray and Niem 1999 Gomon 2018) Froese and Fishes of Centroberyx Pauly 2019 BERYCIDAE Swallowtail 2928 20% Temperate Indo-Pacific Australia lineatus May and (Bray 2017) Maxwell 1986 Froese and Froese and BLENNIIDAE Blenniidae sp Blennies 8 5% Tropical Pauly 2019 Other Pauly 2019 Nelson 1994 Nelson 1994 1 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference Fishes of Callanthias Fairclough et CALLANTHIIDAE Splendid Perch 2 1% Temperate Indo-Pacific Australia australis al. 2011 (Bray 2018) Fishes of Chelmonops Fairclough et Australia CHAETODONTIDAE Western Talma 155 54% Temperate Australia curiosus al. 2011 (Bray and Gomon 2018) Chaetodon Western Fairclough et Western Fairclough et 49 11% Subtropical assarius Butterflyfish al. 2011 Australia al. 2011 Froese and Froese and Heniochus Longfin 4 3% Tropical Pauly 2019 Indo-Pacific Pauly, 2019 acuminatus Bannerfish Steene 1978 Steene 1978 Froese and Fishes of Bathytoshia Smooth Pauly 2019 DASYATIDAE 2 2% Temperate Indo-Pacific Australia brevicaudata Stingray Last et al. (Bray 2018) 2016 Froese and Fishes of Bathytoshia Pauly 2019 Black Stingray 1 1% Subtropical Indo-Pacific Australia lata Compagno (Bray 2018) 1999 Froese and Dinolestes Fishes of DINOLESTIDAE Longfin Pike 139 11% Temperate Pauly 2019 Australia lewini Australia Nelson 1984 Fishes of Enoplosus Fairclough et ENOPLOSIDAE Old Wife 570 32% Temperate Australia Australia armatus al. 2011 (Bray) Fishes of Parequula Fairclough et GERREIDAE Silverbelly 10 4% Temperate Australia Australia melbournensis al. 2011 (Bray) Fishes of Fairclough et GIRELLIDAE Girella zebra Zebrafish 823 44% Temperate Australia Australia al. 2011 (Bray 2018) Girella Western Rock Fairclough et Western Fairclough et 47 12% Temperate tephraeops Blackfish al. 2011 Australia al. 2011 2 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference West Glaucosoma Fairclough et Western Fairclough et GLAUCOSOMATIDAE Australian 60 20% Subtropical hebraicum al. 2011 Australia al. 2011 Dhufish Fishes of Plectorhinchus Goldspotted Fairclough et HAEMULIDAE 111 35% Tropical Indo-Pacific Australia flavomaculatus Sweetlips al. 2011 (Bray) Froese and Fishes of Diagramma Painted 3 2% Subtropical Pauly 2019 Indo-Pacific Australia labiosum Sweetlips Kuiter 1993 (Bray 2017) Froese and Pauly 2019 Fishes of Plectropomus Common Coral 4 2% Tropical Haemstra Indo-Pacific Australia leopardus Trout and Randall (Bray 2019) 1993 Fishes of Heterodontus Port Jackson Fairclough et HETERODONTIDAE 1 1% Temperate Australia Australia portusjacksoni Shark al. 2011 (Bray 2019) Silver Kyphosus Fishes of Drummer Fairclough et KYPHOSIDAE sydneyanus / 826 64% Temperate Indo-Pacific Australia / Gladius Sea al. 2011 gladius (Bray) Chub Western Buffalo Kyphosus Bream / Grey Fairclough et Fairclough et cornelii / bigibbus 1249 46% Subtropical Australia Drummer / al. 2011 al. 2011 / vaigiensis Brassy Drummer Fishes of Notolabrus Brownspotted Fairclough et LABRIDAE 1374 94% Temperate Australia Australia parilus Wrasse al. 2011 (Bray 2019) Coris Western King Lek et al. Western Fairclough et 7053 91% Subtropical auricularis Wrasse 2011 Australia al. 2011 3 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference Pseudolabrus Redband Fairclough et Western Fairclough et 1078 69% Temperate biserialis Wrasse al. 2011 Australia al. 2011 Fishes of Ophthalmolepis Southern Fairclough et 993 63% Temperate Australia Australia lineolatus Maori Wrasse al. 2011 (Bray 2019) Fishes of Olisthops Fairclough et Herring Cale 491 62% Temperate Australia Australia cyanomelas al. 2011 (Bray) Fishes of Austrolabrus Blackspotted Fairclough et 274 47% Temperate Australia Australia maculatus Wrasse al. 2011 (Bray 2018) Halichoeres Brownfield's Fairclough et Western Fairclough et 235 42% Subtropical brownfieldi Wrasse al. 2011 Australia al. 2011 Fishes of Achoerodus Western Shepherd 174 41% Temperate Australia Australia gouldii Blue Groper 2007 (Bray 2018) Fishes of Bodianus Western Cossington et Australia 60 26% Temperate Australia frenchii Foxfish al. 2010 (Gomon and Bray 2019) Cure et al. Choerodon Baldchin 2015 Western Fairclough et 95 26% Subtropical rubescens Groper Cure et al. Australia al. 2011 2018 Fishes of Pictilabrus Senator Fairclough et 32 18% Temperate Australia Australia laticlavius Wrasse al. 2011 (Bray) Froese and Froese and Anampses Scribbled Pauly 2019 Pauly 2019 169 17% Tropical Indo-Pacific geographicus Wrasse Westneat Westneat, 2001 2001 4 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference Froese and Fishes of Thalassoma Sevenband Pauly 2019 Western 73 16% Tropical Australia septemfasciatum Wrasse Parenti and Australia (Bray 2018) Randall 2000 Thalassoma Fairclough et Fishes of Moon Wrasse 57 14% Tropical Indo-Pacific lunare al. 2011 Australia Froese and Scarus ghobban Bluebarred Fairclough et Pauly 2019 105 13% Tropical Indo-Pacific / schlegeli Parrotfish al. 2011 Parenti and Randall 2000 Fishes of Thalassoma Green Moon Fairclough et 116 10% Tropical Indo-Pacific Australia lutescens Wrasse al. 2011 (Bray) Fishes of Labroides Common Fairclough et 17 8% Tropical Indo-Pacific Australia dimidiatus Cleanerfish al. 2011 (Bray 2017) Little Rainbow Fairclough et Western Fairclough et Dotalabrus alleni 30 6% Temperate Wrasse al. 2011 Australia al. 2011 Fishes of Eupetrichthys Snakeskin Fairclough et 14 6% Temperate Australia Australia angustipes Wrasse al. 2011 (Bray 2018) Fishes of Heteroscarus Fairclough et Rainbow Cale 5 4% Temperate Australia Australia acroptilus al. 2011 (Bray 2017) Froese and Fishes of Chlorurus Greenfin Pauly 2019 4 2% Tropical Indo-Pacific Australia sordidus Parrotfish Eschmeyer (Bray 2017) 1997 Froese and Froese and Anampses Blacktail 3 1% Tropical Pauly 2019 Indo-Pacific Pauly 2019 melanurus Wrasse Myers 1991 Myers 1991 Dotalabrus Castelnau's Froese and Fishes of 2 1% Temperate Australia aurantiacus Wrasse Pauly 2019 Australia 5 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog Ser 649: 125–140 – https://doi.org/10.3354/meps13445 Common Frequency Supporting Supporting Family Scientific Name Abundance Affiliation Endemism Name (%) Reference Reference Russell 1988 (Bray 2018) Fishes of Haletta Blue Fairclough et 2 1% Temperate Australia Australia semifasciata Weed-Whiting al. 2011 (Bray) Fishes of Pseudojuloides Long Green Fairclough et 1 1% Tropical Indo-Pacific Australia elongatus Wrasse al. 2011 (Bray 2018) Froese and Fishes of Scarus Sixband Pauly 2019 2 1% Tropical Indo-Pacific Australia frenatus Parrotfish Parenti and (Bray) Randall 2000 Fishes of Stethojulis Redspot Fairclough et 1 1% Temperate Indo-Pacific Australia bandanensis Wrasse al. 2011 (Bray 2018) Bluethroat Suezichthys Fairclough et Western Fairclough et Rainbow 1 1% Subtropical cyanolaemus al. 2011 Australia al. 2011 Wrasse Fishes of Psammoperca Waigieu Fairclough et LATIDAE 20 9% Tropical Australia Australia waigiensis Seaperch al. 2011 (Bray 2018) Fishes of Cheilodactylus Redlip Fairclough et Western LATRIDAE 88 34% Subtropical Australia rubrolabiatus Morwong al. 2011 Australia (Bray 2019) Froese and Fishes of Nemadactylus Pauly 2019 Blue Morwong 85 27% Temperate Australia Australia valenciennesi May and (Bray 2019) Maxwell 1986 Froese and Dactylophora Dusky Fairclough et Pauly 2019 41 17% Temperate Australia nigricans Morwong al. 2011 May and Maxwell 1986 6 Supplement to Goldsworthy et al. (2020) – Mar Ecol Prog