Appendix 1.Xlsx

Appendix 1.Xlsx

List of 780 probable essential proteins from host-pathogen common and pathogen’s unique pathways. No Uniprot ID Entry name Protein names Gene names Length Associated metabolic pathways 1 O82884 O82884_ECO57 Type II secretion pathway related protein (Type II secretion protein)etpE ECO57PM03 L7034 501 Bacterial secretion system* 2 O82908 O82908_ECO57 Single-stranded DNA-binding protein ssb ECO57PM49 150 DNA replication Mismatch repair Homologous recombination 3 O85343 MANB_ECO57 Phosphomannomutase (PMM) (EC 5.4.2.8) manB Z3194 ECs2835 456 Fructose and mannose metabolism Amino sugar and nucleotide sugar metabolism 4 P0A3L9 KITH_ECO57 Thymidine kinase (EC 2.7.1.21) tdk Z2015 ECs1740 205 Pyrimidine metabolism 5 P0A4D1 RS6_ECO57 30S ribosomal protein S6 rpsF Z5809 ECs5176 131 Ribosome 6 P0A6A1 UBIB_ECO57 Probable ubiquinone biosynthesis protein UbiB ubiB aarF Z5357 ECs4765 546 Ubiquinone and other terpenoid-quinone biosynthesis 7 P0A6A5 ACKA_ECO57 Acetate kinase (EC 2.7.2.1) (Acetokinase) ackA ack Z3558 ECs3180 400 Taurine and hypotaurine metabolism Pyruvate metabolism Propanoate metabolism Methane metabolism* 8 P0A6B9 ISCS_ECO57 Cysteine desulfurase (EC 2.8.1.7) iscS Z3797 ECs3396 404 Thiamine metabolism Sulfur relay system 9 P0A6D9 AROK_ECO57 Shikimate kinase 1 (SK 1) (EC 2.7.1.71) aroK Z4743 ECs4232 173 Phenylalanine, tyrosine and tryptophan biosynthesis 10 P0A6E3 AROL_ECO57 Shikimate kinase 2 (SK 2) (EC 2.7.1.71) aroL Z0484 ECs0438 174 Phenylalanine, tyrosine and tryptophan biosynthesis 11 P0A6F2 CARA_ECO57 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (Carbamoyl-phosphatecarA pyrA Z0037 synthetase ECs0035 glutamine chain)382 Pyrimidine metabolism Alanine, aspartate and glutamate metabolism 12 P0A6F4 GLPK_ECO57 Glycerol kinase (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase)glpK (Glycerokinase) Z5471 ECs4851 (GK) 502 Glycerolipid metabolism 13 P0A6F7 CH60_ECO57 60 kDa chaperonin (GroEL protein) (Protein Cpn60) groL groEL mopA Z5748 ECs5124 548 RNA degradation 14 P0A6I2 KCY_ECO57 Cytidylate kinase (CK) (EC 2.7.4.25) (Cytidine monophosphate kinase)cmk mssA (CMP Z1256 kinase) ECs0993 227 Pyrimidine metabolism 15 P0A6I5 COAA_ECO57 Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid kinase) coaA panK rts Z5545 ECs4901 316 Pantothenate and CoA biosynthesis 16 P0A6I7 COAD_ECO57 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (Dephospho-CoAcoaD kdtBpyrophosphorylase) Z5058 ECs4509 (Pantetheine-phosphate159 Pantothenate adenylyltransferase) and CoA biosynthesis (PPAT) 17 P0A6J0 COAE_ECO57 Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase)coaE Z0113 ECs0107 206 Pantothenate and CoA biosynthesis 18 P0A6J2 CYSC_ECO57 Adenylyl-sulfate kinase (EC 2.7.1.25) (APS kinase) (ATP adenosine-5'-phosphosulfatecysC Z4058 ECs3604 3'-phosphotransferase)201 Purine(Adenosine-5'-phosphosulfate metabolism kinase) Sulfur metabolism 19 P0A6J7 DADA_ECO57 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) dadA dadR Z1952 ECs1684 432 Phenylalanine metabolism 20 P0A6J9 DDLA_ECO57 D-alanine--D-alanine ligase A (EC 6.3.2.4) (D-Ala-D-Ala ligase A)ddlA (D-alanylalanine Z0477 ECs0431 synthetase A) 364 D-Alanine metabolism* Peptidoglycan biosynthesis* 21 P0A6K2 DAPF_ECO57 Diaminopimelate epimerase (DAP epimerase) (EC 5.1.1.7) dapF Z5326 ECs4739 274 Lysine biosynthesis 22 P0A6K8 DEOB_ECO57 Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase) deoB drm thyR Z5985 ECs5342 407 Pentose phosphate pathway Purine metabolism 23 P0A6Q1 ENO_ECO57 Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerateeno Z4094 ECs3639 dehydratase) 432 Glycolysis / Gluconeogenesis RNA degradation Methane metabolism* 24 P0A6Q4 FABA_ECO57 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)fabA (Beta-hydroxydecanoyl Z1304 ECs1038 thioester dehydrase)172 Fatty acid biosynthesis 25 P0A6Q8 FABZ_ECO57 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase ((3R)-hydroxymyristoylfabZ Z0192 ECs0182 ACP dehydrase) (EC 4.2.1.-)151 Fatty acid biosynthesis 26 P0A6R2 FABH_ECO57 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.180) (3-oxoacyl-[acyl-carrier-protein]fabH Z1730 ECs1469 synthase III) (Beta-ketoacyl-ACP317 Fatty acid biosynthesis synthase III) (KAS III) (EcFabH) 27 P0A6S9 GPDA_ECO57 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (NAD(P)H-dependentgpsA Z5035 ECs4486 glycerol-3-phosphate339 dehydrogenase)Glycerophospholipid metabolism 28 P0A6T2 G6PI_ECO57 Glucose-6-phosphate isomerase (GPI) (EC 5.3.1.9) (Phosphoglucosepgi isomerase)Z5623 ECs5008 (PGI) (Phosphohexose isomerase)549 Glycolysis (PHI) / Gluconeogenesis Pentose phosphate pathway Starch and sucrose metabolism Amino sugar and nucleotide sugar metabolism 29 P0A6T7 GCH1_ECO57 GTP cyclohydrolase 1 (EC 3.5.4.16) (GTP cyclohydrolase I) (GTP-CH-I)folE Z3409 ECs3045 222 Folate biosynthesis 30 P0A6V3 GLGC_ECO57 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) (ADP-glucoseglgC pyrophosphorylase)Z4792 ECs4275 (ADPGlc PPase)431 (ADP-glucoseStarch and sucrose synthase) metabolism Amino sugar and nucleotide sugar metabolism 31 P0A6X2 HEM1_ECO57 Glutamyl-tRNA reductase (GluTR) (EC 1.2.1.70) hemA Z1981 ECs1715 418 Porphyrin and chlorophyll metabolism 32 P0A6X5 HFQ_ECO57 Protein hfq (HF-1) (Host factor-I protein) (HF-I) hfq Z5779 ECs5148 102 RNA degradation 33 P0A6Z0 DNAK_ECO57 Chaperone protein DnaK (HSP70) (Heat shock 70 kDa protein) (HeatdnaK shock Z0014 protein ECs0014 70) 638 RNA degradation 34 P0A719 KPRS_ECO57 Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (Phosphoribosylprs prsA Z1978 pyrophosphate ECs1712 synthase) (P-Rib-PP315 Pentose synthase) phosphate (PRPP pathway synthase) Purine metabolism 35 P0A727 LPXC_ECO57 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaselpxC (EC Z01063.5.1.-) ECs0100 (UDP-3-O-acyl-GlcNAc deacetylase)305 Lipopolysaccharide biosynthesis* 36 P0A732 MGSA_ECO57 Methylglyoxal synthase (MGS) (EC 4.2.3.3) mgsA Z1314 ECs1047 152 Pyruvate metabolism 37 P0A740 MOAC_ECO57 Molybdenum cofactor biosynthesis protein C moaC chlA3 Z1002 ECs0861 161 Folate biosynthesis Sulfur relay system 38 P0A760 NAGB_ECO57 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (GlcN6P deaminase)nagB glmD (GNPDA) Z0825 (Glucosamine-6-phosphateECs0708 266 Amino isomerase) sugar and nucleotide sugar metabolism 39 P0A764 NDK_ECO57 Nucleoside diphosphate kinase (NDK) (NDP kinase) (EC 2.7.4.6)ndk (Nucleoside-2-P Z3781 ECs3380 kinase) 143 Purine metabolism Pyrimidine metabolism 40 P0A778 RPPH_ECO57 RNA pyrophosphohydrolase (EC 3.6.1.-) ((Di)nucleoside polyphosphaterppH nudH hydrolase) Z4147 ECs3687 176 RNA degradation 41 P0A795 PDXJ_ECO57 Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2) pdxJ Z3845 ECs3430 243 Vitamin B6 metabolism 42 P0A797 K6PF1_ECO57 6-phosphofructokinase isozyme 1 (EC 2.7.1.11) (6-phosphofructokinasepfkA Z5460 isozyme ECs4841 I) (Phosphofructokinase320 1) (PhosphohexokinaseGlycolysis / Gluconeogenesis 1) Pentose phosphate pathway Fructose and mannose metabolism Galactose metabolism Methane metabolism* 43 P0A7A3 GPMB_ECO57 Probable phosphoglycerate mutase GpmB (EC 5.4.2.1) (PGAM) (Phosphoglyceromutase)gpmB Z5997 ECs5353 215 Glycine, serine and threonine metabolism 44 P0A7B0 IPYR_ECO57 Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase)ppa Z5837 ECs5204(PPase) 176 Oxidative phosphorylation 45 P0A7B7 PROB_ECO57 Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK)proB Z0303 ECs0269 367 Arginine and proline metabolism 46 P0A7D6 PURA_ECO57 Adenylosuccinate synthetase (AMPSase) (AdSS) (EC 6.3.4.4) (IMP--aspartatepurA Z5784 ECs5153 ligase) 432 Purine metabolism Alanine, aspartate and glutamate metabolism 47 P0A7D9 PUR7_ECO57 Phosphoribosylaminoimidazole-succinocarboxamide synthase (ECpurC 6.3.2.6) Z3735 (SAICAR ECs3338 synthetase) 237 Purine metabolism 48 P0A7E2 PYRD_ECO57 Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (DHOdehase)pyrD (DHOD) Z1294 ECs1029(DHODase) (Dihydroorotate336 oxidase)Pyrimidine metabolism 49 P0A7E7 PYRG_ECO57 CTP synthase (EC 6.3.4.2) (CTP synthetase) (UTP--ammonia ligase)pyrG Z4095 ECs3640 545 Pyrimidine metabolism 50 P0A7F1 PYRH_ECO57 Uridylate kinase (UK) (EC 2.7.4.22) (Uridine monophosphate kinase)pyrH (UMP Z0182 kinase) ECs0173 (UMPK) 241 Pyrimidine metabolism 51 P0A7F5 PYRI_ECO57 Aspartate carbamoyltransferase regulatory chain pyrI Z5855 ECs5221 153 Pyrimidine metabolism Alanine, aspartate and glutamate metabolism 52 P0A7G8 RECA_ECO57 Protein RecA (Recombinase A) recA Z4002 ECs3556 353 Homologous recombination 53 P0A7H2 RECF_ECO57 DNA replication and repair protein RecF recF uvrF Z5191 ECs4635 357 Homologous recombination 54 P0A7I8 RIBA_ECO57 GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II) ribA Z2531 ECs1850 196 Riboflavin metabolism 55 P0A7J1 RIBB_ECO57 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)ribB (EC htrP 4.1.99.12) Z4399 ECs3929 217 Riboflavin metabolism 56 P0A7J5 RL10_ECO57 50S ribosomal protein L10 rplJ Z5558 ECs4908 165 Ribosome 57 P0A7J9 RL11_ECO57 50S ribosomal protein L11 rplK Z5556 ECs4906 142 Ribosome 58 P0A7K4 RL7_ECO57 50S ribosomal protein L7/L12 (L8) rplL Z5559 ECs4909 121 Ribosome 59 P0A7K8 RL19_ECO57 50S ribosomal protein L19 rplS Z3900 ECs3469 115 Ribosome 60 P0A7L2 RL1_ECO57 50S ribosomal protein L1 rplA Z5557 ECs4907 234 Ribosome 61 P0A7L5 RL20_ECO57 50S ribosomal protein L20 rplT Z2745 ECs2423 118 Ribosome 62 P0A7M0 RL27_ECO57 50S ribosomal protein L27 rpmA Z4547 ECs4064 85 Ribosome 63 P0A7M4 RL28_ECO57 50S ribosomal protein L28 rpmB Z5061 ECs4512 78 Ribosome 64 P0A7M8 RL29_ECO57 50S ribosomal protein L29 rpmC

View Full Text

Details

  • File Type
    pdf
  • Upload Time
    -
  • Content Languages
    English
  • Upload User
    Anonymous/Not logged-in
  • File Pages
    29 Page
  • File Size
    -

Download

Channel Download Status
Express Download Enable

Copyright

We respect the copyrights and intellectual property rights of all users. All uploaded documents are either original works of the uploader or authorized works of the rightful owners.

  • Not to be reproduced or distributed without explicit permission.
  • Not used for commercial purposes outside of approved use cases.
  • Not used to infringe on the rights of the original creators.
  • If you believe any content infringes your copyright, please contact us immediately.

Support

For help with questions, suggestions, or problems, please contact us