Table S2- Two-fold gene expression changes ( Down regulated) in MCF10CA1a Cytoband GeneName Description logFC Fold change 15q26.3 ALDH1A3 Homo sapiens aldehyde dehydrogenase 1 family, member A3 (ALDH1A3), mRNA [NM_000693]-8.72223659 0.002367801 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.65815781 0.00247534 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.61496372 0.002550572 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.51971624 0.002724645 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.50804727 0.002746772 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.4723102 0.002815662 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.45251391 0.002854564 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.4341184 0.002891195 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.39472071 0.002971237 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.38369568 0.00299403 16q22.1 CDH1 Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA [NM_004360]-8.37213011 0.003018128 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.11714669 0.003601599 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.09525258 0.003656673 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.0879027 0.00367535 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.06404876 0.003736624 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.03211157 0.003820265 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.01563314 0.00386415 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -8.01448896 0.003867216 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -7.99661285 0.003915432 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -7.98791634 0.003939105 2q13 IL1B Homo sapiens interleukin 1, beta (IL1B), mRNA [NM_000576] -7.89782852 0.004192921 11q23.3 EVA1 Homo sapiens epithelial V-like antigen 1 (EVA1), transcript variant 2, mRNA [NM_144765]-7.72559426 0.004724593 11q13.3 TMEM16A Homo sapiens transmembrane protein 16A (TMEM16A), mRNA [NM_018043] -7.62839995 0.005053855 11q12.1 TCN1 Homo sapiens transcobalamin I (vitamin B12 binding protein, R binder family) (TCN1),-7.10747961 mRNA [NM_001062]0.007251627 19q13.2 CEACAM1 Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)-7.09780148 (CEACAM1),0.007300437 transcript variant 1, mRNA [NM_001712] 16q22.1 HAS3 Homo sapiens hyaluronan synthase 3 (HAS3), transcript variant 1, mRNA [NM_005329]-7.0597474 0.007495563 3q28 TP73L Homo sapiens tumor protein p73-like (TP73L), mRNA [NM_003722] -7.049794 0.007547455 2p21 TACSTD1 Homo sapiens tumor-associated calcium signal transducer 1 (TACSTD1), mRNA [NM_002354]-7.04965967 0.007548158 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.84922907 0.008673145 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.84204852 0.00871642 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.80766338 0.008926663 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.8018551 0.008962674 18q22.1 CDH19 Homo sapiens cadherin 19, type 2 (CDH19), mRNA [NM_021153] -6.78701871 0.00905532 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.78114323 0.009092273 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.78046968 0.009096519 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.76974135 0.009164416 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.72971554 0.009422231 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.7159207 0.009512757 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.70205136 0.009604649 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.67303909 0.009799752 10q23.31 ANKRD22 Homo sapiens ankyrin repeat domain 22 (ANKRD22), mRNA [NM_144590] -6.58448133 0.010420141 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.57947782 0.010456343 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.56777199 0.010541529 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.54206905 0.010731019 10q22.1 COL13A1 Homo sapiens collagen, type XIII, alpha 1 (COL13A1), transcript variant 1, mRNA [NM_005203]-6.53624255 0.010774446 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.53375895 0.01079301 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.52727966 0.010841591 2q37.1 INPP5D Homo sapiens inositol polyphosphate-5-phosphatase, 145kDa (INPP5D), transcript -6.49678498variant 1, mRNA0.011073192 [NM_001017915] 3q25.33 RARRES1 Homo sapiens retinoic acid receptor responder (tazarotene induced) 1 (RARRES1),-6.47594299 transcript variant0.011234323 2, mRNA [NM_002888] Xq22.3 RNF128 Homo sapiens ring finger protein 128 (RNF128), transcript variant 1, mRNA [NM_194463]-6.47594069 0.011234341 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.46476152 0.011321732 20p12.2 JAG1 Homo sapiens jagged 1 (Alagille syndrome) (JAG1), mRNA [NM_000214] -6.44293479 0.011494322 7p15.2 NFE2L3 Homo sapiens nuclear factor (erythroid-derived 2)-like 3 (NFE2L3), mRNA [NM_004289]-6.43385296 0.011566908 5q33.1 SPARC Homo sapiens secreted protein, acidic, cysteine-rich (osteonectin) (SPARC), mRNA-6.42554153 [NM_003118]0.011633738 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.41060685 0.011754795 12q13.13 KRT6B Homo sapiens keratin 6B (KRT6B), mRNA [NM_005555] -6.36153907 0.012161466 13q22.3 SCEL Homo sapiens sciellin (SCEL), transcript variant 2, mRNA [NM_144777] -6.33795975 0.012361865 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.32588496 0.012465763 4p15.33 HS3ST1 Homo sapiens heparan sulfate (glucosamine) 3-O-sulfotransferase 1 (HS3ST1), mRNA-6.32051227 [NM_005114]0.012512273 7p14.1 AK001903 Homo sapiens cDNA FLJ11041 fis, clone PLACE1004405. [AK001903] -6.29795993 0.012709403 2q37.1 UGT1A6 Homo sapiens UDP glucuronosyltransferase 1 family, polypeptide A6 (UGT1A6), transcript-6.28824208 variant0.012795301 1, mRNA [NM_001072] Xq23 IL13RA2 Homo sapiens interleukin 13 receptor, alpha 2 (IL13RA2), mRNA [NM_000640] -6.20590513 0.01354679 1q21.3 S100A14 Homo sapiens S100 calcium binding protein A14 (S100A14), mRNA [NM_020672] -6.1528042 0.014054694 2q13 IL1A Homo sapiens interleukin 1, alpha (IL1A), mRNA [NM_000575] -6.09633223 0.014615751 9q33.3 LCN2 Homo sapiens lipocalin 2 (oncogene 24p3) (LCN2), mRNA [NM_005564] -6.0848643 0.014732394 1p22.3 CLCA2 Homo sapiens chloride channel, calcium activated, family member 2 (CLCA2), mRNA-6.08035821 [NM_006536]0.014778481 14q32.2 BDKRB2 Homo sapiens bradykinin receptor B2 (BDKRB2), mRNA [NM_000623] -6.0794817 0.014787462 6q22.31 GJA1 Homo sapiens gap junction protein, alpha 1, 43kDa (connexin 43) (GJA1), mRNA [NM_000165]-6.05320183 0.015059296 18q12.1 DSG3 Homo sapiens desmoglein 3 (pemphigus vulgaris antigen) (DSG3), mRNA [NM_001944]-6.04690619 0.015125156 20q13.33 COL9A3 Homo sapiens collagen, type IX, alpha 3 (COL9A3), mRNA [NM_001853] -6.04498952 0.015145263 4q32.1 LRAT Homo sapiens lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)-6.04457193 (LRAT),0.015149648 mRNA [NM_004744] 2p23.3 KRTCAP3 Homo sapiens clone DNA129535 MRV222 (UNQ3066) mRNA, complete cds. [AY358993]-6.03013418 0.015302019 5p13.2 SLC1A3 Homo sapiens solute carrier family 1 (glial high affinity glutamate transporter), member-5.97869872 3 (SLC1A3),0.015857413 mRNA [NM_004172] 4q13.3 EREG Homo sapiens epiregulin (EREG), mRNA [NM_001432] -5.93286444 0.01636929 5q11.2 FST Homo sapiens follistatin (FST), transcript variant FST344, mRNA [NM_013409] -5.9300464 0.016401296 18q12.1 DSC3 Homo sapiens desmocollin 3 (DSC3), transcript variant Dsc3b, mRNA [NM_024423]-5.87860984 0.016996602 16q22.3 CALB2 Homo sapiens calbindin 2, 29kDa (calretinin) (CALB2), transcript variant CALB2, mRNA-5.85144656 [NM_001740]0.017319648 7q21.11 SEMA3A Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted,-5.82498859 (semaphorin)0.017640208 3A (SEMA3A), mRNA [NM_006080] 22q12.3 AA837799 AA837799 oe06h09.s1 NCI_CGAP_Ov2 Homo sapiens cDNA clone IMAGE:1385153,-5.80747166 mRNA sequence0.017855698 [AA837799] 19q13.12 FXYD3 Homo sapiens FXYD domain containing ion transport regulator 3 (FXYD3), transcript-5.79132837 variant 1, mRNA0.018056619 [NM_005971] 21q21.1 PRSS7 Homo sapiens protease, serine, 7 (enterokinase) (PRSS7), mRNA [NM_002772] -5.77467435 0.018266267 1p36.21 A_32_P75141 Unknown -5.72468009 0.01891035 17q21.2 KRT23 Homo sapiens keratin 23 (histone deacetylase inducible) (KRT23),