SNAKE RIVER AQUATIC SPECIES RECOVERY PLAN DECEMBER 1995 7 7 7 7 7 7 7 7 7 7 Homedale 0 Boise C.J. Strike Reservoir American Falls Recovery Area - Shaded Reservoir SNAKE RIVER AQUATIC SPECIES RECOVERY PLAN December 1995 Prepared by: U.S. Fish and Wildlife Service Snake River Basin Office, Ecological Services Boise, Idaho Approved: Regional irec r . Fish and Wildlife Service Date: /1/zA/f= DISCLAIMER PAGE RecovexY plans delineate actions which are believed to be required to recover and/or protect the species. Plans are prepared by the U.S. Fish andWildlife Service, sometimes with the assistance of recovery teams, contractors, State agencies, and others. Objectives will be attained and any neceSs~~y funds made available subject to budgetary and other constraints effecting the parties involved, as well as the need to address other priorities. Recovery plans do not nece55~y represent the views nor the official positions or approval of any individuals or agencies involved in the plan formulation, other than the U.S. Fish and Wildlife Service. Recovery plans represent the official position of the U.S. Fish and Wildlife Service ~niyafter they have been signed by the Regional Director or Director as approved Approved recovery plans are subject to modification as dictated by new findings, changes in species status, and the completion of recovery tasks. JRAfl1E~EC1IAflQ~i: U.S. Fish and Wildlife Service. 1995. Snake River Aquatic Species Recovery Plan. Snake River Basin Office, Ecological Services, Boise, Idaho. 92 pp. Additional copies may be purchased from: Fish and Wildlife Reference Service 5430 Grosvenor Lane, Suite 110 Bethedsa, Maryland 20814 301/492-3421 or 1-800-582-3421 . w TABLE OF CONTENTS Page EXECT~~IVE SUMMARY LIST ~F SYMBOLS AND ABBREVIATIONS iv WHAT IS A RECOVERY PLAN? vi wHAT IS THE SNAKE RiVER ECOSYSTEM? vi I. INTRODUCTION A. Overview B. Species Accounts 4 C. Reasons forDecline 17 D. Conservation Measures 20 E. Strategy for Recovery 27 II. RECOVERY A. Objectives 29 B. Criteria 29 C. Narrative 32 Ill. REFERENCES CITED 54 IV. IMPLEMENTATION SCHEDULE 58 V. APPENDICES A. Fish fauna of the Snake River drainage 66 B. Aquatic molluscs of the Snake River from C.J. 68 Strike upstream to MilnerDam C. Location, history, natural history and water use 70 history of the Middle Snake River D. Landmarks andassociated river miles/river 78 kilometers along the Snake River in Idaho TABLE OF CONTENTS (CONT.) E. List of instream flow rights currently held by the 79 state in the Middle Snake River F. Review of the Technical/Agency Review Draft of the 80 Snake River Aquatic Species Recovery Plan VI. LIST OF FIGURES 1. Map of the Snake River in Idaho showing recovery 3 area 2. Map of Idaho Springsnail current and historic distribution 5 3. Map of Utah Valvata current and historic distribution 7 4. Map of Snake River Physa current and historic distribution 9 5. Map of Bliss Rapids Snail current andhistoric distribution 11 6. Map of Banbury Springs Lanx current distribution 13 7. Map of existing proposed hydropower projects on the 18 middle Snake River 8. Flow chart summarizingthe Snake River aquatic 33 species recovery measures EXECUTiVE SUMMARY OF THE RECOVERY PLAN FOR SNAKE RIVER AQUATIC SPECIES IN SOUTH CENTRAL IDAHO Current Status: The middle Snake River from C.J. Strike Reservoir to American Falls Dam provides habitat for the 5 Snake River snails listed as threatened (the Bliss Rapids snail) or endangered (the Snake River physa, Banbury Springs lanx, Utah valvata snail, and Idaho springsnail) under the Federal Endangered Species Act. With the arrival of exploration and development, the Snake River ecosystem has undergone significant transformation from a primarily free-flowing, cold-water system to a slower-moving and warmer system. At present, the listed species occur mainly in the remaining free-flowing reaches or spring alcove habitats of the Snake River. Habitat Requirements and Liinitin~ Factors: Ecologically, the 5 listed species share many characteristics, and in some locations two or more can be found sharing the same habitat. Their habitat requirements generally include cold, clean, well-oxygenated flowing water of low turbidity. With the exception of Utah valvata andpossibly the Idaho springsnail, the listed snails prefer gravel-to-boulder size substrate. Despite these affinities, each of the 5 species has slightly different habitatpreferences. The Idaho spnngsnail and Snake River physa are found only in the free-flowing mainstem Snake River. The Bliss Rapids snail and Utah valvata occur in both cold-water springs or mainstem habitats, while the Banbury Springs lanxonly occurs in cold-water springs. The fauna dependent on free- flowing reaches of the middle Snake River have been declining since the early 19thcentury due to fragmentation of remaining free-flowing habitats and deteriorating water quality. Recovery Obiectives: The short-term recovery objectives ofthis recovery plan are to protect known live colonies of the federally listed snails by eliminating or reducing known threats. The long-term objectives are to restore viable, self-reproducing colonies of the 5 listed snails within specific geographic ranges (referenced under Recovery Criteriabelow) to the point that they are delisted. Recovery Criteria: The 5 federally listed snails may be reclassified or recovered by implementing various conservation measures that preserve and restore both mainstem Snake River and tributary cold-water spring habitats. These habitats are essential to their survival within the specified recovery areasdescribed below. The Snake River Aquatic Species Recovery Plan (Plan) identifies specific recovery areas and short-termrecovery goals that will provide downlistingldelistingcriteria for each of the 5 listed species. Recovery will be based on detection of increasing, self-reproducing colonies at preselected monitoring sites within each species recovery area for a5-year period. Monitoring sites selected will generally reflect areas of known live snailcollections from the past 15 years and will be located to represent the outer most boundaries of the recovery area for each species. i o Idah~pnng~nail: - The recovery area (see Figure 2) includes the mainstem Snake River between river kilometer (rkxn) 834 to 890 (river mile (rm) 518 to 553). o Utah valvata snail - The recovery area (see Figure 3) includes the mainstem Snake River and tributary cold-water spring complexes between rkm 932 to 1142 (rm 572 to 709). o Snake River phvsa - The recovery area (see Figure 4) includes the mainstem Snake River between rkin 890 to 1086 (rm 553 to 675). o Bliss Rapids snail - The recovery area (see Figure 5) includes the mainstem Snake River and tributary cold-water spring complexes between rkm 880 to 942 (rm 547 to 585). o Banbury Springs lanx - The recovery area (see Figure 6) and monitoring sites for Banbury Springs lanx includes tributary cold-water spring complexes to the Snake River between rkm 941.5 to 948.8 (rm 584.8 to 589.3). Actions Needed to Initiate Recovery 1. Ensure water quality standards for cold-water biota and habitatconditions so that viable, self-reproducing snail colonies are established in free-flowing mainstemand cold-water spring habitats within specified geographic ranges, or recovery areas, for each of the S species. Snails detected at the sites selected for monitoring will be surveyed on an annual basis to determine population stability and persistence, and verify presence of all lifehistor. tages fora minimum of 5 years. 2. Develop andimplement habitatmanagement plans that include conservation measures to protect cold-water spring habitats occupied by Banbury Springs lanx, Bliss Rapids snail, and Utah valvata snail from further habitat degradation (i.e. diversions, pollution,development) as described in Action #1. 3. Stabilize the Snake River Plain aquifer to protect discharge atlevels necessary to conserve the listed species cold-water spring habitats. 4. Evaluate the effects of non-native flora andfauna on listed species in the Snake River from Ci. Strike Dam to AmericanFalls ~ ii : Estimated Cost of Recovery: Partial costs (in $1 ,000’s ) are estimated for some of the tasks/needs for the first 5 Federal fiscal years (FY) beginning in 1995; each fiscal year begins on October 1. Priority Pnority Priority Year 1 2 3 Total 1995 217 132 45 394 1996 280 2 43 325 1997 175 2 92 269 1998 15 2 96 113 1999 0 2 60 62 687 140 336 1163 Date of Recovery: Delisting could be initiated within 10 years ifrecovery criteria have been met. iii r LIST OF SYMBOLS AND ABBREVIATIONS ac-ft acre-feet ACEC Area of Critical Environmental Concern ACP Agricultural Conservation Program Act Endangered Species Act Agreement Joint Agreement Regarding Fish and Wildlife Studies Ag Plan Agricultural Pollution Abatement Plan AWQAC Agricultural Water Quality Advisory Committee BLM U.S. Bureau of Land Management BMP best management practices BPA U.S. Bonneville Power Administration BR U.S. Bureau of Reclamation C centigrade cfs cubic feet per second cm centimeter cm/s centimeters/second COE U.S. Army Corps of Engineers Council NorthwestPower Planning Council CWA Federal CleanWater Act DEQ Idaho Department of Health andWelfare - Division of Environmental Quality EPA U.S. Environmental Protection Agency ES Ecological Services, U.S.Fish andWildlife Service FERC U.S. Federal Energy Regulatory Commission FSA Farm Services Agency ft feet ft2 square feet ft/s feet/second ft/mi feet/mile FY Fiscal Year IDA Idaho Department of Agriculture ]DFG Idaho Department of Fish and Game IDHW Idaho Department of Health and Welfare ]DWR Idaho Departmentof WaterResources IWRB Idaho WaterResource Board in inch ll’C Idaho Power Company ISU Idaho State University, Department of Biological Sciences IWRRI Idaho WaterResources Research Institute kg lcilogram km kilometer lbs pounds m meter square meter in3 cubic meters m3/s cubic meters persecond in/km meter/kilometer iv mg/i milligrams/liter mi mile flu square miles mm millimeter NWQA National WaterQuality Assessment Program NfvlFS U.S.