Yamaguchi_Suppl. Table 1 List of genes deregulated in HDAC1 KO vs WT Probe Set name fold change 1423327_at RIKEN cDNA 4930517K11 gene 201,6 1426231_at vitrin 33,4 1416368_at glutathione S-transferase, alpha 4 23,2 1435436_at Transcribed locus 20,1 1456379_x_at delta/notch-like EGF-related receptor 15,2 1418175_at vitamin D receptor 14,7 1455642_a_at tetraspanin 17 14,1 1436448_a_at prostaglandin-endoperoxide synthase 1 13,7 1423414_at prostaglandin-endoperoxide synthase 1 12,3 1416710_at transmembrane protein 35 11,8 1454780_at UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 10,9 1439231_at gb:BG228852 /DB_XREF=gi:12716356 /DB_XREF=ux62e05.x1 /CLONE=IMAGE:3514856 /FEA=EST /CNT=9 /TID=Mm.133155.1 /TIER=Stack10,3 /STK=8 /UG=Mm.133155 /UG_TITLE=ESTs 1416072_at CD34 antigen 10,2 1433529_at RIKEN cDNA E430002G05 gene 9,2 1416203_at aquaporin 1 8,6 1418949_at growth differentiation factor 15 8,3 1435955_at sialic acid binding Ig-like lectin 10 8,2 1416326_at cysteine-rich protein 1 (intestinal) 8,2 1448700_at G0/G1 switch gene 2 8,1 1416271_at PERP, TP53 apoptosis effector 8,0 1418176_at vitamin D receptor 7,8 1439789_at gb:BQ177189 /DB_XREF=gi:20352681 /DB_XREF=UI-M-DJ2-bwa-j-16-0-UI.s1 /CLONE=UI-M-DJ2-bwa-j-16-0-UI /FEA=EST /CNT=16 /TID=7,4 Mm.34073.1 /TIER=ConsEnd /STK=6 /UG=Mm.34073 /UG_TITLE=ESTs 1423627_at NAD(P)H dehydrogenase, quinone 1 7,3 1442174_at tetraspanin 18 7,3 1435945_a_at potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 6,9 1439362_at Transcribed locus 6,7 1448754_at retinol binding protein 1, cellular 6,5 1418496_at forkhead box A1 6,5 1418086_at protein phosphatase 1, regulatory (inhibitor) subunit 14A 6,5 1439794_at Netrin 4 (Ntn4), mRNA 6,5 1441885_s_at Transcribed locus 6,4 1421571_a_at lymphocyte antigen 6 complex, locus C 6,3 1417933_at insulin-like growth factor binding protein 6 6,3 1458396_at Structure specific recognition protein 1 (Ssrp1), mRNA 6,3 1438672_at Parvin, beta (Parvb), mRNA 6,3 1429905_at RIKEN cDNA 3110009O07 gene 6,3 1423671_at delta/notch-like EGF-related receptor 6,2 1460667_at cDNA sequence U90926 6,2 1421228_at chemokine (C-C motif) ligand 7 6,0 1444139_at DNA-damage-inducible transcript 4-like 6,0 1428891_at RIKEN cDNA 9130213B05 gene 6,0 1416302_at early B-cell factor 1 5,9 1424826_s_at metastasis suppressor 1 5,7 1416301_a_at early B-cell factor 1 5,7 1424733_at purinergic receptor P2Y, G-protein coupled, 14 5,6 1439332_at DNA-damage-inducible transcript 4-like 5,6 1448293_at early B-cell factor 1 5,6 1455869_at Calcium/calmodulin-dependent protein kinase II, beta (Camk2b), mRNA 5,6 1424214_at RIKEN cDNA 9130213B05 gene 5,2 1451751_at DNA-damage-inducible transcript 4-like 5,1 1435796_at RIKEN cDNA 4933413A10 gene 5,1 1437453_s_at proprotein convertase subtilisin/kexin type 9 5,0 1417936_at chemokine (C-C motif) ligand 9 5,0 1430762_at RIKEN cDNA 4833427G06 gene 5,0 1450783_at interferon-induced protein with tetratricopeptide repeats 1 4,9 1422606_at C1q and tumor necrosis factor related protein 3 4,7 1419324_at LIM homeobox protein 9 4,6 1431213_a_at RIKEN cDNA 1300007C21 gene, similar to Retrovirus-related POL polyprotein (Endonuclease), similar to Retrovirus-related Pol polyprotein4,6 (Endonuclease) 1435275_at cytochrome c oxidase subunit VIb polypeptide 2 4,6 1447845_s_at vanin 1 4,5 1435830_a_at RIKEN cDNA 5430435G22 gene 4,4 1419132_at toll-like receptor 2 4,4 1444723_at RIKEN cDNA 6530418L21 gene 4,4 1449408_at junction adhesion molecule 2 4,4 1417185_at lymphocyte antigen 6 complex, locus A 4,4 1429359_s_at RNA binding protein gene with multiple splicing 4,3 1460555_at RIKEN cDNA 6330500D04 gene 4,3 1428767_at gasdermin domain containing 1 4,3 1457644_s_at chemokine (C-X-C motif) ligand 1 4,3 1448898_at chemokine (C-C motif) ligand 9 4,3 1456878_at expressed sequence AI646023 4,2 1426981_at proprotein convertase subtilisin/kexin type 6 4,2 1435990_at a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 4,1 1442257_at 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820438B06 product:unclassifiable,4,1 full insert sequence 1424334_at tetraspanin 17 4,0 1449559_at homeo box, msh-like 2 3,9 1419209_at chemokine (C-X-C motif) ligand 1 3,8 1450482_a_at paired-like homeodomain transcription factor 2 3,8 1425652_s_at RNA binding protein gene with multiple splicing 3,8 1416295_a_at interleukin 2 receptor, gamma chain 3,7 1456210_at RIKEN cDNA 5430407P10 gene 3,7 1450626_at mannosidase, beta A, lysosomal 3,7 1432826_a_at CD80 antigen 3,7 1424797_a_at paired-like homeodomain transcription factor 2 3,7 1451236_at RAS-like, estrogen-regulated, growth-inhibitor 3,7 1434036_at metastasis suppressor 1 3,6 1417311_at cysteine rich protein 2 3,6 1451344_at cDNA sequence BC025600 3,6 1450761_s_at regulating synaptic membrane exocytosis 2 3,6 1436544_at ATPase, Class V, type 10D 3,6 1416411_at glutathione S-transferase, mu 2 3,6 1452388_at heat shock protein 1A 3,6 1424987_at RIKEN cDNA 5430435G22 gene 3,6 1436515_at RIKEN cDNA E030004N02 gene 3,5 1455304_at DNA segment, Chr 9, ERATO Doi 414, expressed 3,5 1421217_a_at lectin, galactose binding, soluble 9 3,5 1448272_at B-cell translocation gene 2, anti-proliferative 3,5 1450004_at thymic stromal lymphopoietin 3,5 1443612_at Transcribed locus 3,5 1434450_s_at adrenergic receptor kinase, beta 2 3,5 1458882_at serine (or cysteine) peptdiase inhibitor, clade B, member 8 3,5 1422033_a_at ciliary neurotrophic factor 3,4 1432517_a_at nicotinamide N-methyltransferase 3,4 1447329_at gb:AI506532 /DB_XREF=gi:4404383 /DB_XREF=vn38f09.x1 /CLONE=IMAGE:1023497 /FEA=EST /CNT=2 /TID=Mm.139387.1 /TIER=ConsEnd3,4 /STK=2 /UG=Mm.139387 /UG_TITLE=ESTs, Weakly similar to GNMSLL retrovirus-rel ... 1424890_at basonuclin 1 3,4 1437095_at tetraspanin 18 3,4 1451687_a_at transcription factor 2 3,4 1418890_a_at RAB3D, member RAS oncogene family 3,4 1435943_at dipeptidase 1 (renal) 3,4 1418486_at vanin 1 3,4 1421041_s_at glutathione S-transferase, alpha 1 (Ya), glutathione S-transferase, alpha 2 (Yc2) 3,4 1417995_at protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 3,3 1451601_a_at cDNA sequence BC011467 3,3 1449022_at nestin 3,3 1417358_s_at sorbin and SH3 domain containing 1 3,3 1427126_at heat shock protein 1A 3,2 1441165_s_at calsyntenin 2 3,2 1434279_at gb:BI076485 /DB_XREF=gi:14515142 /DB_XREF=G0109C05-3 /CLONE=G0109C05 /FEA=EST /CNT=386 /TID=Mm.30502.2 /TIER=Stack3,2 /STK=48 /UG=Mm.30502 /LL=13803 /UG_GENE=Enc1 /UG_TITLE=ectodermal-neural cortex 1 1418713_at pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 3,2 1418979_at RIKEN cDNA 9030611N15 gene 3,2 1422155_at histone 2, H3c2 3,2 1426858_at inhibin beta-B 3,2 1429053_at RIKEN cDNA 1110012J17 gene 3,1 1425093_at purinergic receptor P2X, ligand-gated ion channel, 3 3,1 1436470_at regulating synaptic membrane exocytosis 2 3,1 1423693_at elastase 1, pancreatic 3,1 1438989_s_at RIKEN cDNA B130021B11 gene 3,0 1460242_at decay accelerating factor 1 3,0 1437385_at collagen and calcium binding EGF domains 1 3,0 1435750_at GTP cyclohydrolase I feedback regulator 3,0 1441971_at Transcribed locus 3,0 1422340_a_at actin, gamma 2, smooth muscle, enteric 3,0 1452318_a_at heat shock protein 1A 3,0 1443749_x_at solute carrier family 1 (glial high affinity glutamate transporter), member 3 3,0 1423606_at periostin, osteoblast specific factor 3,0 1427127_x_at heat shock protein 1A 3,0 1437161_x_at RNA binding protein gene with multiple splicing 2,9 1422567_at niban protein 2,9 1450512_at netrin 4 2,9 1418749_at cDNA sequence BC00398 2,9 1417963_at phospholipid transfer protein 2,9 1427735_a_at actin, alpha 1, skeletal muscle 2,9 1455404_at junctophilin 2 2,9 1428067_at RAS-like, family 12 2,9 1419458_at Rho-guanine nucleotide exchange factor 2,9 1418726_a_at troponin T2, cardiac 2,9 1417732_at annexin A8 2,9 1436990_s_at Nur77 downstream gene 2 2,9 1452366_at RIKEN cDNA 4732435N03 gene 2,9 1425357_a_at gremlin 1 2,9 1426340_at solute carrier family 1 (glial high affinity glutamate transporter), member 3 2,9 1440975_at RIKEN cDNA 1810057P16 gene 2,9 1456643_at RIKEN cDNA 9230114K14 gene 2,9 1429184_at GTPase, very large interferon inducible 1 2,8 1419674_a_at dipeptidase 1 (renal) 2,8 1418237_s_at procollagen, type XVIII, alpha 1 2,8 1452031_at solute carrier family 1 (glial high affinity glutamate transporter), member 3 2,8 1437558_at RIKEN cDNA B130021B11 gene 2,8 1426071_at TGF-beta1-induced anti-apoptotic factor 2 2,8 1419435_at aldehyde oxidase 1 2,8 1415855_at kit ligand 2,8 1424638_at cyclin-dependent kinase inhibitor 1A (P21) 2,8 1448788_at Cd200 antigen 2,8 1422444_at integrin alpha 6 2,8 1419739_at tropomyosin 2, beta 2,8 1426341_at solute carrier family 1 (glial high affinity glutamate transporter), member 3 2,8 1443870_at ATP-binding cassette, sub-family C (CFTR/MRP), member 4 2,8 1434939_at forkhead box F1a 2,7 1436999_at expressed sequence AL024069 2,7 1440085_at ectodysplasin A2 isoform receptor 2,7 1422445_at integrin alpha 6 2,7 1429767_at RIKEN cDNA 2810013P06 gene 2,7 1434728_at gb:BM220576 /DB_XREF=gi:17780712 /DB_XREF=C0942G02-3 /CLONE=C0942G02 /FEA=EST /CNT=29 /TID=Mm.32184.1 /TIER=Stack2,7 /STK=26 /UG=Mm.32184 /UG_TITLE=ESTs 1435349_at neuropilin 2 2,7 1457058_at a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 2,7 1421965_s_at Notch gene homolog 3 (Drosophila) 2,7 1419457_at Rho-guanine nucleotide exchange