Curriculum vita Baolin Wu June 2014 Contact Information Address Division of Biostatistics School of Public Health, University of Minnesota A460 Mayo Building, MMC 303 420 Delaware St SE Minneapolis, MN 55455 Phone (612) 624-0647 Fax (612) 626-0660 Email [email protected] Education 1999-2004 Ph.D. in Biostatistics, Yale University, New Haven, CT. 1995-1999 B.S. in Probability and Statistics, Peking University, Beijing, P.R.China. Positions 2010-Present Tenured Associate Professor, Division of Biostatistics, School of Public Health, University of Minnesota 2004-2010 Tenure-track Assistant Professor, Division of Biostatistics, School of Public Health, University of Minnesota Student Advising • Wei Zhang (ongoing CS PhD): co-advisor. • Xiting Cao (PhD): graduated November 2011 and now worked for Merck. • Ran Li (PhD): graduated December 2011 and now worked for Abbott. • Sang Mee Lee (PhD): graduated July 2011 and now a Research Assistant Professor of Biostatistics at Department of Health Studies, University of Chicago. Won the student paper award at the 2010 ENAR meeting. • Fang Liu (MS): graduated May 2007 and now worked for UnitedHealth. • Jiaqi Yang (MS): graduated May 2008 and now worked for Schlumberger-Doll Research. 1 Professional Service Referee for journals Annals of Applied Statistics; Applied Statistics; Behavior Genetics; Bioinformatics; Biomet- rical Journal; Biometrics; Biometrika; Biostatistics; BMC Bioinformatics; Communications in Statistics - Simulation and Computation; Computational Statistics and Data Analysis; Genome Biology; IEEE/ACM Transactions on Computational Biology and Bioinformatics; Journal of Agricultural, Biological, and Environmental Statistics; Journal of Applied Statis- tics; Journal of Biological Systems; Journal of Biomedicine and Biotechnology; Journal of the American Statistical Association; Nucleic Acids Research; Physiological Genomics; Sta- tistical Applications in Genetics and Molecular Biology; Statistics in Biopharmaceutical Research; Statistics in Medicine; Statistica Sinica; Technometrics; Test. Grant review 1. NCI study section for RFA CA 07-005 \Advanced Proteomic Platforms and Compu- tational Sciences for the NCI Clinical Proteomic Technologies Initiative". 2006. 2. Review grant applications for Italian Ministry of Health in association with NIH. 2009. 3. Review grant applications for NIH. 2009-2010. UofM Services and Committees 1. Exam Committee, 2009- (PhD exam chair for 2012-). 2. Admission Committee, 2004-2005. 3. Seminar Committee, 2004 - 2010. 4. Faculty Search Committee, 2005 - 2006. 2007 - 2010. 5. School of Public Health APT Ad Hoc Committee, 2009. 6. School of Public Health Research Committee, 2008 - 2010. 2 Research Articles 1. Zhao H, Wu B, Sun N (2003). DNA-protein binding and gene expression patterns. In Goldstein DR(ed). Science and Statistics: A Festschrift for Terry Speed. IMS Lecture Notes-Monograph Series, 40: 259-274. 2. Wu B, Abbott T, Fishman D, Mcmurrary W, Mor G, Stone K, Ward D, Williams K, Zhao H (2003). Comparison of statistical methods for classification of ovarian cancer using a proteomics dataset. Bioinformatics, 19: 1636-1643. 3. Goh C, Lan N, Douglas S, Wu B, Bertone P, Echols N, Milburn D, Montelione G, Zhao H, Gerstein M (2003). Mining the structural genomics pipeline: Identification and analysis of protein properties that affect high-throughput experimental analysis. Journal of Molecular Biology, 336: 115-30. 4. Lai Y, Wu B, Chen L, and Zhao H (2004). Statistical method for identifying differ- ential gene-gene coexpression patterns. Bioinformatics, 20: 3146-3155. 5. Lin N, Wu B, Jansen R, Gerstein M, Zhao H (2004). Information assessment on predicting protein-protein interactions. BMC Bioinformatics, 5:154. 6. Carriero N, Osier M, Cheung K, Miller P, Gerstein M, Zhao H, Wu B, Rifkin S, Chang J, Zhang H, White K, Williams K, Schultz M (2005). A \high productivity/low maintenance" approach to high performance computation for biomedicine: Four case studies. Journal of American Medical Informatics Association, 12: 90-98. 7. Gulcicek E, Colangelo C, McMurray W, Stone K, Wu B, Wu T, Spratt H, Kurosky A, Zhao H, Williams K (2005). Proteomics and the analysis of proteomic data. In Davison D, Page R, Petsko G, Stormo G, and Stein L(ed). Current Protocols in Bioinformatics, John Wiley and Sons, Indianapolis, IN. 8. Huang T, Wu B, Lizardi P, Zhao H (2005). Detection of DNA copy number alterations using penalized least squares regression. Bioinformatics, 21: 3811-3817. 9. Wu B (2005). Differential gene expression detection using penalized linear regression model: the improved SAM statistics. Bioinformatics, 21: 1565-1571. 10. Yu W, Wu B, Huang T, Li X, Williams K, Zhao H (2006). Statistical methods in proteomics. In Pham H(ed). Springer Handbook of Engineering Statistics, Springer- Verlag, London, UK. 11. Yu W, Wu B, Liu J, Li X, Williams K, Zhao H (2006). MALDI-MS data analysis for disease biomarker discovery. Methods in Molecular Biology, 328: 199-216. 12. Yu W, Wu B, Lin N, Stone K, Williams K, Zhao H (2006). Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Computational Biology and Chemistry, 30: 27-38. 3 13. Yu W, Li X, Liu J, Wu B, Williams K and Zhao H (2006). Multiple peak alignment in sequential data analysis: A scale-space based approach. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3: 208-219. 14. Wu B, Abbott T, Fishman D, McMurray W, Mor G, Stone K, Ward D, Williams K, Zhao H (2006). Ovarian cancer classification based on mass spectrometry analysis of sera. Cancer Informatics, 2: 123-132. 15. Wu B, Guan Z, and Zhao H (2006). Parametric and nonparametric FDR estimation revisited. Biometrics, 62: 735-744. 16. Wu B (2006). Differential gene expression detection and sample classification using penalized linear regression models. Bioinformatics, 22: 472-476. 17. Wu B, Liu N, Zhao H (2006). PSMIX: an R package for population structure inference via maximum likelihood method. BMC Bioinformatics, 7:317. 18. Oetting W, Wu B, Lande J, Brott M and Matas A (2006). Identification of DNA variants and genetic profiling of kidney allograft recipients using a custom SNP chip. Transplantation, 82(1 Suppl 2):911. 19. Whitson B, D'Cunha J, Hoang C, Wu B, Ikramuddin S, Buchwald H, Panoskaltsis- Mortari A, Kratzke R, Miller J and Maddaus M (2007). Comparison of minimally invasive vs open roux-en-y gastric bypass on immune effector cell function. Journal of the American College of Surgeons, 205(3 Suppl 1):S13. 20. Li N, Wu B, Wei P, Xie B, Xie Y, Xiao G and Pan W (2007). Functional group based linkage analysis of gene expression trait loci. BMC Proceedings 2007, 1(Suppl 1):S117. 21. Wu B (2007). Cancer outlier differential gene expression detection. Biostatistics, 8: 566-575. (To 50 most cited papers in Biostatistics up to April, 2012) 22. Liu F and Wu B (2007). Multi-group cancer outlier differential gene expression de- tection. Computational Biology and Chemistry, 31: 65-71. 23. Liu J, Yu W, Wu B and Zhao H (2008). Bayesian mass spectra peak alignment from mass charge ratios. Cancer Informatics, 4, 217-241. 24. Chen W, Kumar A, Hudson W, Li Q, Wu B, Staggs R, Lund E, Sam T and Kersey J (2008). Malignant transformation initiated by Mll-AF9: Gene dosage and critical target cells. Cancer Cell, 13, 432-440. 25. Guan Z, Wu B, and Zhao H (2008). Application of Bernstein polynomial in the estimation of false-discovery-rate. Statistica Sinica, 18: 905-923. 26. Fu S, Kodl M, Joseph A, Hatsukami D, Johnson E, Breslau N, Wu B, Bierut L (2008). Racial/Ethnic Disparities in the Use of Nicotine Replacement Therapy and Quit Ratios in Lifetime Smokers Aged 25-44. Cancer Epidemiology, Biomarkers & Prevention, 17: 1640-1647. 4 27. John C, Bangirana P, Byarugaba J, Opika-Opoka R, Idro R, Jurek A, Wu B, Boivin M (2008). Long-term cognitive impairment in children with cerebral malaria. Pediatrics, 122: e92-e99. 28. Whitson B, D'Cunha J, Andrade R, Kelly R, Groth S, Wu B, Miller J, Kratzke R and Maddaus M (2008). Thoracoscopic vs. thoracotomy approaches to lobectomy: differential impairment of cellular immunity. Annals of Thoracic Surgery, 86: 1735- 1744. 29. Hwang T, Sicotte H, Tian Z, Wu B, Kocher J, Wigle D, Kumar V and Kuang R (2008). Robust and efficient identification of biomarkers by classifying features on graphs. Bioinformatics, 24: 2023-2029. 30. Whitson B, DCunha J, Hoang C, Wu B, Ikramuddin S, Buchwald H, Panoskaltsis- Mortari A, Kratzke R, Miller J and Maddaus M (2009). Minimally invasive versus open roux-en-y gastric bypass: impact on immune effector cells. Surgery for Obesity and Related Diseases, 5: 181-193. 31. Kumar A, Li Q, Hudson W, Chen W, Sam T, Yao Q, Lund E, Wu B, Kowal B and Kersey J (2009). A role for MEIS1 in MLL-fusion gene leukemia. Blood, 113: 1756- 1758. 32. de Jong E, Xie H, Onsongo G, Stone M, Chen X, Kooren J, Refsland W, Griffin R, Ondrey F, Wu B, Le C, Rhodus N, Carlis J and Griffin T (2010). Quantitative Pro- teomics Reveals Myosin and Actin as Promising Saliva Biomarkers for Distinguishing Pre-Malignant and Malignant Oral Lesions. PLoS ONE, 5(6): e1114. 33. Kumar A, Sarver A, Wu B and Kersey J (2010). Meis1 maintains stemness signature in MLL-AF9 leukemia. Blood, 115: 3642-3643. 34. Canales, B.K., L. Anderson, L. Higgins, K. Ensrud-Bowlin, K.P. Roberts, Wu B, I.W. Kim, and M. Monga (2010). Proteome of Human Calcium Kidney Stones. Urology, 76(4): 1017.e13{1017.e20. 35. Onsongo, G., M.D. Stone, S.K. Van Riper, J. Chilton, Wu B, L. Higgins, T.C. Lund, J.V. Carlis, and T.J. Griffin (2010). LTQ-iQuant: A Freely Available Software Pipeline for Automated and Accurate Protein Quantification of Isobaric Tagged Peptide Data from LTQ Instruments. Proteomics, 10(19): 3533{3538. 36. Zhang W, Hwang B, Wu B, and Kuang R (2010).