Table S1. Gene List Genes Chr Genes Chr Genes Chr Genes Chr SEPT9 17 EIF2AK3 2 MAPK14 6 RASSF5 1 AAK1 2 EIF2AK4 15 MAPK15 8 RAVER2 1 AATK 17 EIF2B5 3 MAPK3 16 RAX2 19 ABCA1 9 EIF3J 15 MAPK4 18 RB1 13 ABL1 9 EIF4A2 3 MAPK6 15 RBBP4 1 ABL2 1 EIF4B 12 MAPK7 17 RBBP5 1 ACTR2 2 EIF4E 4 MAPK8 10 RBBP8 18 ACVR1 2 EIF4E1B 5 MAPK8IP1 11 RBL1 20 ACVR1B 12 EIF4E2 2 MAPK8IP2 22 RBL2 16 ACVR1C 2 EIF4EBP1 8 MAPK8IP3 16 RBPJ 4 ACVR2A 2 ELF3 1 MAPK9 5 RBPJL 20 ACVR2B 3 ELF4 X MAPKAPK2 1 RBX1 22 ACVRL1 12 ELK1 X MAPKAPK3 3 RCHY1 4 ADAM17 2 ELK3 12 MAPKAPK5 12 REEP5 5 ADAM29 4 ELK4 1 MAPRE1 20 REL 2 ADAMTS15 11 EML4 2 MAPRE3 2 RELA 11 ADAMTS18 16 ENDOD1 11 MAPT 17 RELB 19 ADAMTSL3 15 ENDOG 9 MARK1 1 RET 10 ADCK1 14 EP300 22 MARK2 11 RFC1 4 ADCK2 7 EPAS1 2 MARK3 14 RFC2 7 ADCK3 1 EPCAM 2 MARK4 19 RFC3 13 ADCK4 19 EPHA1 7 MAST1 19 RFC4 3 ADCK5 8 EPHA10 1 MAST2 1 RFC5 12 ADORA1 1 EPHA2 1 MAST3 19 RFNG 17 ADRBK1 11 EPHA3 3 MAST4 5 RFWD2 1 ADRBK2 22 EPHA4 2 MASTL 10 RFX2 19 AGK 7 EPHA5 4 MATK 19 RHEB 7 AIFM1 X EPHA6 3 MAX 14 RHO 3 AIFM2 10 EPHA7 6 MBIP 14 RHOA 3 AIM1 6 EPHA8 1 MCC 5 RHOC 1 AIMP2 7 EPHB1 3 MCF2L2 3 RHOQ 2 AIP 11 EPHB2 1 MCL1 1 RICTOR 5 AKAP4 X EPHB3 3 MCM2 3 RIOK1 6 AKT1 14 EPHB4 7 MCM3 6 RIOK2 5 AKT1S1 19 EPHB6 7 MCM4 8 RIOK3 18 AKT2 19 EPS8 12 MCM5 22 RIPK1 6 AKT3 1 ERBB2 17 MCM6 2 RIPK2 8 ALK 2 ERBB3 12 MCM7 7 RIPK3 14 ALKBH1 14 ERBB4 2 MCM8 20 RIPK4 21 ALKBH2 12 ERC2 3 MDM2 12 RMI1 9 ALKBH3 11 ERCC1 19 MDM4 1 RNASEL 1 ALMS1 2 ERCC2 19 MECOM 3 RNF213 17 ALPK1 4 ERCC3 2 MED12 X RNF220 1 ALPK2 18 ERCC4 16 MED12L 3 ROCK1 18 ALPK3 15 ERCC5 13 MEF2C 5 ROCK2 2 AMH 19 ERCC6 10 MELK 9 ROR1 1 AMHR2 12 ERCC6L X MEN1 11 ROR2 9 ANAPC1 2 EREG 4 MERTK 2 ROS1 6 ANAPC10 4 ERGIC3 20 MET 7 RPA1 17 ANAPC11 17 ERN1 17 MFSD4 1 RPA2 1 ANAPC13 3 ERN2 16 MGMT 10 RPA3 7 ANAPC16 10 ERO1L 14 MGST1 12 RPA4 X ANAPC2 9 ESCO2 8 MINK1 17 RPGR X ANAPC4 4 ESPL1 12 MITF 3 RPGRIP1 14 ANAPC5 12 ESR1 6 MKKS 20 RPGRIP1L 16 ANAPC7 12 ETFA 15 MKNK1 1 RPRM 2 ANGPTL4 19 ETS1 11 MKNK2 19 RPS6 9 ANK1 8 EVL 14 MKRN2 3 RPS6KA1 1 ANK2 4 EWSR1 22 MKS1 17 RPS6KA2 6 ANKK1 11 EXO1 1 MLH1 3 RPS6KA3 X ANKRD29 18 EXOC4 7 MLH3 14 RPS6KA4 11 APAF1 12 EXOC7 17 MLK7-AS1 2 RPS6KA5 14 APC 5 EXOG 3 MLKL 16 RPS6KA6 X APC2 19 EXT1 8 MLL 11 RPS6KB1 17 APH1A 1 EXT2 11 MLL2 12 RPS6KB2 11 APOPT1 14 EYA4 6 MLL3 7 RPS6KC1 1 APPL1 3 EZH1 17 MLL5 7 RPS6KL1 14 AR X EZH2 7 MLST8 16 RPTOR 17 ARAF X FADD 11 MMP1 11 RRAS 19 AREG 4 FAM123B X MMP2 16 RRAS2 11 AREGB 4 FAM20C 7 MMP7 11 RRM1 11 ARFRP1 20 FANCA 16 MMP9 20 RRM2 2 ARHGEF39 9 FANCC 9 MOK 14 RRM2B 8 ARID1A 1 FANCD2 3 MOS 8 RSPO1 1 ARIH2 3 FANCE 6 MPL 1 RUNX1 21 ARL13B 3 FANCF 11 MRAS 3 RUNX1T1 8 ARL4C 2 FANCG 9 MRE11A 11 RUVBL1 3 ARL6 3 FARP1 13 MSH2 2 RXRA 9 ARNT 1 FARP2 2 MSH3 5 RXRB 6 ARNT2 15 FAS 10 MSH6 2 RXRG 1 ARPC3 12 FASLG 1 MSN X RYK 3 ARPC4 3 FASN 17 MST1 3 SBK1 16 ARPC5 1 FASTK 7 MST1R 3 SBK2 19 ARRB1 11 FAT3 11 MTAP 9 SCEL 13 ARRB2 17 FBXL14 12 MTOR 1 SCYL1 11 ASAP1 8 FBXW11 5 MUC1 1 SCYL2 12 ASCC1 10 FBXW7 4 MUSK 9 SCYL3 1 ASH1L 1 FER 5 MUTYH 1 SDHB 1 ASH2L 8 FES 15 MVP 16 SDHD 11 ASPSCR1 17 FGF1 5 MXD1 2 SEC31A 4 ASXL1 20 FGF10 5 MXI1 10 SENP2 3 ATF1 12 FGF11 17 MYC 8 SERPINB5 18 ATF2 2 FGF12 3 MYCBP2 13 SERPINE1 7 ATF4 22 FGF13 X MYCL1 1 SESN1 6 ATM 11 FGF14 13 MYCN 2 SESN2 1 ATP5S 14 FGF16 X MYCNOS 2 SESN3 11 ATP8B1 18 FGF17 8 MYD88 3 SETD1A 16 ATR 3 FGF18 5 MYLK 3 SETD1B 12 ATRX X FGF19 11 MYLK2 20 SETD2 3 AURKA 20 FGF2 4 MYLK3 16 SETD3 14 AURKB 17 FGF20 8 MYLK4 6 SETD4 21 AURKC 19 FGF21 19 MYO18B 22 SETD5 3 AXIN1 16 FGF22 19 MYO3A 10 SETD6 16 AXIN2 17 FGF23 12 MYO3B 2 SETD7 4 AXL 19 FGF3 11 MYT1 20 SETD8 12 B9D1 17 FGF4 11 NBN 8 SETDB1 1 BACH1 21 FGF5 4 NCK1 3 SETDB2 13 BAD 11 FGF6 12 NCK2 2 SETMAR 3 BAG2 6 FGF7 15 NCOA4 10 SFN 1 BAI1 8 FGF8 10 NCOR1 17 SFRP1 8 BAI3 6 FGF9 13 NCOR2 12 SFRP2 4 BAIAP2 17 FGFR1 8 NCSTN 1 SFRP4 7 BAP1 3 FGFR2 10 NDC80 18 SFRP5 10 BARD1 2 FGFR3 4 NDP X SGCB 4 BAX 19 FGFR4 5 NDUFV3 21 SGK1 6 BBC3 19 FGR 1 NEDD9 6 SGK2 20 BBS2 16 FH 1 NEK1 4 SGK3 8 BBS4 15 FIGF X NEK10 3 SGOL1 3 BBS5 2 FKBP1A 20 NEK11 3 SGOL2 2 BBS7 4 FLCN 17 NEK2 1 SH2B2 7 BBS9 7 FLNA X NEK3 13 SH2D2A 1 BCKDK 16 FLNB 3 NEK4 3 SH2D7 15 BCL2 18 FLNC 7 NEK5 13 SHC1 1 BCL2L1 20 FLOT1 6 NEK6 9 SHC2 19 BCL2L11 2 FLOT2 17 NEK7 1 SHC3 9 BCL2L14 12 FLT1 13 NEK8 17 SHC4 15 BCL2L2 14 FLT3 13 NEK9 14 SHFM1 7 BCL6 3 FLT3LG 19 NEMF 14 SHH 7 BCL9 1 FLT4 5 NF1 17 SHISA5 3 BCR 22 FN1 2 NF2 22 SHOX X BDNF 11 FOS 14 NFAT5 16 SIAH1 16 BID 22 FOSL1 11 NFATC1 18 SIK1 21 BIRC2 11 FOXC1 6 NFATC2 20 SIK2 11 BIRC3 11 FOXC2 16 NFATC3 16 SIK3 11 BIRC5 17 FOXL2 3 NFATC4 14 SIN3A 15 BLK 8 FOXM1 12 NFKB1 4 SIN3B 19 BLM 15 FOXO1 13 NFKB2 10 SIX4 14 BMP1 8 FOXO3 6 NFKBIA 14 SKP1 5 BMP10 2 FOXO4 X NFKBIE 6 SKP2 5 BMP15 X FPGT-TNNI3K 1 NGF 1 SLC26A1 4 BMP2 20 FRAT1 10 NKD1 16 SLC29A1 6 BMP2K 4 FRAT2 10 NKD2 5 SLC2A1 1 BMP4 14 FRK 6 NKX2-1 14 SLC2A4 17 BMP5 6 FRZB 2 NKX3-1 8 SLK 10 BMP6 6 FST 5 NLK 17 SMAD1 4 BMP7 20 FTO 16 NODAL 10 SMAD2 18 BMP8A 1 FYB 5 NOG 17 SMAD3 15 BMP8B 1 FYN 6 NOS2 17 SMAD4 18 BMPR1A 10 FZD1 7 NOS3 7 SMAD5 5 BMPR1B 4 FZD10 12 NOSIP 19 SMAD6 15 BMPR2 2 FZD2 17 NOSTRIN 2 SMAD7 18 BMX X FZD3 8 NOTCH1 9 SMAD9 13 BOC 3 FZD4 11 NOTCH2 1 SMARCA4 19 BORA 13 FZD5 2 NOTCH2NL 1 SMARCB1 22 BRAF 7 FZD6 8 NOTCH3 19 SMARCD1 12 BRCA1 17 FZD7 2 NOTCH4 6 SMARCE1 17 BRCA2 13 FZD8 10 NPHP1 2 SMC1A X BRD2 6 FZD9 7 NPHP3 3 SMC1B 22 BRD3 9 FZR1 19 NPHP4 1 SMC3 10 BRD4 19 GAB1 4 NPM1 5 SMG1 16 BRDT 1 GABRA6 5 NPR1 1 SMO 7 BRIP1 17 GADD45A 1 NPR2 9 SMURF1 7 BRSK1 19 GADD45B 19 NR4A1 12 SMURF2 17 BRSK2 11 GADD45G 9 NRAS 1 SMYD1 2 BTC 4 GAK 4 NRBP1 2 SMYD2 1 BTK X GALNS 16 NRBP2 8 SMYD3 1 BTRC 10 GAS1 9 NRG1 8 SMYD4 17 BUB1 2 GATA1 X NRG2 5 SMYD5 2 BUB1B 15 GATA2 3 NRG3 10 SNAI1 20 BUB3 10 GATA3 10 NRG4 15 SNAI2 8 C10orf137 10 GCK 7 NSD1 5 SNRK 3 C16orf53 16 GDF5 20 NTF3 12 SNTB1 8 C8orf4 8 GDF6 8 NTF4 19 SNW1 14 C9orf96 9 GDF7 2 NTHL1 16 SNX25 4 CAB39 2 GDNF 5 NTRK1 1 SNX4 3 CAB39L 13 GLI1 12 NTRK2 9 SOCS1 16 CACYBP 1 GLI2 2 NTRK3 15 SOCS2 12 CAD 2 GLI3 7 NUAK1 12 SOCS3 17 CALM1 14 GMNN 6 NUAK2 1 SOCS4 14 CALM2 2 GMPS 3 NUF2 1 SORBS1 10 CALM3 19 GNA12 7 NUMA1 11 SOS1 2 CALML3 10 GNAQ 9 NUMB 14 SOS2 14 CALML5 10 GNAS 20 NUMBL 19 SOST 17 CALML6 1 GNG12 1 NUP98 11 SOX17 8 CAMK1 3 GPR141 7 OBSCN 1 SP1 12 CAMK1D 10 GRAP2 22 ODC1 2 SPAG5 17 CAMK1G 1 GRB10 7 OFD1 X SPAG5-AS1 17 CAMK2A 5 GRB2 17 OGG1 3 SPC24 19 CAMK2B 7 GRK1 13 OPRM1 6 SPC25 2 CAMK2D 4 GRK4 4 ORC1 1 SPEG 2 CAMK2G 10 GRK5 10 ORC2 2 SPHK1 17 CAMK4 5 GRK6 5 ORC3 6 SPHK2 19 CAMKK1 17 GRK7 3 ORC4 2 SPI1 11 CAMKK2 12 GSG2 17 ORC5 7 SPINK1 5 CAMKV 3 GSK3A 19 ORC6 16 SPINK7 5 CAMP 3 GSK3B 3 OSR1 2 SPRED1 15 CAPG 2 GSTP1 11 OXSR1 3 SPTBN2 11 CAPN1 11 GSX2 4 P2RX7 12 SRC 20 CAPN2 1 GTSE1 22 PAK1 11 SREBF1 17 CARD9 9 GUCY1A2 11 PAK2 3 SRF 6 CARM1 19 GUCY2C 12 PAK3 X SRM 1 CARS 11 GUCY2D 17 PAK4 19 SRMS 20 CASK X GUCY2F X PAK6 15 SRPK1 6 CASP1 11 GYS1 19 PAK7 20 SRPK2 7 CASP10 2 GYS2 12 PALB2 16 SRPK3 X CASP2 7 H2AFX 11 PAPD5 16 SRSF6 20 CASP3 4 H2AFY2 10 PAPD7 5 SSBP1 7 CASP4 11 HABP4 9 PARD3 10 SSBP2 5 CASP5 11 HAPLN1 5 PARD6A 16 SSH1 12 CASP6 4 HAT1 2 PARK2 6 SSH2 17 CASP7 10 HAUS3 4 PARK7 1 SSSCA1 11 CASP8 2 HBEGF 5 PARP1 1 SSTR1 14 CASP9 1 HBXIP 1 PARP10 8 SSTR2 17 CBL 11 HCK 20 PARP11 12 SSTR3 22 CBLB 3 HDAC1 1 PARP12 7 SSTR4 20 CBLC 19 HDAC10 22 PARP14 3 SSTR5 16 CCBE1 18 HDAC11 3 PARP15 3 ST13 22 CCDC6 10 HDAC2 6 PARP16 15 STAG1 3 CCDC99 5 HDAC3 5 PARP3 3 STAG2 X CCNA1 13 HDAC4 2 PARP8 5 STAM 10 CCNA2 4 HDAC5 17 PARP9 3 STAT1 2 CCNB1 5 HDAC6 X PASK 2 STAT3 17 CCNB2 15 HDAC7 12 PAX8 2 STAT5A 17 CCNB3 X HDAC8 X PBK 8 STAT5B 17 CCND1 11 HDAC9 7 PBRM1 3 STAT6 12 CCND2 12 HES1 3 PCBD1 10 STEAP3 2 CCND3 6 HES5 1 PCK1 20 STK10 5 CCNE1 19 HGF 7 PCK2 14 STK11 19 CCNE2 8 HHIP 4 PCNA 20 STK16 2 CCNG1 5 HIF1A 14 PDE3A 12 STK17A 7 CCNG2 4 HIF1AN 10 PDE3B 11 STK17B 2 CCNH 5 HIF3A 19 PDE4D 5 STK19 6 CCR3 3 HIPK1 1 PDGFA 7 STK24 13 CCR7 17 HIPK2 7 PDGFB 22 STK25 2 CD109 6 HIPK3 11 PDGFRA 4 STK3 8 CD14 5 HIPK4 19 PDGFRB 5 STK31 7 CD248 11 HIST1H1B 6 PDGFRL 8 STK32A 5 CD40 20 HK1 10 PDIK1L 1 STK32B 4 CD47 3 HK2 2 PDK1 2 STK32C 10 CD82 11 HK3 5 PDK2 17 STK33 11 CDC14A 1 HNF1A 12 PDK3 X STK35 20 CDC14B 9 HNF1B 17 PDK4 7 STK36 2 CDC16 13 HNRNPH2 X PDPK1 16 STK38 6 CDC20 1 HRAS 11 PERP 6 STK38L 12 CDC23 5 HSF4 16 PGF 14 STK39 2 CDC25A 3 HSP90AA1 14 PGPEP1 19 STK4 20 CDC25B 20 HSP90AB1 6 PHF15 5 STK40 1 CDC25C 5 HSP90B1 12 PHF16 X STMN1 1 CDC26 9 HSPA1A 6 PHF17 4 STOML3 13 CDC27 17 HSPA1B 6 PHF2 9 STRADA 17 CDC42 1 HSPA1L 6 PHF8 X STRADB 2 CDC42BPA 1 HSPA2 14 PHIP 6 STYK1 12 CDC42BPB 14 HSPA6 1 PHKA1 X SUFU 10 CDC42BPG 11 HSPA8 11 PHKA2 X SUV39H1 X CDC45 22 HSPB1 7 PHKB 16 SUV39H2 10 CDC6 17 HSPB8 12 PHKG1 7 SUV420H1 11 CDC7 1 HUNK 21 PHKG2 16 SUV420H2 19 CDC73 1 ICAM1 19 PHLDB2 3 SYK 9 CDCA8 1 ICAM2 17 PHOX2A 11 SYMPK 19 CDH1 16 ICAM3 19 PHOX2B 4 TAB1 22 CDH20 18 ICAM4 19 PI4K2A 10 TAB2 6 CDH3 16 ICK 6 PI4K2B 4 TAF1 X CDK1 10 ID1 20 PI4KA 22 TAF1L 9 CDK10 16 ID2 2 PI4KB 1 TAOK1 17 CDK11A 1 ID3 1 PIAS1 15 TAOK2 16 CDK12 17 ID4 6 PIAS2 18 TAOK3 12 CDK13 7 IDH1 2 PIAS3 1 TBCK 4 CDK14 7 IDH2 15 PIAS4 19 TBK1 12 CDK15 2 IDUA 4 PIDD 11 TBL1X X CDK16 X IFNG 12 PIK3C2A 11 TBL1XR1 3 CDK17 12 IFT172 2 PIK3C2B 1 TBL1Y Y CDK18 1 IFT57 3 PIK3C2G 12 TBX22 X CDK19 6 IFT81 12 PIK3C3 18 TBX3 12 CDK2 12 IFT88 13 PIK3CA 3 TCEB1 8 CDK20 9 IGF1 12 PIK3CB 3 TCEB2 16 CDK4 12 IGF1R 15 PIK3CD 1 TCEB3 1 CDK5 7 IGF2 11 PIK3CG 7 TCF3 19 CDK6 7 IGF2R 6 PIK3R1 5 TCF4 18 CDK7 5 IGFBP1 7 PIK3R2 19 TCF7 5 CDK8 13 IGFBP2 2 PIK3R3 1 TCF7L1 2 CDK9 9 IGFBP3 7 PIK3R4 3 TCF7L2 10 CDKL1 14 IGFBP4 17 PIK3R5 17 TEC 4 CDKL2 4 IGFBP5 2 PIKFYVE 2 TECTA 11 CDKL3 5 IHH 2 PIM1 6 TEK 9 CDKL4 2 IKBKAP 9 PIM2 X TEN1 17 CDKL5 X IKBKB 8 PIM3 22 TESK1 9 CDKN1A 6 IKBKE 1 PIN4 X TESK2