Dr. Amal Mahmoud Salem's CV

FACULTY FULL NAME AMAL MAHMOUD HUSSEIN SALEM POSITION Professor of Bioinformatics and Molecular Virology Personal Data Nationality |Egyptian Date of Birth |12/1/1968 Department |Biology Official Email | [email protected] Language Proficiency Language Arabic English French <ul style="display: flex;"><li style="flex:1">Read </li><li style="flex:1">Write </li><li style="flex:1">Speak </li></ul>Excellent Excellent Excellent Excellent Excellent Good Excellent Excellent Very good Academic Qualifications (Beginning with the most recent) Date 1990 1994 2001 Academic Degree BSc MSc PhD Place of Issue Cairo University Cairo University-ORSTOM Cairo University-CIRAD Address Egypt Egypt-France Egypt-France PhD, Master or Fellowship Research Title: (Academic Honors or Distinctions) <ul style="display: flex;"><li style="flex:1">PhD </li><li style="flex:1">Biological and molecular characteristics of maize yellow stripe virus and its relationship with the </li></ul>leafhopper vector <ul style="display: flex;"><li style="flex:1">Master </li><li style="flex:1">Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt </li></ul>Virus characterization and diagnosis, ORSTOM (Egypt-French project) Molecular characterization and Bioinformatics analysis of MYSV (CIRAD Montpellier, France) Bioinformatics analysis of CTV and its population structure (University of Davis-California, USA) Fellowship Fellowship Fellowship Professional Record: (Beginning with the most recent) <ul style="display: flex;"><li style="flex:1">Job Rank Place and Address of Work </li><li style="flex:1">Date </li></ul><ul style="display: flex;"><li style="flex:1">25-9-2019 </li><li style="flex:1">Professor </li><li style="flex:1">Imam Abdulrahman Bin Faisal </li></ul>Univ. Saudi Arabia Associate trainer certified by IBCT Associate professor 19-9-2018 <ul style="display: flex;"><li style="flex:1">3-1-2017 </li><li style="flex:1">Imam Abdulrahman Bin Faisal </li></ul>Univ. Saudi Arabia Head of Bioinformatics Dept. Director manger GEBRI-Sadat Univ. Alkhwarizmi Center for Bioinformatics, Egypt Egypt Egypt 2015-2016 2013 1Associate professor Assistant professor Lecturer Post-Doc fellow Assistant lecturer GEBRI-Sadat Univ. GEBRI-Sadat Univ. GEBRI-Sadat Univ. UC-Davis Plant protection ins. Ministry of agric. Egypt Egypt Egypt USA 2012 2005 2002 2001 <ul style="display: flex;"><li style="flex:1">1998 </li><li style="flex:1">Egypt </li></ul>PhD fellowship MSc fellowship CIRAD-Montpellier French-Egyptian project (ORSTOM) France Egypt 1995 1991 Administrative Positions Held: (Beginning with the most recent) Administrative Position Head of Bioinformatics Dept. Director manger <ul style="display: flex;"><li style="flex:1">Office </li><li style="flex:1">Date </li></ul>2015 2013 2017 GEBRI-Sadat Univ., Egypt Alkhwarizmi Center for Bioinformatics, Egypt Dept. Biology, College of Science, Imam Abdulrahman Bin Faisal Univ., KSA Head, community service committee <ul style="display: flex;"><li style="flex:1">Head, administrative system committee </li><li style="flex:1">GEBRI-Sadat Univ., Egypt </li><li style="flex:1">2015-2016 </li></ul>Scientific Achievements Refereed Scientific Research Papers Accepted for Publication Published Refereed Scientific Researches (In Chronological Order Beginning with the Most Recent) 1. Zidan, A. M., Saad, E. A., Ibrahim, N. E., Mahmoud, A., Hashem, M. H., Hemeida, A. A. (2020). PHARMIP: An insilico method to predict genetics that underpin adverse drug reactions. Methods. 7:1-14. 2. Elhefnawi, M. M., Hasan, M. E., Mahmoud, A., Khidr, Y. A., El-Absawy, E. A., Hemeida, A. A. (2019). Prediction and analysis of three dimensional structure of the p7-transactivated protein1 of hepatitis C virus. Infectious Disorders - Drug Targets. 19(1):55-66. 3. Essam M Janahi; Aboul-Ata E Aboul-Ata; I M El-Kalamawy; Amal Mahmoud; M S El-Ghanam; Kathleen Hefferon. (2017). HBV Genome, HbsAg Isolation and Virotherapy Innovation Using Plant System in the Middle East. HEPATITIS: A GLOBAL HEALTH CONCERN. Vol 2 Chapter 1 P 1-19. ISBN: 978-93-87500-05-1. 4. Elhefnawi, M. M., Hasan, M. E., Mahmoud, A., Khidr, Y. A., El-Absawy, E. A., Hemeida, A. A. (2017). In silico discovery of novel hepatitis c virus p7 transactivated protein1inhibitor by using structure-based virtual screening. J. Product. & Dev., 22(1): 103-119. 5. Mohamed Ezz, Amal Mahmoud, Fawzy A. El-Feky and Alaa A. Hemeida (2017). Searching and Analyzing for a Different Lengths of Microsatellite Repeats in the Completed Genome of Phoenix dactylifera Chloroplast, by Using Regular Expression builder –Language. International Journal of Science and Research (IJSR). 6 (8): 1296-1301. 6. El-aarag, S. Mahmoud, A., Hashem, M. H., Abd Elkader, H., Hemeida, A.E. and ElHefnawi M. (2017). In silico identification of potential key regulatory factors in smoking-induced lung cancer. BMC Medical Genomics 10:40. 7. . 97 مجلد8. Zidan A. M.; Alaa A. Hemeida and Amal Mahmoud (2016). The target to mediate Nitazoxanide's anti-HCV effect. In-silico study. Edition: 1st, Publisher: LAMBERT academic publishing, ISBN: 978-3-659-92424-8 2 9. Nadia S. El-Nahas, Gehan S. Sadek, Amal Mahmoud, Amany A. Rady, Salwa, F. Oshiba and Reham M. Barakat. (2015). Immunological, histopathological and immunohistochemical responses to a new B cell epitope-based vaccine against leishmaniasis in experimental mice. Journal of American Science 11(7). 10. Amal Mahmoud and Medhat H. Hashem (2014). Bioinformatics analysis of polymerase and envelope genes of Hepatitis B virus in Egypt. Egyptian J. Virol. 11 32-37. 11. Zidan, A. M., Hemeida, A. A., Mahmoud, A., Hashem, M. H., (2013). Glycogen Synthase Kinase 3 B prediction as primary cellular target to mediate anti- Hepatitis C effect of Nitazoxanide. 12. Ibrahim, A. I , Hemida A. A., Amal M. Hussain, Bekhit, M. and Amal , A. Zweil. (2013). Comparative Studies On Catharanthus sp. Cultivars using Chlorophyll Content and Peroxidase Isozyme. J. product. & Dev., 18(1):77-84. 13. El-Absawy, E.A , Khidr, Y.A. Mahmoud, A., Hasan, M.E. and Hemeida, A.A. (2012). Somatic Embryogenesis and Plant Regeneration Induced from Mature Seeds, Cotyledons and Shoot Tips of Cucumber. Journal of Productivityand Development. J. Product. & Dev., 17(2): 45- 61. 14. Khidr, Y.A. Mahmoud, A. El-Absawy, E.A. Hemeida, A.A. and Hasan, M.E. (2012). Production of Transgenic Cucumber Plantlets containing Sequences from Watermelon Mosaic Virus-II fused with GFP Gene. Egypt. J. Genet. Cytol. 41(1):19-35. 15. Mahmoud, A. (2012). Comparative sequence analysis and epitope prediction of the partial glycoprotein G gene of bovine ephemeral fever virus isolate from Egypt. Egyptian J. Virol. 9 (1) 49-58. 16. Amal Mahmoud and Medhat H. Hashem. (2012). Phylogenetic subtyping of hepatitis C virus 5' UTR isolated in Egypt and the effect of 2 transitions in subdomain IIId on the apical loop structure. Life Science J. 9(1):903-909. 17. Zaghloul, A. H., Mahmoud, Amal, Hassan, H. Y., Hemeida, A. A., Nayel, M. A. and Zaghawa, A. A. (2012). Establishment of dot-blot hybridization for diagnosis of bovine ephemeral fever virus in Egypt. International J. Virol. 8 (3) 271-278. 18. El-Absawy, E.A; Amal Mahmoud, A.A. Hemeida and M. Helmy (2012). Molecular variation of Potato virus Y isolated from Egypt. International J. Virol. 8 (1) 81-89. 19. Hemeida, A. A.; M. Osman; Mohamed El-Shahat; Medhat H. Hashem; Amal Mahmoud and Hosni Dahi (2011). Genetic variations in a conserved 5'-Untranslated region of hepatitis C virus isolated from Egypt. International J. Virol, 7(3) 91-99. 20. Ibrahim A. I, Hemeida A. A, Nower, A. A., Amal Mahmoud, Salwa N. Zein and Asmaa abdelmordy (2009). Antiserum production and molecular detection of Potato virus X and Potato virus Y. Egyptian J. Virol., 6:273- 285. 21. El-Araby, W., S., Ibrahim, I., A., Hemeida, A., A., Mahmoud, Amal, Soliman, A. M. El-Attar, A. K., and Mazyad, H. M. (2009). Biological, serological and molecular diagnosis of three major potato viruses in Egypt. International journal of virology 5 (2): 77-88. 22. Ammar E.-D., Aboul-Ata A. E.and Mahmoud, A. (2009). Maize virus diseases, “in Virus Diseases affecting crops in the Arab world”. Beirut, Lebanon, 970 pp. 23. Mahmoud A., Royer M., Granier M., Ammar E.-D. and Peterschmitt M. (2007). High genetic identity between RNA 3 segment of an Old World isolate and a New World isolate of Maize stripe virus. Arch Virol 152: 1583-1586. 24. Mahmoud A., Royer M., Granier M., Ammar E.-D., Thouvenel J.-C. and Peterschmitt M. (2007). Evidence for a segmented genome and partial nucleotide sequences of Maize yellow stripe virus, a proposed new tenuivirus. Arch Virol 152: 1757-1762. 25. Ammar E.-D., Khlifa E. A., Mahmoud A., Abol-Ela S. E. and Peterschmitt M. (2007). Evidence for multiplication of the leafhopper-borne maize yellow stripe virus in its vector using ELISA and dot-blot hybridization. Arch Virol 152: 489-494. 3 26. Mahmoud A. (2001). Ph.D. (Biological and molecular characteristics of maize yellow stripe virus and its relationship with the leafhopper vector). M.Sc. thesis, Cairo University, pp154. 27. Mahmoud A. H., Thouvenel J. C., Abol Ela S. E., Sewify G. H. and Ammar E. D. (1996). Detection of maize yellow stripe tenui-like virus by ELISA and dot-blot tests in host plants and leafhopper vector in Egypt. Phytopath. medit. 35, 19-23. 28. Thouvenel J. C., Abol Ela S. E., Sewify G. H., El-Hariry M., Mahmoud A. H. and Ammar E. D. (1996). Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt. Bull. Fac. Agric., Cairo Univ. 47, 179-190. 29. Amal Mahmoud Hussein et Laurent Bigarre. (1995). Diagnostic du virus des rayures jaunes du mais en Egypte. Nouvelles scientifiques. PP 78. 30. Mahmoud A. (1994). M. Sc. (Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt). Ph.D. thesis, Cairo University, pp75. Scientific Research Papers Presented to Refereed Specialized Scientific Conferences 1. Mahmoud A. H., Royer M., Granier M., Ammar E. D., Thouvenel J. C. and Peterschmitt M. (1997). Biological and molecular characterization of the leafhopper-borne maize yellow stripe tenuivirus from Egypt. In: Societe Francaise de Phytopathologie., Proceedings of the 10th congress of the mediterranean phytopathological union. June 1st-5th, 1997, Montpellier, France. P. 349-350. 2. Mahmoud A., Granier M., Peterschmitt M., Abul-Ela S. and Ammar E. D. (2001). Multiplication of maize yellow stripe virus in its leafhopper vector, Cicadulina chinai. First conference on Integrated Pest Management (IPM) At the college of Agriculture, Cairo University, Giza, Egypt on 22nd-23rd April, 2001. 3. Mahmoud A., Sheta H., Grafton-Cardwell E., polek M., Gumpf D., Falk B. and Ullman D. (2002). The role of aphid transmission in Citrus tristeza virus population structure. The American society of virology (ASV) meeting. University of Kentucky, USA on 21-24 July, 2002. 4. Diane E. Ullman, Amal Salem, Hany Sheta and Bryce W. Falk. (2002). Is aphid transmission of Citrus tristeza virus (CTV) a genetic bottleneck?. The 2002ESA Annual Meeting and Exhibition Fort Lauderdale, FL. USA, November, 2002. 5. Ammar E.D., Mahmoud A., Khlifa E., Granier M., Peterschmitt M. (2003). Evidence for multiplication of the leafhopper-borne maize yellow stripe tenui-like virus in its vector and suggestion of a new genus for tenuiviruses [Abstract]. In : Advances in plant virology : A three day International conference at CIRAD, Montpellie r , F rance on 29 September - 1 October 2003. Wellesbourne : Association of Applied Biologists, 1 p.. International Conference : Advances in Plant Virology, 2003-09-29/2003-10-01, Montpellier, France. 6. Ibrahim, A. I., Mazyad, H. M., Hemeida, A. A., Amal, Mahmoud, Soliman, A. M.; El-Attar, A. K. and El-Araby, W. S. (2008). Biological studies, serological and molecular diagnosis of three major potato viruses in Egypt. The Second International Conference of Virology "Emerging and Exotic Viral Infection, Challenging Threats of Human, Animal and Plant Health" 5-6 April, 2008, pp. 24. 7. Ibrahim, A. I., Mazyad, H. M., Hemeida, A. A., Amal, Mahmoud, Soliman, A. M., El-Attar, A. K. and El-Araby, W. S. (2008). Comparative study for the detection of three major potato viruses using several molecular and serological methods. “New Life Sciences: From Promises to Practice” Bio Vision Alexandria 12-16 April 2008, poster presenter's pp. 2. 8. Zaghloul, A. H., Amal Mahmoud, Hassan, H. Y., Hemeida, A. A., Zaghawa, A. A. and Nayel, M. (2010). Establishment of Dot-Blot Hybridization For Diagnosis of Bovine Ephemeral Fever Virus In Egypt. 4The 3rd international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010. 9. Hemeida, A. A.; M. Osman; Mohamed El-Shahat; Medhat H. Hashem; Amal Mahmoud and Hosni Dahi. (2010). Genetic variations in a conserved 5-untranslated region of hepatitis C virus genome isolated from Sohag governate-Egypt. The 3rd international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010. 10. El-Absawy, E. A., Amal Mahmoud, Hemeida, A. A., and Helmy, M. (2010). Molecular variation of Potato virus Y isolated from Egypt. The 3rd international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010. 11. Amal Mahmoud, Maria Tsompana, Hany Sheta, Elizabeth Grafton-Cardwell, MaryLou Polek, J. Gumpf, D, and Diane E. Ullman (2012). Aphid Transmission of Citrus tristeza virus Reduces Nucleotide Diversity and Results in Genotype Alteration and Fixation of New Amino Acid Substitutions in the Leader Proteinase Domain L2. The 4th International Conference of Virology "Towards strategy fo controlling viral pathogens". Sharm ElSheikh, Egypt on 14-16 November, 2012, pp. 67. 12. Amal Mahmoud and Medhat H. Hashem (2014). Bioinformatics analysis of the S Gene of Hepatitis B Virus in Egypt. The 5th international conference of the Egyptian society of virology "Viruses and their potential hazard to human, animal and plant, the role of national & international organization". Hurghada, Egypt on 9-12 December, 2014. 13. Amal Mahmoud, Reham M. Barakat, Nadia S. El-Nahas, Gehan S. Sadek, Amany A. Rady and Salwa F. Oshiba. (2016). Evaluation of Immune Response Against Leishmaniasis in Vaccinated Experimental Mice by Different Antigenic Epitopes. 1st international conference of Genetic Engineering and Biotechnology Research Institute” Integrative science and biotechnology”. Sharm El-Sheikh, Egypt on 26-29 April, 2016. 14. Mohamed Ezz, Amal Mahmoud, Fawzy El-Tohamy and Alaa A. Hemeida (2016). Detection and Comparative Analysis of the Tandem Repeats Motifs in the Completed Genomes of Human Coronavirus (Hku1) By Using Regular Expression Finder Tool. The 6th international conference of the Egyptian society of virology " Viral risks and environmental changes, the role of national & international organization". Hurghada, Egypt on 29November-2 December, 2016. 15. Mahmoud M. El Hefnawi, Mohamed E. Hasan, Amal Mahmoud, Yehia A. Khidr, El-Sayed A. El-Absawy and Alaa A. Hemeida (2016). 3-D structure prediction and analysis of the p7-transactivated protein1 of hepatitis C virus. The 6th international conference of the Egyptian society of virology " Viral risks and environmental changes, the role of national & international organization". Hurghada, Egypt on 29November-2 December, 2016. Current Researches #1<ul style="display: flex;"><li style="flex:1">Research Title </li><li style="flex:1">Name of Investigator(s) </li></ul>Antiviral treatment: Prediction of vaccines and drugs against coronavirus disease-2019(COVID-19) Covid19-2020-001-BASRC Mahmoud Amal, Elhefnawi, M. M., Zidan, A. M., Mostafa A, Ahmad M, Hussein S, Shehata M, Alaarag S 234 Bioinformatics analysis of bacterial alkaline Proteases in Saudi Arabia Project: Production of pathogen-free minitubers of potato in New Wadi governorate Amal Mahmoud, Amany Alqosaibi and Essam Kotb Ibrahim Abd Almaksoud, Taymoor and Amal Mahmoud Amal Mahmoud, Sahar Eldousary, Ekbal Khedr Molecular identification of populations of bacteria associated 5with samples of stored rice in Saudi Arabia Membership of Scientific and Professional Societies and Organizations ••Member, Egyptian Society of Virology (ESV) Member, scientific projects committee Teaching Activities Undergraduate <ul style="display: flex;"><li style="flex:1">#</li><li style="flex:1">Course/Rotation Title </li><li style="flex:1">No./Code </li><li style="flex:1">Extent of Contribution </li></ul>(no. of lectures/Tutorials. Or labs, Clinics) 13 lectures Lab advisor Lab advisor Lab advisor 14 Lectures/ Lab advisor 14 meetings 14 Lectures/ Lab advisor Lab advisor 15 lectures/ Lab advisor 14 lectures/lab advisor 14 lectures 123456789 Cytology Cell biology Parasitology Immunology Molecular Biology Graduation project Molecular Biology Micro techniques Bioinformatics BIOL 142N BIOL 206 BIOL 343N BIOL 442N BIOL 401N BIOL 448N GENETC 308 BIOL401 10 Principle of Genetics 11 Virology 12 Gene regulation GENETC 304 MICRO424 <ul style="display: flex;"><li style="flex:1">GENTC 420 </li><li style="flex:1">14 lectures </li></ul>Postgraduate <ul style="display: flex;"><li style="flex:1">#</li><li style="flex:1">Course/Rotation Title </li><li style="flex:1">No./Code </li><li style="flex:1">Extent of Contribution </li></ul>(no. of lectures/Tutorials. Or labs, Clinics) 123 Advanced Bioinformatics Advanced physiological microbiology Nucleic acid sequence analysis (MSc) ZOOL 624 MICRO 574 B8-10 14Lectures/14 Labs 10 Labs Lectures/labs 45 Proteomics (PhD) Protein sequence analysis (MSc) B8-21 B8-20 Lectures/labs Lectures/labs 6789 Sequence analysis (PhD) Bioinformatics (MSc) Seminars (MSc/PhD) B8-22 B8-2 B8-24 B8-23 Lectures/labs Lectures/labs Lectures Special topics (MSc/PhD) 10 Molecular methods in virology 11 Advanced and general virology 12 Fundamentals of plant virology 13 Plant diseases 14 Transgenic plants 15 Diagnosis and control of plant diseases ---- Lectures Lectures Lectures Lectures Lectures Lectures 6<ul style="display: flex;"><li style="flex:1">Bioinformatics </li><li style="flex:1">BIOL402 </li><li style="flex:1">Lectures </li></ul>Course Coordination #12 Course Title and Code Cytology- BIOL 142N Advanced physiology of Practical Coordination yes Co-coordination --<ul style="display: flex;"><li style="flex:1">Undergrad. Postgrad. </li><li style="flex:1">From </li></ul>2017 2017 to 2018 2017 Yes - -yes <ul style="display: flex;"><li style="flex:1">microbiology </li><li style="flex:1">coordination </li></ul><ul style="display: flex;"><li style="flex:1">3</li><li style="flex:1">Molecular Biology </li><li style="flex:1">Practical </li></ul>coordination Yes Yes Yes <ul style="display: flex;"><li style="flex:1">-</li><li style="flex:1">Yes </li><li style="flex:1">-</li><li style="flex:1">2017 </li><li style="flex:1">2018 </li></ul>456 Bioinformatics Bioinformatics Advanced --- Yes --<ul style="display: flex;"><li style="flex:1">-</li><li style="flex:1">2018 </li></ul>2019 2020 2019 2020 2020 Yes Yes Bioinformatics Supervision of Master and/or PhD Thesis #1 Degre Title eType <ul style="display: flex;"><li style="flex:1">Institution </li><li style="flex:1">Date </li></ul><ul style="display: flex;"><li style="flex:1">2019 </li><li style="flex:1">PhD </li><li style="flex:1">Detection and Comparative Analysis for the </li><li style="flex:1">Bioinformatics department, GEBRI, </li></ul><ul style="display: flex;"><li style="flex:1">Sadat University </li><li style="flex:1">Tandem Repeats Motif / Microsatellite Repeats </li></ul>in the Completed Genomes by Using Regular Expression Finder Tool <ul style="display: flex;"><li style="flex:1">2</li><li style="flex:1">PhD </li><li style="flex:1">Functional genomic analysis for stem rust </li><li style="flex:1">Bioinformatics department, GEBRI, </li><li style="flex:1">2019 </li></ul>

Dr. Amal Mahmoud Salem's CV

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