Table 4. 391 probe sets still rhythmic after sleep deprivation Affymetrix ID Gene Symbol Description Accession time_sin time_cos adj.P.Val 1438211_s_at Dbp D site albumin promoter binding protein BB550183 -0.013 -0.877 1.44E-13 1418174_at Dbp D site albumin promoter binding protein BC018323 -0.036 -0.880 1.74E-13 1425099_a_at Arntl aryl hydrocarbon receptor nuclear translocator-like BC011080 0.135 0.418 1.02E-11 1416958_at Nr1d2 nuclear receptor subfamily 1, group D, member 2 NM_011584 -0.035 -0.397 7.53E-11 1421087_at Per3 period homolog 3 (Drosophila) NM_011067 -0.119 -0.477 3.46E-10 1450779_at Fabp7 fatty acid binding protein 7, brain NM_021272 0.433 0.404 3.82E-10 1424175_at Tef thyrotroph embryonic factor BC017689 -0.113 -0.279 1.39E-09 1435188_at Gm129 gene model 129, (NCBI) BB407125 -0.097 -0.667 4.17E-09 1417602_at Per2 period homolog 2 (Drosophila) AF035830 -0.460 -0.408 5.97E-09 1425560_a_at S100a16 S100 calcium binding protein A16 BC020031 0.228 0.194 5.97E-09 1435459_at Fmo2 flavin containing monooxygenase 2 BM936480 -0.255 -0.426 6.23E-09 1457350_at Per2 period homolog 2 (Drosophila) BG298986 -0.312 -0.485 7.81E-09 1445892_at Per2 Period homolog 2 (Drosophila) BM238318 -0.300 -0.432 1.50E-08 1448383_at Mmp14 matrix metallopeptidase 14 (membrane-inserted) NM_008608 0.082 0.474 3.74E-08 1456046_at Cd93 CD93 antigen AV319144 0.357 0.320 4.89E-08 1429286_at 1190003M12Rik RIKEN cDNA 1190003M12 gene AK004474 -0.511 -0.245 5.08E-08 similar to Putative RNA-binding protein 3 (RNA- 1422660_at LOC671237 AY052560 -0.269 -0.318 5.40E-08 binding motif protein 3) 1416959_at Nr1d2 nuclear receptor subfamily 1, group D, member 2 NM_011584 -0.053 -0.408 1.45E-07 1458176_at Per3 Period homolog 3 (Drosophila) BB021263 -0.036 -0.474 2.17E-07 1433733_a_at Cry1 cryptochrome 1 (photolyase-like) BG069864 -0.378 0.199 7.43E-07 1447676_x_at S100a16 S100 calcium binding protein A16 AV074236 0.201 0.180 9.29E-07 1417168_a_at Usp2 ubiquitin specific peptidase 2 AI553394 -0.019 -0.360 1.15E-06 1428942_at Mt2 metallothionein 2 AA796766 -0.023 -0.485 2.44E-06 1435854_at Tmem10 transmembrane protein 10 AW490730 0.172 0.366 2.76E-06 1420772_a_at Tsc22d3 TSC22 domain family 3 NM_010286 -0.165 -0.476 2.94E-06 1436263_at Mobp myelin-associated oligodendrocytic basic protein AI839848 -0.024 -0.264 2.94E-06 1451355_at Asah3l N-acylsphingosine amidohydrolase 3-like AF282864 -0.023 -0.574 3.24E-06 1418187_at Ramp2 receptor (calcitonin) activity modifying protein 2 AF146523 0.051 -0.283 3.73E-06 1425281_a_at Tsc22d3 TSC22 domain family 3 AF201289 -0.160 -0.468 7.37E-06 1443952_at Thra thyroid hormone receptor alpha BI525006 0.109 -0.196 7.37E-06 1428288_at Klf9 Kruppel-like factor 9 AW488885 0.029 -0.215 7.86E-06 1416572_at Mmp14 matrix metallopeptidase 14 (membrane-inserted) NM_008608 0.114 0.452 7.94E-06 1460510_a_at Coq10b coenzyme Q10 homolog B (S. cerevisiae) AK006551 -0.119 -0.220 9.54E-06 1417603_at Per2 period homolog 2 (Drosophila) AF035830 -0.267 -0.267 1.08E-05 1453435_a_at Fmo2 flavin containing monooxygenase 2 AK009753 -0.253 -0.471 1.12E-05 1426464_at Nr1d1 nuclear receptor subfamily 1, group D, member 1 W13191 0.373 -0.274 1.24E-05 1422869_at Mertk c-mer proto-oncogene tyrosine kinase NM_008587 -0.012 -0.346 1.25E-05 1457373_at --- Transcribed locus BB495006 -0.267 -0.320 1.25E-05 1428223_at Mfsd2 major facilitator superfamily domain containing 2 AK006096 -0.147 -0.258 1.33E-05 1423306_at 2010002N04Rik RIKEN cDNA 2010002N04 gene BI963682 -0.171 -0.346 1.49E-05 1427883_a_at Col3a1 procollagen, type III, alpha 1 AW550625 0.203 0.305 1.49E-05 1422438_at Ephx1 epoxide hydrolase 1, microsomal NM_010145 0.055 -0.220 1.58E-05 Cables1 /// Cdk5 and Abl enzyme substrate 1 /// similar to Cdk5 1422477_at AF328140 -0.027 -0.298 1.62E-05 LOC635753 and Abl enzyme substrate 1 1422678_at Dgat2 diacylglycerol O-acyltransferase 2 AK002443 0.080 -0.199 1.80E-05 1451527_at Pcolce2 procollagen C-endopeptidase enhancer 2 AF352788 -0.057 -0.308 1.98E-05 1448181_at Klf15 Kruppel-like factor 15 BC013486 -0.045 -0.327 2.02E-05 1423100_at Fos FBJ osteosarcoma oncogene AV026617 -0.272 0.418 2.58E-05 1418932_at Nfil3 nuclear factor, interleukin 3, regulated AY061760 0.111 0.288 3.55E-05 1420502_at Sat1 spermidine/spermine N1-acetyl transferase 1 NM_009121 -0.013 0.218 3.90E-05 1427682_a_at Egr2 early growth response 2 X06746 -0.400 0.452 5.78E-05 1417839_at Cldn5 claudin 5 NM_013805 -0.001 0.310 6.07E-05 solute carrier family 2 (facilitated glucose 1434773_a_at Slc2a1 BM207588 -0.061 -0.268 6.60E-05 transporter), member 1 Adult male medulla oblongata cDNA, RIKEN full- 1435119_at --- length enriched library, clone:6330578N16 BE956710 -0.078 -0.515 7.29E-05 product:unclassifiable, full insert sequence 1442025_a_at --- --- AI467657 0.070 -0.357 8.11E-05 interferon-induced protein with tetratricopeptide 1449025_at Ifit3 NM_010501 -0.190 -0.142 8.50E-05 repeats 3 1438648_x_at 1190003M12Rik RIKEN cDNA 1190003M12 gene AV069898 -0.292 -0.010 8.64E-05 1428332_at 1500004A08Rik RIKEN cDNA 1500004A08 gene AW556858 0.069 -0.193 8.95E-05 1448945_at Pllp plasma membrane proteolipid BC024534 0.178 0.110 9.45E-05 1460662_at Per3 period homolog 3 (Drosophila) NM_011067 -0.109 -0.419 1.01E-04 solute carrier family 6 (neurotransmitter transporter, 1424338_at Slc6a13 BC023117 0.049 0.288 1.04E-04 GABA), member 13 1417169_at Usp2 ubiquitin specific peptidase 2 AI553394 0.013 -0.263 1.14E-04 1416125_at Fkbp5 FK506 binding protein 5 U16959 0.028 -0.386 1.56E-04 1457549_at Ccnd3 Cyclin D3 BB043576 -0.097 -0.382 1.56E-04 1418744_s_at Tesc tescalcin NM_021344 0.153 -0.013 1.82E-04 SI Table4_1 Affymetrix ID Gene Symbol Description Accession time_sin time_cos adj.P.Val solute carrier family 2 (facilitated glucose 1426599_a_at Slc2a1 BM209618 -0.020 -0.287 1.82E-04 transporter), member 1 methylenetetrahydrofolate dehydrogenase (NADP+ 1456653_a_at Mthfd1l AV095209 -0.224 -0.158 1.82E-04 dependent) 1-like 1448807_at Hrh3 histamine receptor H 3 NM_133849 -0.027 -0.212 1.83E-04 1428736_at Gramd3 GRAM domain containing 3 AV259880 0.006 0.200 1.92E-04 1436735_at Nsun3 NOL1/NOP2/Sun domain family 3 BB769111 0.157 -0.125 1.98E-04 1434595_at Trim9 tripartite motif protein 9 BQ174474 0.110 0.142 2.09E-04 1457984_at Crh corticotropin releasing hormone BM933756 0.072 0.304 2.09E-04 1417574_at Cxcl12 chemokine (C-X-C motif) ligand 12 NM_013655 -0.192 0.267 2.28E-04 echinoderm microtubule associated protein like 1 /// Eml1 /// 1428321_at similar to echinoderm microtubule associated AK003593 0.139 0.196 2.76E-04 LOC634102 protein like 1 1428487_s_at Coq10b coenzyme Q10 homolog B (S. cerevisiae) AK002294 -0.133 -0.223 2.88E-04 glutamic pyruvate transaminase (alanine 1455007_s_at Gpt2 BI648645 -0.020 -0.242 2.96E-04 aminotransferase) 2 1449379_at Kdr kinase insert domain protein receptor NM_010612 0.090 0.235 3.30E-04 A2m /// alpha-2-macroglobulin /// hypothetical protein 1434719_at BB185854 0.106 0.190 3.31E-04 LOC677369 LOC677369 1425428_at Hif3a hypoxia inducible factor 3, alpha subunit AF416641 -0.128 -0.258 3.40E-04 1436050_x_at Hes6 hairy and enhancer of split 6 (Drosophila) AI326893 0.143 -0.202 3.44E-04 Leo1, Paf1/RNA polymerase II complex component, 1455293_at Leo1 BG065311 0.054 0.167 3.49E-04 homolog (S. cerevisiae) interleukin 22 /// interleukin 10-related T cell-derived 1427624_s_at Il22 /// Iltifb AJ249492 0.163 0.290 3.65E-04 inducible factor beta 1434735_at Hlf hepatic leukemia factor BB744589 -0.126 -0.155 3.65E-04 solute carrier family 2 (facilitated glucose 1426600_at Slc2a1 BM209618 -0.027 -0.297 3.66E-04 transporter), member 1 1434621_at BC054438 cDNA sequence BC054438 AV298104 0.125 -0.160 3.87E-04 1416101_a_at Hist1h1c histone 1, H1c NM_015786 0.172 0.104 4.17E-04 1426641_at Trib2 tribbles homolog 2 (Drosophila) BB354684 -0.106 0.256 5.26E-04 1447272_s_at Atp10a ATPase, class V, type 10A BM249532 -0.093 -0.366 6.94E-04 1416530_a_at Pnp purine-nucleoside phosphorylase BC003788 0.027 0.210 7.57E-04 1416892_s_at 3110001A13Rik RIKEN cDNA 3110001A13 gene BC021353 0.066 0.165 7.72E-04 protein phosphatase 1, regulatory (inhibitor) subunit 1418086_at Ppp1r14a NM_026731 0.214 0.167 8.07E-04 14A 1448929_at F13a1 coagulation factor XIII, A1 subunit NM_028784 -0.097 -0.237 8.07E-04 1424133_at Tmem98 transmembrane protein 98 BC011208 0.138 0.156 8.42E-04 1416332_at Cirbp cold inducible RNA binding protein NM_007705 -0.052 -0.324 9.12E-04 1437449_at Rsad1 radical S-adenosyl methionine domain containing 1 BB818348 0.152 -0.230 9.12E-04 1436387_at Homer1a RIKEN cDNA C330006P03 gene BB398124 -0.088 0.248 9.44E-04 1416591_at Rab34 RAB34, member of RAS oncogene family AF327929 0.177 -0.064 9.55E-04 nuclear factor of kappa light chain gene enhancer in 1448306_at Nfkbia NM_010907 -0.052 -0.306 9.55E-04 B-cells inhibitor, alpha 1450184_s_at Tef thyrotroph embryonic factor NM_017376 -0.105 -0.296 9.97E-04 1434235_at Slc20a2 solute carrier family 20, member 2 BB765719 0.161 0.102 0.0010 1455445_at Cbln3 cerebellin 3 precursor protein BB800230 0.207 -0.098 0.0010 1452975_at Agxt2l1 alanine-glyoxylate aminotransferase 2-like 1 AK005060 -0.202 -0.015 0.0012 1421086_at Per3 period homolog 3 (Drosophila) NM_011067 -0.047 -0.250 0.0018 1416967_at Sox2 SRY-box containing gene 2 U31967 -0.008 0.244 0.0019 1427683_at Egr2 early growth response 2 X06746 -0.356 0.275 0.0019 1448397_at Gjb6 gap junction membrane channel protein beta 6 BC016507 -0.114 -0.148 0.0019 solute carrier family 7 (cationic amino acid 1418326_at Slc7a5 BC026131 0.033 -0.252 0.0020 transporter, y+ system), member 5 1434736_at Hlf hepatic leukemia factor