Effect of Taxon Sampling in Morphological Phylogenetic Analyses: Insights from Three Fly Taxa with Different Diversification Rates

Effect of Taxon Sampling in Morphological Phylogenetic Analyses: Insights from Three Fly Taxa with Different Diversification Rates

1 Effect of taxon sampling in morphological phylogenetic analyses: insights from three fly taxa with different diversification rates Apioceridae: Apiocera sp. © J. Hort Asilidae: Prytanomyia albida Mydidae: Miltinus minutus © J. Hort Torsten Dikow National Museum of Natural History Smithsonian Washington, DC, U.S.A. National Museum of Natural History . introduction 2 Taxon sampling in cladistic analyses ◊ integral and important component -> data + taxa ◊ too often data have priority while taxa are “neglected” ◊ cladistic analyses of insects › morphology – based on museum specimens › traditional molecular – based on more recently collected material › genome molecular – based on newly collected material (RNAlater, DNAgard) ◊ a posteriori taxon exclusion › Was the addition of taxa “necessary” to obtain the same hypothesis of relationships? ◊ a posteriori taxon inclusion › Would the addition of taxa corroborate the postulated hypothesis of relationships? . introduction 3 Diptera = 159,294 valid species (Pape et al. 2011) Deuterophlebiidae Nymphomyiidae Tipulomorpha Ptychopteridae Psychodomorpha Culicomorpha Perissommatidae Bibionomorpha Nemestrinidae Neodiptera Xylophagidae Tabanomorpha Acroceridae Orthorrhapha Hilarimorphidae Bombyliidae Stratiomyomorpha Asilidae Brachycera Asiloidea Mydidae > 8,100 species Empidoidea Apioceridae Apystomyiidae > 15,500 species Eremoneura Therevidae Platypezoidea Scenopinidae Syrphidae Cyclorrhapha Pipunculidae Apsilocephalidae Acalyptratae I Evocoidae Acalyptratae II Schizophora Ephydroidea Calyptratae phylogeny from Wiegmann et al. 2011 (simplified), images Apiocera alleni, Leptomydas lusitanicus, Cyrtopogon lutatius, Echthodopa formosa © G. Ballmer, V. Jacinto, M. Thomas . introduction 4 Apioceridae – “flower-loving flies” ◊ adult flies flower-feeders ◊ size = 15 – 30 mm ◊ 138 species in 1 genus (4 subgenera) ◊ occur only in › Argentina and Chile –> 4 species › Australia –> 67 species Apiocera (Apiocera) pica © J. Hort › South Africa –> 3 species › western North America (Canada, Mexico, USA) –> 64 species ◊ rarely collected Apiocera (Apiocera) sp. © J. Hort . introduction 5 Mydidae – “mydas flies” ◊ adult flies flower-feeders › some adults do not feed at all ◊ size = 9 – 60 mm ◊ 473 species in 66 genera ◊ world-wide primarily in arid regions › southern Africa most speciose Opomydas townsendi ◊ rarely collected Eremomidas arabicus © D. Gardner . introduction 6 Asilidae – “robber flies” or “assassin flies” ◊ adult flies predatory ◊ size = 5 – 60 mm ◊ > 7,500 species in 540 genera ◊ speciose world-wide › arid & semi-arid environments › tropical environments Scleropogon duncani ◊ regularly collected by specialists and non-specialists alike Ceraturgus fasciatus © M. Thomas . introduction 7 Fossils ◊ Crato Formation, Brazil › Cretaceous: Aptian – Albian › ≈ 112 myo › Asilidae – † Araripogon axelrodi › Mydidae – † Cretomydas santanensis Asilidae: † Araripogon axelrodi Mydidae: † Cretomydas santanensis 8 Overview ◊ Methods ◊ a posteriori taxon exclusion › Apioceridae biogeography › Mydidae relationships + female oviposition ◊ a posteriori taxon inclusion/addition › Asilidae: Bathypogoninae status Trichardis picta Prytanomyia albida 9 Methods taxon # known # species in analysis # known # genera analysis species genera Apioceridae all 138 30 21.7 % 4 4 100 % Apioceridae 1 4 2.9 % Apioceridae 2 8 5.8 % Apioceridae 5 14 10.1 % Mydidae all 473 135 28.4 % 66 51 77.2 % Mydidae 1 49 10.4 % Mydidae 2 80 16.9 % Mydidae 5 117 24.7 % Asilidae > 7,500 158 2.1 % 540 140 25.9 % Asilidae 2 159 2.1 % Asilidae 4 161 2.1 % ◊ TNT 1.1 (January 2013) Goloboff et al. 2008 ◊ exhaustive search (Mac mini 2.3 GHz quad-core Intel Core i7, 16 GB RAM) › mult1000; › xmult=rss hits 20 fuse 2 drift 3 ratchet 10 multiply consense 10; .. a posteriori taxon exclusion 10 Apioceridae – Yeates & Irwin 1996 Apioceridae Apiocera (Pyrocera) western North America area relationships Apiocera (Ripidosyrma) South Africa Apiocera (Anypenus) Argentina / Chile Apiocera (Apiocera) Australia .. a posteriori taxon exclusion 11 Apioceridae Apioceridae 1 Apioceridae 2 Apioceridae 5 Apioceridae all Apiocera An philippii Apiocera An obscura Apiocera An obscura Apiocera An obscura Apiocera Ap pica Apiocera An philippii Apiocera An philippii Apiocera An philippii Apiocera P arena Apiocera Ap minor Apiocera Ap tonnoiri Apiocera Ap helenae Apiocera R braunsi Apiocera Ap pica Apiocera R alastor M Apiocera Ap imminuta Apiocera P arena Apiocera R braunsi Apiocera P bilineata Apiocera Ap hardyi Apiocera Ap tonnoiri Apiocera R alastor M Apiocera Ap maritima Apiocera R alastor M Apiocera R braunsi Apiocera Ap minor Apiocera R braunsi Apiocera Ap pica Apiocera Ap goerlingi Apiocera P acuticauda Apiocera Ap asilica Apiocera P arena Apiocera Ap brevicornis Apiocera P parkeri Apiocera P bilineata Apiocera Ap sp Stuart M Apiocera P mexicana M Apiocera Ap hardyi Apiocera Ap pica Apiocera Ap sp Lloyd Apiocera Ap similis Apiocera Ap maritima Apiocera Ap minor Apiocera Ap newmani Apiocera P bilineata Apiocera P mexicana M Apiocera P acuticauda Apiocera P barri Apiocera P martinorum Apiocera P parahydra Apiocera P haruspex Apiocera P aldrichi Apiocera P painteri Apiocera P arena Apiocera P parkeri Apiocera P sp Colnett M length 1787 steps length 1807 steps length 1819 steps length 1839 steps 306 trees 376 trees 345 trees 346 trees monophyletic subgenus .. a posteriori taxon exclusion 12 Rhaphiomidas_maehleri Mydidae Rhaphiomidas_parkeri Mydidae 2 Tongamya_miranda Megascelus_albovillosus Mydidae 1 Megascelus_melanoproctus Neorhaphiomidas_hardyi Rhaphiomidas maehleri Neorhaphiomidas_sp_Mandurah Megascelus albovillosus Cretomydas_santanensis Diochlistus_gracilis Neorhaphiomidas hardyi Diochlistus_melleipennis Tongamya miranda Anomalomydas_mackerrasi Diochlistus gracilis Anomalomydas_australicus_F Cretomydas santanensis Midacritus_stuardoanus_M Midacritus_wagenknechti Anomalomydas mackerrasi Apiophora_paulseni Midacritus wagenknechti Apiophora_quadricinctata Paramydas igniticornis Miltinus_minutus Cacatuopyga basifascia Miltinus_viduatus Ectyphus_armipes Plyomydas peruviensis M Ectyphus_pinguis Dolichogaster brevicornis Parectyphus_namibiensis Messiasia painteri Heteromydas_bicolor Opomydas_townsendi Mydas clavatus Paramydas_igniticornis Phyllomydas parvulus Plyomydas_peruviensis_M Stratiomydas lividus Plyomydas_sp_nov_Tandil Pseudorhopalia mirandai Messiasia_californica_M Messiasia_painteri Perissocerus transcaspicus Mydas_clavatus Rhopalia olivieri Mydas_xanthopterus Apiophora paulseni Stratiomydas_lividus Miltinus viduatus Cacatuopyga_basifascia Cacatuopyga_ruficornis_M Ectyphus pinguis Dolichogaster_brevicornis Parectyphus namibiensis Phyllomydas_bruesii Heteromydas bicolor Phyllomydas_parvulus Opomydas townsendi Pseudorhopalia_mirandai Rhopalia_annulata Eremomidas bek Rhopalia_olivieri Hessemydas daugeroni Perissocerus_dumonti_F Leptomydas lusitanicus Perissocerus_transcaspicus Nemomydas venosus Nemomydas_brachyrhynchus Nemomydas_venosus Afroleptomydas A rufithorax Eremomidas_bek Arenomydas caerulescens Leptomydas_lusitanicus Cephalocera longirostris Hessemydas_daugeroni Eremohaplomydas desertorum Hessemydas_seyrigi Nomoneura_caffra Haplomydas crassipes Nomoneura_paradoxa Lachnocorynus sp nov Kotwa M Nomoneuroides_natalensis Halterorchis karooensis F Namadytes_cimbebasiensis Namadytes vansoni Namadytes_vansoni Afroleptomydas_A_rufithorax Neolaparopsis puncturatus Afroleptomydas_C_mauricei Nomoneura caffra Hispanomydas_hispanicus Nomoneuroides natalensis Syllegomydas_S_algiricus Notosyllegomydas brincki Syllegomydas_S_vittatus Neolaparopsis_puncturatus Hispanomydas hispanicus Haplomydas_crassipes Syllegomydas S algiricus Eremohaplomydas_desertorum Mydaselpis sp nov Daan Lachnocorynus_sp_nov_Kotwa_M Vespiodes phaios Mydaselpis_sp_nov_Daan Vespiodes_leopolditertii Pseudonomoneura hirta Vespiodes_phaios length 1566 steps Mitrodetus dentitarsis Mydaselpis_ngurumani Namibimydas stuckenbergi Arenomydas_caerulescens Nothomydas picketti Arenomydas_callosus 589 trees Cephalocera_longirostris Cephalocera_sp_Papendorp Notosyllegomydas_brincki Eremomidas_arabicus Halterorchis_karooensis_F Leptomydas_sardous Pseudonomoneura_hirta Pseudonomoneura_micheneri Mitrodetus_dentitarsis monophyletic higher taxon Mitrodetus_dimidiatus length 1673 steps Nothomydas_picketti Namibimydas_psamminos Australian Diochlistinae 335 trees Namibimydas_stuckenbergi .. a posteriori taxon exclusion 13 Rhaphiomidas hasbroucki Rhaphiomidas maehleri Rhaphiomidas parkeri Mydidae Tongamya miranda Megascelus albovillosus Mydidae all Megascelus melanoproctus Megascelus nigricornis Rhaphiomidas hasbroucki Neorhaphiomidas sp Mingenew M Rhaphiomidas maehleri Rhaphiomidas parkeri Neorhaphiomidas sp Yanchep Tongamya miranda Neorhaphiomidas hardyi Mydidae 5 Neorhaphiomidas sp Mandurah Megascelus albovillosus Megascelus melanoproctus Cretomydas santanensis Megascelus nigricornis Diochlistus auripennis M Neorhaphiomidas sp Mingenew M Diochlistus gracilis Neorhaphiomidas sp Yanchep Diochlistus melleipennis Neorhaphiomidas hardyi Midacritus stuardoanus M Neorhaphiomidas sp Mandurah Midacritus wagenknechti Cretomydas santanensis Diochlistus auripennis M Apiophora paulseni Diochlistus gracilis Apiophora quadricinctata Diochlistus melleipennis Miltinus stenogaster Apiophora paulseni Miltinus viduatus Apiophora quadricinctata Miltinus maculipennis Midacritus stuardoanus M Miltinus minutus Midacritus wagenknechti Ectyphus armipes Miltinus sp. (Northern Territory) Parectyphus namibiensis Ectyphus armipes Parectyphus namibiensis Ectyphus

View Full Text

Details

  • File Type
    pdf
  • Upload Time
    -
  • Content Languages
    English
  • Upload User
    Anonymous/Not logged-in
  • File Pages
    19 Page
  • File Size
    -

Download

Channel Download Status
Express Download Enable

Copyright

We respect the copyrights and intellectual property rights of all users. All uploaded documents are either original works of the uploader or authorized works of the rightful owners.

  • Not to be reproduced or distributed without explicit permission.
  • Not used for commercial purposes outside of approved use cases.
  • Not used to infringe on the rights of the original creators.
  • If you believe any content infringes your copyright, please contact us immediately.

Support

For help with questions, suggestions, or problems, please contact us