Page S92 58th ASMS Conference on Mass Spectrometry WEDNESDAY POSTERS BIOINFORMATICS, 001 - 026 WP 012 SpecPlot – A Versatile Tool for Spectrum WP 001 Precursor Monoisotopic Mass and charge Visualization; Phil Bouchard; Nuno Bandeira; Center Determination with Almost 100% Accuracy; Xi Han1; for Computational Mass Spectrometry, UCSD, La Jolla, Baozhen Shan2; Bin Ma1; 1University of Waterloo, CA Waterloo, Canada; 2Bioinformatics Solutions Inc., WP 013 Improvement and Application of Analytical Software Waterloo, ON, Canada for Examining Reproducibility in Shotgun WP 002 Constructing a Minimal Spanning Tree for Proteomics; Xinjian Yan; Dmitrii V. Tchekhovskoi; Improving the Analysis of the Mass Spectrum of Bhaskar Godugu; Stephen Stein; NIST, Gaithersburg, Complex Mixtures; Yury Kostyukevich1, 2; Anton MD Grigoriev1, 2; 1, Dolgoprudnii, Russian Federation; WP 014 Fragment Selection and Scoring for Isomer Detection 2MIPT, Dolgoprudnii, Russia by Tandem Mass Spectrometry; Javier Satulovsky; WP 003 A New Approach to Deisotoping of Complex Maggie Bynum; Hongfeng Yin; Kevin Killeen; Agilent Isotopically Resolved Spectra; Dmitry M. Avtonomov1, Laboratories, Santa Clara, CA 2; Ilya A Agron1, 3; Eugene Nikolaev1, 2; 1The Institute WP 015 Online Library of Peptide Fragmentation Mass for Energy Problems of Chemical Phys, Moscow, Spectra; Niksa Blonder; Qian Dong; Yuri Mirokhin; Jeri Russia; 2Institute of Biochemical Physics RAS, Moscow, Roth; Paul Rudnick; Stephen Stein; NIST, Gaithersburg, Russia; 3Institute of Biomedical Chemistry RAMS, MD Moscow, Russia WP 016 Creating Consensus Spectra with a Peak Density- WP 004 Deconvolution of Complex Tandem Mass Spectra of Based Clustering Method; Songfeng Wu; Bhaskar Intact Proteins: A Combinatorial Approach; Xiaowen Godugu; Xiaoyu Yang; Steve Stein; NIST, Gaithersburg, Liu1; Yuval Inbar1; Sara Weitz2; Pieter Dorrestein 2; MD Puneet Souda3; Julian Whitelegge3; Vineet Bafna1; Pavel WP 017 Evaluation of Methods for Unsupervised 1 1 Classification of MALDI Mass Spectra; Joseph Pevzner ; Dept. of Comp. Sci. and Eng., UCSD, La 1 1 1 Jolla, CA; 2Skaggs School, UCSD, La Jolla, CA; Salisbury ; Emmanuel Obasuyi ; Nicole Zaia ; Kristin 3 Boggio1; Nathalie Agar2; Jeffrey Agar1; 1Brandeis Pasarow Mass Spectrometry Laboratory, UCLA, Los 2 Angeles, CA University, Waltham, MA; Brigham and Women's WP 005 Accurate Measurement of Biopolymer Molecular Hospital, Harvard University, Boston, MA WP 018 Outlier Analysis of Protein Microarray Data for Weight with Orbitrap Mass Spectrometer; Zheming 1 Gu; Dawei Zhou; XenoBiotic Laboratories, Inc., Biomarker Discovery; Huy Vuong ; David M. Lubman 1; Michael S. Sabel1; Sara Forrester2; Timothy Barder2; Plainsboro, NJ 1 2 WP 006 Quantitative and Qualitative Aspects of University of Michigan, Ann Arbor, MI; Eprogen, Inc, Deconvolution of Intact Proteins; Natalia Belyaeva; Darien, IL Jim Shofstahl; Thomas Mcclure; Tonya Second; David WP 019 Automated Analysis of Hydrogen/Deuterium Horn; Thermo Fisher Scientific, San Jose, CA Exchange-Mass Spectrometry Data of Large Proteins WP 007 A Novel MS/MS Typing-Based Platform for to Determine Exchange Rate Constant with Near Automated Selection and Detection of Strain-Specific Single-Residue Resolution; Zhongqi Zhang; Gang Biomarkers.; Jane Razumovskaya; Appavu Sundaram; Xiao; Amgen, Thousand Oaks, CA Vladimir M. Doroshenko; SESI, Columbia, MD WP 020 Strategy for Automatic Interpretation of MS Data in WP 008 Exploring Data-Dependent Acquisition Strategies Target Compound Analysis: Evaluation Methods for with COM Instrument Control Libraries for the Comparing Data Against Acceptance Criteria; David LTQ-Orbitrap (Thermo Scientific) Instruments.; N. Heller; Hui Li; FDA/CVM, Laurel, MD Aleksey Nakorchevsky; John Yates; The Scripps WP 021 Biomarker Discovery by Automatic Annotation of N- Research Institute, La Jolla, CA glycan Species in MALDI-TOF-TOF Spectra; Chuan- WP 009 mzServer: Remote Mass-Informatics through a Web- Yih Yu; Anoop M. Mayampurath; Yehia Mechref; Based mzAPI; Manor Askenazi1; James Webber2; Haixu Tang; Indiana University, Bloomington, IN Saurav Singh2; Jarrod Marto2; 1Dana-Farber Cancer WP 022 Improving Wavelet Denoising of HPLC-MS Data by Institute and Hebrew University, Boston, MA; 2Dana Adaptive Thresholding in the Retention Time Domain; Salvatore Cappadona1, 2; Linda Pattini3; Farber Cancer Institute, Boston, MA 4 1, 2 WP 010 First Demonstration on NSE Biomarker of a Fredrik Levander ; Reinout Raijmakers ; Shabaz Mohammed1, 2; Albert J.R. Heck 1, 2; Bas van Breukelen1, Computational Environment Dedicated to Lab-on- 2 1 Chip Based Cancer Diagnosis; Pierre Grangeat1; ; Biomolecular MS & Proteomics - Utrecht University, 1 1 Utrecht, Netherlands; 2Netherlands Proteomics Centre, Laurent Gerfault ; Caroline Paulus ; Vangelis 3 Kritsotakis2; Manolis Tsiknakis2; Frédérique Lisacek3; Utrecht, Netherlands; Bioengineering Department - 4 5 Politecnico di Milano, Milano, Italy; Pierre-Alain Binz ; Manuel M Perez-Perez ; Mathieu 4 Trauchessec6; Virginie Brun6; 1CEA, LETI, MINATEC, Immunotechnology Dept, Lund University, Lund, DTBS, LE2S, Grenoble, France; 2FORTH, ICS, Sweden Heraklion, Greece; 3SIB, Proteome Informatics Group, WP 023 mMass Reloaded - Advances in the Popular Cross- 4 Platform Software for Precise Analysis Of Mass Geneva, Switzerland; GeneBio SA, Geneva, 1 1, Switzerland; 5ATOS Research and Innovation, Madrid, Spectrometric Data; Martin Strohalm ; Daniel Kavan 6 2; Petr Novak1, 2; Vladimir Havlicek1, 3; 1Institute of Spain; CEA/INSERM/UJF U880, LEDyP, Grenoble, 2 France Microbiology, Prague, Czech Republic; Faculty of Science, Charles University, Prague, Czech Republic; WP 011 Beyond Monoisotopic Mass II : Prediction of Peptide 3 PTMs by Isotope Cluster Analysis; Jonathan A Palacky University, Olomouc, Czech Republic Epstein1; Matthew T. Olson2; Peter S. Backlund1; Paul S. WP 024 Digging Deeper into a Million-Spectral Dataset: Blank1; Aaron Catlin1; Alfred L. Yergey 1; 1NICHD, Analysis of 3D-Fractionated Salivary Proteome by NIH, Bethesda, MD; 2JHMI, Baltimore, MD Using Search Algorithms for High-Mass-Accuracy 58th ASMS Conference on Mass Spectrometry Page S93 WEDNESDAY POSTERS Data.; Pratik Jagtap1; Sricharan Bandhakavi2; Sean L. Metz; Netherlands Vaccine Institute, Bilthoven, Seymour3; Tim Griffin2; 1Minnesota Supercomputing Netherlands Institute, UMN, Minneapolis, MN; 2University of WP 037 Determination of the Binding Sites of Minnesota, Minneapolis, MN; 3AB SCIEX, Foster City, Dimethylphenylisocyanate on Human Serum CA Albumin; Justin M. Hettick; Tinashe B. Ruwona; Paul WP 025 A Mathematical Algorithm for Estimation Protein D. Siegel; NIOSH, Morgantown, WV Dynamics Using Mass Spectrometry; Sergei Ilchenko WP 038 Identification of MDI Albumin Adducts with Liquid 2; Nadia Rachdaoui 2; Ling Li1; Belinda Willard1; Arthur Chromatography Tandem Mass Spectrometry and McCullough1; Takhar Kasumov1; 1CCF, Cleveland, OH; Mascot Software; Fagen Zhang; Michael J. Bartels; The 2Case Western Reserve University, Cleveland, OH Dow Chemical Company, Midland, MI WP 026 Probabilistic Scoring of Protein-Protein Interactions WP 039 Characterization of Challenging PEGylated from Label-Free Quantitative AP-MS Data; Therapeutics Utilizing Advanced MS Technology and Hyungwon Choi1; Ashton Breitkreutz2; Dattatreya Novel Preparation Techniques; Tonya Pekar Second1; Mellacheruvu1; Damian Fermin1; Mike Tyers2, 3; Rosa Viner1; Andrew Carr 2; Chad Cummins2; John E. P. Zhaohui Qin1; Anne-Claude Gingras2, 4; Alexey Syka1; Lihua Huang2; 1Thermo Fisher Scientific, San Nesvizhskii1; 1University of Michigan, Ann Arbor, MI; Jose, CA; 2Eli Lilly and Company, Indianapolis, IN 2Samuel Lunenfeld Research Institute, Toronto, Canada; WP 040 Effect of Fluorescent Dye Labeling on Electrospray 3University of Edinburgh, Edinburgh, UK; 4University of Ionization Efficiencies of Peptides and Proteins; Suraj Toronto, Toronto, Canada Saraswat; Dragan Isailovic; University of Toledo, PROTEINS: MODIFIED, 027 - 060 Toledo, OH WP 027 Identification of Acrolein Adducts by LC/MS/MS; WP 041 Formation of Carbamino Groups with Peptides and Maria Ospina; Alina Costin; Hubert Vesper; Proteins Studied by Mass Spectrometry; Donald J. Center/Disease Control & Prevention, Atlanta, GA Douglas; Peran Terrier; University of British Columbia, WP 028 Acetaldehyde Adducts as a Biomarker of Exposure; Vancouver, Canada Alina Costin; Maria Ospina; Hubert Vesper; Centers for WP 042 Use of Label-Free Quantitative Mass Spectrometry to Disease Control and Prevention, Atlanta, GA Identify Lyric Ubiquitylation Sites: Towards the WP 029 Characterization of Intact Complexes of Determination of Lyric Functional Modulation; Karin Barnouin1; Hayley Thirkettle2, 3; Sarah Hanrahan1; Nick Recombinant Albumin Domains with ON 01910, an 1 2 2 1 Antineoplastic Benzylstyryl Sulfone, Using Totty ; David Neal ; Hayley Whitaker ; London Electrospray Mass Spectrometry; John Roboz; Sool Research Institute, Cancer Research UK, London, UK; 2Cambridge Research Institute, Cancer Research UK, Yeon Cho; Mount Sinai School of Medicine, New York, 3 NY Cambridge, UK; Paterson Institute for Cancer WP 030 Interaction Site of Periplasmic Metal-Resistance Research, Manchester, UK Proteins CusF/CusB Determined by Chemical Cross- WP 043 Characterization of Trisulfide -- A Common Linking and Mass Spectrometry; Tiffany Mealman1; Modification in Antibodies; Sheng Gu; Dingyi Wen; Pragya Singh2; David R. Goodlett 2; Megan McEvoy1; R.Blake Pepinsky; Paul H. Weinreb; Yaping Sun; Lihe Vicki H. Wysocki1; 1University of Arizona, Tucson,