Supplemental Table 1. Gene promoters identified by PBX1 ChIP-on-chip. Chro Name PEAK_START PEAK_END PEAK_SCORE PEAK_FDR FEATURE_TO_PEAK_DISTANCE accession description synonyms chr12 9-Mar 56432831 56433180 1.24 3.79E-02 -2160 BC036455 membrane-associated ring finger (C3HC4) 9 FLJ36578|MARCH-IX|RNF179 chr17 ABC1 55511680 55512134 1.03 3.04E-02 -843 CR627418 amplified in breast cancer 1 DKFZp686D22141|FLJ22087 chr17 ABC1 55511680 55512134 1.03 3.04E-02 -689 AF349752 amplified in breast cancer 1 DKFZp686D22141|FLJ22087 chr9 ABCA1 106730857 106731706 0.95 2.89E-02 -1024 AK024328 ATP-binding cassette, sub-family A (ABC1), member 1 ABC-1|ABC1|CERP|FLJ14958|HDLDT1|TGD chr16 ABCA3 2332611 2332760 1.59 2.39E-02 -2090 NM_001089 ATP-binding cassette, sub-family A (ABC1), member 3 ABC-C|ABC3|EST111653|LBM180|MGC72201 chr19 ABCA7 991844 992293 2.2 0.00E+00 -1591 NM_033308 ATP-binding cassette, sub-family A (ABC1), member 7 ABCA-SSN|ABCX|FLJ40025 chr19 ABCA7 991844 992293 2.2 0.00E+00 -175 NM_019112 ATP-binding cassette, sub-family A (ABC1), member 7 ABCA-SSN|ABCX|FLJ40025 chr2 ABCG5 43920467 43920916 1 2.01E-02 -1298 BC111541 ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1) sterolin 1 chr2 ABCG5 43920467 43920916 1 2.01E-02 -1229 NM_022436 ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1) sterolin 1 chr2 ABCG8 43920467 43920916 1 2.01E-02 1085 NM_022437 ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2) sterolin 2 chr2 ABHD1 27198660 27199109 1 3.71E-02 -1321 BC039576 abhydrolase domain containing 1 FLJ36128|LABH1 chr2 ABHD1 27198660 27199109 1 3.71E-02 -1275 NM_152870 abhydrolase domain containing 1 FLJ36128|LABH1 chr3 ABHD10 113180088 113180437 1.84 0.00E+00 -325 NM_018394 abhydrolase domain containing 10 FLJ11342 chr3 ABHD10 113180088 113180437 1.84 0.00E+00 -310 BC014516 abhydrolase domain containing 10 FLJ11342 chr20 ACOT8 43919468 43919817 1.24 8.82E-03 -200 NM_183385 acyl-CoA thioesterase 8 HNAACTE|PTE1|PTE2|hACTE-III|hTE chr19 ACP5 11549796 11550145 1.08 4.62E-02 -476 BC025414 acid phosphatase 5, tartrate resistant MGC117378|TRAP chr19 ACP5 11549796 11550145 1.08 4.62E-02 -474 NM_001611 acid phosphatase 5, tartrate resistant MGC117378|TRAP chr19 ACP5 11549796 11550145 1.08 4.62E-02 795 BC111014 acid phosphatase 5, tartrate resistant MGC117378|TRAP chr10 ACTR1A 104251553 104252102 1.79 0.00E+00 576 BC026016 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr10 ACTR1A 104251553 104252102 1.79 0.00E+00 610 BC000693 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr10 ACTR1A 104251553 104252102 1.79 0.00E+00 624 NM_005736 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr10 ACTR1A 104252753 104253413 1.63 0.00E+00 -679 BC026016 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr10 ACTR1A 104252753 104253413 1.63 0.00E+00 -645 BC000693 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr10 ACTR1A 104252753 104253413 1.63 0.00E+00 -631 NM_005736 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ARP1 chr14 ACYP1 74600489 74600738 2.3 0.00E+00 -133 BC035568 acylphosphatase 1, erythrocyte (common) type ACYPE chr14 ACYP1 74600489 74600738 2.3 0.00E+00 -124 NM_001107 acylphosphatase 1, erythrocyte (common) type ACYPE chr22 ADRBK2 24289545 24290094 0.92 4.83E-02 -1125 NM_005160 adrenergic, beta, receptor kinase 2 BARK2|GRK3 chr22 ADRBK2 24289545 24290094 0.92 4.83E-02 -1040 BC036797 adrenergic, beta, receptor kinase 2 BARK2|GRK3 chr6 AGPAT1 32253677 32254126 1.34 3.80E-03 -2063 BC004310 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 1-AGPAT1|G15|LPAAT-alpha|LPAATA|MGC4007|MGC5423 chr6 AGPAT1 32253677 32254126 1.34 3.80E-03 -2051 BC090849 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 1-AGPAT1|G15|LPAAT-alpha|LPAATA|MGC4007|MGC5423 chr6 AGPAT1 32253677 32254126 1.34 3.80E-03 -2024 NM_006411 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 1-AGPAT1|G15|LPAAT-alpha|LPAATA|MGC4007|MGC5423 chr6 AGPAT1 32253677 32254126 1.34 3.80E-03 -81 NM_032741 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 1-AGPAT1|G15|LPAAT-alpha|LPAATA|MGC4007|MGC5423 chr3 AGTR1 149929803 149930456 1.09 3.04E-02 -573 NM_032049 angiotensin II receptor, type 1 AG2S|AGTR1A|AGTR1B|AT1|AT1B|AT2R1|AT2R1A|AT2R1B|HAT1R chr1 AK2 33274958 33275307 1.34 3.73E-03 -105 BC009405 adenylate kinase 2 ADK2 chr1 AK2 33274958 33275307 1.34 3.73E-03 -91 BC090040 adenylate kinase 2 ADK2 chr1 AK2 33274958 33275307 1.34 3.73E-03 -74 NM_001625 adenylate kinase 2 ADK2 chr1 AK2 33274958 33275307 1.34 3.73E-03 -53 NM_013411 adenylate kinase 2 ADK2 chr17 AKAP1 52527985 52528634 1.11 2.01E-02 -775 NM_139275 A kinase (PRKA) anchor protein 1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|MGC1807|PRKA1|SAKAP84 chr15 AKAP13 83723751 83724803 0.75 3.35E-02 -674 AB055890 A kinase (PRKA) anchor protein 13 AKAP-Lbc|BRX|FLJ11952|FLJ43341|HA-3|Ht31|LBC|PROTO-LB|PROTO-LBC|c-lbc chr15 AKAP13 83723751 83724803 0.75 3.35E-02 -597 NM_006738 A kinase (PRKA) anchor protein 13 AKAP-Lbc|BRX|FLJ11952|FLJ43341|HA-3|Ht31|LBC|PROTO-LB|PROTO-LBC|c-lbc chr12 AKAP3 4627104 4627453 1.03 3.71E-02 -2696 BC047535 A kinase (PRKA) anchor protein 3 AKAP110|FSP95|PRKA3|SOB1 chr12 AKAP3 4627104 4627453 1.03 3.71E-02 -2674 NM_006422 A kinase (PRKA) anchor protein 3 AKAP110|FSP95|PRKA3|SOB1 chrX AKAP4 49851649 49853206 1 1.97E-02 -683 NM_139289 A kinase (PRKA) anchor protein 4 AKAP82|FSC1|HI|hAKAP82|p82 chrX AKAP4 49851649 49853206 1 1.97E-02 -23 NM_003886 A kinase (PRKA) anchor protein 4 AKAP82|FSC1|HI|hAKAP82|p82 chrX AKAP4 49853650 49854009 1.04 3.71E-02 -2085 NM_139289 A kinase (PRKA) anchor protein 4 AKAP82|FSC1|HI|hAKAP82|p82 chrX AKAP4 49853650 49854009 1.04 3.71E-02 -1425 NM_003886 A kinase (PRKA) anchor protein 4 AKAP82|FSC1|HI|hAKAP82|p82 chr19 AKT2 45484353 45484802 1.28 5.15E-03 -1541 NM_001626 v-akt murine thymoma viral oncogene homolog 2 PKBBETA|PRKBB|RAC-BETA chr11 ALKBH3 43856970 43857319 1 3.71E-02 -2049 BC103812 alkB, alkylation repair homolog 3 (E. coli) DEPC-1|DEPC1|MGC118790|MGC118792|MGC118793 chr11 ALKBH3 43856970 43857319 1 3.71E-02 -1854 BC067257 alkB, alkylation repair homolog 3 (E. coli) DEPC-1|DEPC1|MGC118790|MGC118792|MGC118793 chr11 ALKBH3 43856970 43857319 1 3.71E-02 -1825 NM_139178 alkB, alkylation repair homolog 3 (E. coli) DEPC-1|DEPC1|MGC118790|MGC118792|MGC118793 chr17 ALKBH5 18027213 18027562 1.27 5.15E-03 -895 AK000315 alkB, alkylation repair homolog 5 (E. coli) FLJ20308|OFOXD|OFOXD1 chr17 ALKBH5 18027213 18027562 1.27 5.15E-03 -625 NM_017758 alkB, alkylation repair homolog 5 (E. coli) FLJ20308|OFOXD|OFOXD1 chr1 AMY1A 104094063 104094320 1.55 4.78E-03 124 BC092444 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1A 104094063 104094320 1.55 4.78E-03 154 BC063129 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1A 103999966 104000226 1.39 7.52E-03 167 BC092444 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1A 103999966 104000226 1.39 7.52E-03 197 BC063129 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1A 103999966 104000226 1.39 7.52E-03 272 NM_004038 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1A 103999966 104000226 1.39 7.52E-03 433 NM_001008221 amylase, alpha 1A%3B salivary AMY1|AMY1B chr1 AMY1C 104094063 104094320 1.55 4.78E-03 228 NM_001008219 amylase, alpha 1C%3B salivary AMY1 chr14 ANG 20225471 20226424 0.74 4.05E-02 -827 BC062698 angiogenin, ribonuclease, RNase A family, 5 MGC71966|RNASE4|RNASE5 chr8 ANGPT1 108580330 108580789 1.42 1.40E-03 -1129 NM_001146 angiopoietin 1 AGP1|AGPT|ANG1 chr1 ANGPTL7 11171184 11172033 0.94 1.35E-02 -375 NM_021146 angiopoietin-like 7 AngX|CDT6|RP4-647M16.2|dJ647M16.1 chr17 ANKFN1 51583634 51584583 1.07 2.42E-02 -1725 NM_153228 ankyrin-repeat and fibronectin type III domain containing 1 FLJ38335 chr17 ANKFN1 51585934 51586283 1 3.71E-02 274 NM_153228 ankyrin-repeat and fibronectin type III domain containing 1 FLJ38335 chr5 ANKHD1 139760836 139761285 1.12 2.01E-02 -615 AF521882 ankyrin repeat and KH domain containing 1 MASK chr5 ANKHD1 139760836 139761285 1.12 2.01E-02 -576 BC004457 ankyrin repeat and KH domain containing 1 MASK chr5 ANKHD1 139760836 139761285 1.12 2.01E-02 -551 NM_017747 ankyrin repeat and KH domain containing 1 MASK chr18 ANKRD29 19498649 19499005 1.01 3.71E-02 -2050 AK057782 ankyrin repeat domain 29 FLJ25053 chr18 ANKRD29 19498649 19499005 1.01 3.71E-02 -1980 BC030622 ankyrin repeat domain 29 FLJ25053 chr18 ANKRD29 19498649 19499005 1.01 3.71E-02 -1978 NM_173505 ankyrin repeat domain 29 FLJ25053 chr1 ANKRD35 144258500 144258649 1.75 2.39E-02 -2043 BC101618 ankyrin repeat domain 35 FLJ25124|MGC126667|MGC126669 chr1 ANKRD35 144258500 144258649 1.75 2.39E-02 -2025 NM_144698 ankyrin repeat domain 35 FLJ25124|MGC126667|MGC126669 chr15 ANP32A 66902079 66902440 0.95 4.83E-02 -2115 BC106719 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A C15orf1|I1PP2A|LANP|MAPM|MGC119787|PHAP1|PHAPI|PP32 chr15 ANP32A 66902079 66902440 0.95 4.83E-02 -1982 BC007200 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A C15orf1|I1PP2A|LANP|MAPM|MGC119787|PHAP1|PHAPI|PP32 chr1 ANP32E 148474898 148475547 0.94 3.54E-02 -340 AL833660 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E LANP-L|LANPL|MGC5350 chr1 ANP32E 148474898 148475547 0.94 3.54E-02 -275 BC003380 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E LANP-L|LANPL|MGC5350 chr1 ANP32E 148474898 148475547 0.94