Supplemental Figure 2. Published genomes used in this study Genome code proteome_file Genus species Acain1_GeneCatalog_proteins_20150 Acain1 309.aa.fasta Acaromyces ingoldii MCA 4198 Aciri1_iso_GeneCatalog_proteins_20 Aciri1iso 111207.aa.fasta Acidomyces richmondensis Agabivarbi Abisporus_varbisporusH97.v2.Filtere Agaricus bisporus var bisporus sH972 dModels3.proteins.fasta H97 Agabivarb Abisporus_varburnettii.v2.FilteredMo Agaricus bisporus var. burnettii ur1 dels1.proteins.fasta JB137-S8 Altal1_GeneCatalog_proteins_201410 Altal1 10.aa.fasta Alternaria alternata SRC1lrK2f Amamu1_GeneCatalog_proteins_201 Amamu1 20806.aa.fasta Amanita muscaria Koide Amath1_GeneCatalog_proteins_2012 Amath1 0702.aa.fasta Amanita thiersii Skay4041 Amore1_GeneCatalog_proteins_2011 Amore1 0719.aa.fasta Amorphotheca resinae Antav1_GeneCatalog_proteins_20130 Anthostoma_avocetta_NRRL_31 Antav1 828.aa.fasta 90 Armme1_1_GeneCatalog_proteins_20 Armme11 140802.aa.fasta Armillaria mellea Armos1 Armos1.aa.fasta Armillaria ostoye Artol1_GeneCatalog_proteins_201312 Arthrobotrys oligospora ATCC Artol1 09.aa.fasta 24927 Artbe1_GeneCatalog_proteins_20131 Arthroderma benhamiae CBS Artbe1 209.aa.fasta 112371 Artel1_GeneCatalog_proteins_201406 Artel1 30.aa.fasta Artolenzites elegans CIRM1663 Ascim1_GeneCatalog_proteins_20121 Ascim1 221.aa.fasta Ascobolus immersus RN42 Ascsa1_GeneCatalog_proteins_20140 Ascocoryne_sarcoides_NRRL500 Ascsa1 116.aa.fasta 72 Ascru1_GeneCatalog_proteins_20111 Ascoidea rubescens NRRL Ascru1 107.aa.fasta Y17699 Ashgo1_GeneCatalog_proteins_20130 Ashgo1 601.aa.fasta Ashbya gossypii ATCC 10895 Aspfo1_GeneCatalog_proteins_20120 Aspfo1 615.aa.fasta Aspergillus acidus Aspergillus aculeatus Aspac1 Aspac1_filtered_proteins.fasta ATCC16872 Aspbr1_GeneCatalog_proteins_20120 Aspbr1 615.aa.fasta Aspergillus brasiliensis Aspcam1_GeneCatalog_proteins_201 Aspergillus campestris IBT Aspcam1 40128.aa.fasta 28561 Aspca3 Aspca3_filtered_proteins.fasta Aspergillus carbonarius Aspcl1_GeneCatalog_proteins_20120 Aspergillus clavatus NRRL 1 Aspcl1 815.aa.fasta from AspGD Aspfl1_GeneCatalog_proteins_20121 Aspfl1 018.aa.fasta Aspergillus flavus NRRL3357 Aspfu1_GeneCatalog_proteins_20120 Aspergillus fumigatus Af293 Aspfu1 808.aa.fasta from AspGD Aspgl1_GeneCatalog_proteins_20121 Aspgl1 005.aa.fasta Aspergillus glaucus Aspka1_1_GeneCatalog_proteins_201 Aspka11 40116.aa.fasta Aspergillus kawachii IFO 4308 Aspnid1_GeneCatalog_proteins_2011 Aspergillus nidulans from Aspnid1 0130.aa.fasta AspGD Aspni7_GeneCatalog_proteins_20131 Aspni7 226.aa.fasta Aspergillus niger ATCC 1015 AspniNRR Aspni_NRRL3_1_GeneCatalog_prote L31 ins_20140311.aa.fasta Aspergillus niger NRRL3 Aspnov1_GeneCatalog_proteins_2014 Aspergillus novofumigatus IBT Aspnov1 0201.aa.fasta 16806 Aspor1_GeneCatalog_proteins_20120 Aspor1 808.aa.fasta Aspergillus oryzae RIB40 Aspste1_GeneCatalog_proteins_2014 Aspste1 0201.aa.fasta Aspergillus steynii IBT 23096 Aspsy1_GeneCatalog_proteins_20120 Aspsy1 625.aa.fasta Aspergillus sydowii Asptu1_GeneCatalog_proteins_20120 Asptu1 711.aa.fasta Aspergillus tubingensis Aspve1_GeneCatalog_proteins_20120 Aspve1 621.aa.fasta Aspergillus versicolor Aspzo1_GeneCatalog_proteins_20121 Aspzo1 010.aa.fasta Aspergillus zonatus AspfuA11 Aspfu_A1163_1_GeneCatalog_protei 631 ns_20140107.aa.fasta Aspergillus_fumigatus_A1163 Aspte1_GeneCatalog_proteins_20120 Aspte1 919.aa.fasta Aspergillus_terreus_NIH_2624 Aspwe1_GeneCatalog_proteins_2012 Aspwe1 0711.aa.fasta Aspergillus_wentii Atrsp2_GeneCatalog_proteins_20130 Atrsp2 826.aa.fasta Atractiellales sp. Aurpuvar Aurpu_var_mel1_GeneCatalog_protei Aureobasidium pullulans var. mel1 ns_20130418.aa.fasta melanogenum CBS 110374 Aurpuvarn Aurpu_var_nam1_GeneCatalog_prote Aureobasidium pullulans var. am1 ins_20130418.aa.fasta namibiae CBS 147.97 Aurpuvarp Aurpu_var_pul1_GeneCatalog_protei Aureobasidium pullulans var. ul1 ns_20130219.aa.fasta pullulans EXF-150 Aurpuvars Aurpu_var_sub1_GeneCatalog_protei Aureobasidium pullulans var. ub1 ns_20120515.aa.fasta subglaciale EXF-2481 Aurde3_1_GeneCatalog_proteins_201 Aurde31 30729.aa.fasta Auricularia subglabra Babin1_GeneCatalog_proteins_20120 Babjeviella inositovora NRRL Y- Babin1 306.aa.fasta 12698 Basme2finSC_GeneCatalog_proteins_ Basidiobolus meristosporus CBS Basme2 20150701.aa.fasta 931.73 Bauco1_GeneCatalog_proteins_20110 Baudoinia compniacensis UAMH Bauco1 511.aa.fasta 10762 Beaba1_GeneCatalog_proteins_20130 Beaba1 926.aa.fasta Beauveria bassiana ARSEF 2860 Bjead1_1_GeneCatalog_proteins_201 Bjead1 10614.aa.fasta Bjerkandera adusta Bder Bder.fasta Blastomyces dermatitidis Blugr1_GeneCatalog_proteins_20131 Blumeria_graminis_f.sp._hordei_ Blugr1 023.aa.fasta DH14 Botbo1_GeneCatalog_proteins_20110 Botbo1 803.aa.fasta Botryobasidium botryosum Botdo1_GeneCatalog_proteins_20111 Botdo1 003.aa.fasta Botryosphaeria dothidea Botci1_GeneCatalog_proteins_20110 Botci1 903.aa.fasta Botrytis_cinerea Cadsp1_GeneCatalog_proteins_20140 Cadsp1 317.aa.fasta Cadophora sp. DSE1049 Calvi1_GeneCatalog_proteins_20130 Calvi1 829.aa.fasta Calocera viscosa candida_albicans_wo1_1_proteins.fast Calb a Candida albicans Canar1_GeneCatalog_proteins_20111 Candida arabinofermentans Canar1 127.aa.fasta NRRL YB-2248 Canca1_GeneCatalog_proteins_20110 Canca1 525.aa.fasta Candida caseinolytica Y-17796 Cgla Cgla_aa_5215.fasta Candida glabrata Cgui Cgui_aa_5920.fasta Candida guilliermondii Clus Clus_aa_5941.fasta Candida lusitaniae Cpar Cpar_aa_5733.fasta Candida parapsilosis Cs918151 Cs918151.fasta Candida sonorensis Canta1_GeneCatalog_proteins_20120 Candida tanzawaensis NRRL Y- Canta1 131.aa.fasta 17324 Cante1 Cante1_filtered_proteins_v1_1.fasta Candida tenuis NRRL Y-1498 Ctro Ctro_aa_6258.fasta Candida tropicalis Capco1 Capco1.fasta Capronia coronata cbs 617.96 Capep1 Capep1.fasta Capronia epimyces cbs 606.96 Catan1_GeneCatalog_proteins_20120 Catan1 622.aa.fasta Catenaria anguillulae PL171 Cenge3_GeneCatalog_proteins_20130 Cenge3 403.aa.fasta Cenococcum geophilum 1.58 Cersp1_GeneCatalog_proteins_20150 Cersp1 406.aa.fasta Ceraceosorus sp. MCA 4658 Ceriporiopsis_subvermispora.proteins. Ceriporiopsis Gelatoporia Cersu1 fasta subvermispora B Chagl_1_GeneModels_BroadGeneMo Chagl1 dels_aa.fasta Chaetomium globosum Chove1_GeneCatalog_proteins_20131 Chove1 210.aa.fasta Choiromyces venosus 120613-1 Cladophialophora carrionii cbs Claca1 Claca1.fasta 160.54 Cladophialophora psammophila Claps1 Claps1.fasta cbs 110553 Cladophialophora yegresii cbs Claye1 Claye1.fasta 114405 Clafu1_GeneCatalog_proteins_20110 Clafu1 826.aa.fasta Cladosporium fulvum Clapu20 Clapu20.proteins.fasta Claviceps purpurea 20.1 Cocim1_GeneCatalog_proteins_2013 Cocim1 0907.aa.fasta Coccidioides immitis RS Cpos Cpos.fasta Coccidioides posadasii Cocca1_GeneCatalog_proteins_20120 Cocca1 427.aa.fasta Cochliobolus carbonum 26-R-13 CocheC4_1_GeneCatalog_proteins_2 CocheC4 0110824.aa.fasta Cochliobolus heterostrophus C4 CocheC5_3_GeneCatalog_proteins_2 CocheC5 0110901.aa.fasta Cochliobolus heterostrophus C5 Coclu2_GeneCatalog_proteins_20120 Coclu2 521.aa.fasta Cochliobolus lunatus m118 Cocmi1_GeneCatalog_proteins_2012 Cochliobolus miyabeanus ATCC Cocmi1 0427.aa.fasta 44560 Cocsa1_GeneCatalog_proteins_20110 Cocsa1 610.aa.fasta Cochliobolus sativus ND90Pr Cocvi1_GeneCatalog_proteins_20120 Cocvi1 501.aa.fasta Cochliobolus victoriae FI3 Coere1_GeneCatalog_proteins_20110 Coere1 909.aa.fasta Coemansia reversa NRRL 1564 Colgr1_GeneCatalog_proteins_20130 Colletotrichum graminicola Colgr1 906.aa.fasta M1.001 Colhi1_GeneCatalog_proteins_20131 Colletotrichum higginsianum IMI Colhi1 030.aa.fasta 349063 Conco1_GeneCatalog_proteins_20120 Conidiobolus coronatus Conco1 213.aa.fasta NRRL28638 Coniosporium apollinis cbs Conap1 Conap1.fasta 100218 Copci1 Coprinopsis_cinerea.proteins.fasta Coprinopsis cinerea Corbr1 Corbr1.aa.fasta Cordyceps brongniartii CormiAlo ha CormiAloha.aa.fasta Cordyceps militaris Aloha Corca1_GeneCatalog_proteins_20140 Corca1 615.aa.fasta Corynespora cassiicola CCP Croqu1_GeneCatalog_proteins_20120 Cronartium quercuum f. sp. Croqu1 612.aa.fasta fusiforme G11 Cnew Cnew.fasta Cryptococcus gattii CryneJEC Cryne_JEC21_1_GeneCatalog_protei Cryptococcus neoformans var 211 ns_20120305.aa.fasta neoformans JEC21 CryneH99 Cryptococcus_neoformans_H99.protei Cryptococcus_neoformans_var._ 1 ns.fasta grubii_H99 Cybja1_GeneCatalog_proteins_20121 Cyberlindnera jadinii NRRL Y- Cybja1 210.aa.fasta 1542 Cylto1_GeneCatalog_proteins_20130 Cylto1 411.aa.fasta Cylindrobasidium torrendii Daequ1_GeneCatalog_proteins_20130 Daequ1 110.aa.fasta Daedalea_quercina DalEC12_1_GeneCatalog_proteins_2 DalEC121 0111212.aa.fasta Daldinia eschscholzii EC12 Debha1_GeneCatalog_proteins_20130 Debha1 209.aa.fasta Debaryomyces hansenii Debha01 Debha01.renamed.fasta Debaryomyces hansenii COTA2 Dekbr2_GeneCatalog_proteins_20120 Dekbr2 306.aa.fasta Dekkera bruxellensis CBS 2499 Delco1_GeneCatalog_proteins_20140 Delitschia_confertaspora_ATCC_ Delco1 624.aa.fasta 74209 DippiCM W190 DippiCMW190.aa.fasta Diplodia pinea CMW190 Dipsc1 Dipsc1.aa.fasta Diplodia scrobiculata Dipse1 Dipse1.aa.fasta Diplodia seriata Dotsy1_GeneCatalog_proteins_20131 Dotsy1 210.aa.fasta Dothidotthia_symphoricarpi Dotse1_GeneCatalog_proteins_20100 Dotse1 818.aa.fasta Dothistroma septosporum NZE10 Ecun Ecun_aa_1996.fasta Encephalitozoon cuniculi Enche1_GeneCatalog_proteins_20131 Encephalitozoon hellem ATCC Enche1 209.aa.fasta 50504 Encin1_GeneCatalog_proteins_20131 Encephalitozoon intestinalis Encin1 101.aa.fasta ATCC 50506 Encro1_GeneCatalog_proteins_20131 Encephalitozoon romaleae SJ- Encro1 209.aa.fasta 2008 Entbi1_GeneCatalog_proteins_20140 Entbi1