Table S8. positively selected genes (PSGs) identified in glyptosternoid and yellowhead catfish lineages. Lineage Gene ID Gene name Gene description P-value Corrected P-value G. maculatum ENSDARG00000000001 slc35a5 solute carrier family 35, member A5 0 0 G. maculatum ENSDARG00000000656 psmb9a proteasome (prosome, macropain) subunit, beta type, 9a 0 0 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde G. maculatum ENSDARG00000016649 akr7a3 0 0 reductase) G. maculatum ENSDARG00000017422 apmap adipocyte plasma membrane associated protein 0 0 G. maculatum ENSDARG00000003813 srp54 signal recognition particle 54 0 0 G. maculatum ENSDARG00000016173 cct3 chaperonin containing TCP1, subunit 3 (gamma) 0.012102523 0.049848505 G. maculatum ENSDARG00000018049 sf3b2 splicing factor 3b, subunit 2 0 0 G. maculatum ENSDARG00000004581 sel1l sel-1 suppressor of lin-12-like (C. elegans) 0.004079946 0.01759805 G. maculatum ENSDARG00000020344 slc2a8 solute carrier family 2 (facilitated glucose transporter), member 8 0.00E+00 0 G. maculatum ENSDARG00000011885 mrpl19 mitochondrial ribosomal protein L19 0 0 G. maculatum ENSDARG00000012640 cideb cell death-inducing DFFA-like effector b 0.00112672 0.005077819 G. maculatum ENSDARG00000003127 zgc:123105 zgc:123105 0 0 G. maculatum ENSDARG00000012929 eif2d eukaryotic translation initiation factor 2D 0.001049906 0.004752953 G. maculatum ENSDARG00000012947 SKA2 spindle and kinetochore associated complex subunit 2 0 0 G. maculatum ENSDARG00000015851 pnn pinin, desmosome associated protein 0 0 G. maculatum ENSDARG00000011418 sigmar1 sigma non-opioid intracellular receptor 1 0.00E+00 0 G. maculatum ENSDARG00000006926 btd biotinidase 0 0 G. maculatum ENSDARG00000012674 rpusd4 RNA pseudouridylate synthase domain containing 4 0.00E+00 0 G. maculatum ENSDARG00000017389 igfbp7 insulin-like growth factor binding protein 7 1.05E-02 0.043622349 G. maculatum ENSDARG00000013478 rrp15 ribosomal RNA processing 15 homolog (S. cerevisiae) 0 0 Lineage Gene ID Gene name Gene description P-value Corrected P-value G. maculatum ENSDARG00000015221 nsrp1 nuclear speckle splicing regulatory protein 1 0.00E+00 0 G. maculatum ENSDARG00000021439 ncoa4 nuclear receptor coactivator 4 0 0 G. maculatum ENSDARG00000001897 man2b1 mannosidase, alpha, class 2B, member 1 0 0 G. maculatum ENSDARG00000019772 C2 complement component 2 0 0 G. maculatum ENSDARG00000010312 cp ceruloplasmin 0 0 G. maculatum ENSDARG00000010108 bri3bp bri3 binding protein 0 0 G. maculatum ENSDARG00000006005 nudcd3 NudC domain containing 3 0.00E+00 0 G. maculatum ENSDARG00000008395 snupn snurportin 1 0 0 G. maculatum ENSDARG00000021120 ndc1 NDC1 transmembrane nucleoporin 0.008300323 0.035049683 G. maculatum ENSDARG00000013016 POLE4 polymerase (DNA-directed), epsilon 4, accessory subunit 0 0 G. maculatum ENSDARG00000019732 mtch2 mitochondrial carrier homolog 2 0.00E+00 0 G. maculatum ENSDARG00000013542 lpgat1 lysophosphatidylglycerol acyltransferase 1 0 0 G. maculatum ENSDARG00000020895 bag1 BCL2-associated athanogene 1 0 0 G. maculatum ENSDARG00000004665 hspa5 heat shock protein 5 0 0 G. maculatum ENSDARG00000012777 nucks1b nuclear casein kinase and cyclin-dependent kinase substrate 1b 0 0 G. maculatum ENSDARG00000003940 mtfr1l mitochondrial fission regulator 1-like 0 0 G. maculatum ENSDARG00000017046 wbp11 WW domain binding protein 11 0.000825745 0.003824303 G. maculatum ENSDARG00000018953 gclm glutamate-cysteine ligase, modifier subunit 0 0 UDP-N-acetyl-alpha-D-galactosamine:polypeptide G. maculatum ENSDARG00000003829 galnt2 0 0 N-acetylgalactosaminyltransferase 2 SWI/SNF related, matrix associated, actin dependent regulator of G. maculatum ENSDARG00000016871 smarce1 1.18E-05 5.71E-05 chromatin, subfamily e, member 1 G. maculatum ENSDARG00000004470 prkcsh protein kinase C substrate 80K-H 0.00E+00 0 G. maculatum ENSDARG00000012066 dcn decorin 0 0 Lineage Gene ID Gene name Gene description P-value Corrected P-value G. maculatum ENSDARG00000010021 grpel1 GrpE-like 1, mitochondrial 0.00E+00 0 G. maculatum ENSDARG00000011958 ctnnbl1 catenin, beta like 1 0 0 G. maculatum ENSDARG00000012256 taldo1 transaldolase 1 0.00E+00 0 G. maculatum ENSDARG00000014472 eif4a3 eukaryotic translation initiation factor 4A, isoform 3 0.00E+00 0 G. maculatum ENSDARG00000009868 dcaf11 ddb1 and cul4 associated factor 11 0 0 G. maculatum ENSDARG00000008292 eif2s3 eukaryotic translation initiation factor 2, subunit 3 gamma 0 0 G. maculatum ENSDARG00000025538 TMEM254 transmembrane protein 254 0 0 G. maculatum ENSDARG00000024818 rilpl2 Rab interacting lysosomal protein-like 2 2.50E-09 1.24E-08 G. maculatum ENSDARG00000025421 tdrd3 tudor domain containing 3 0.002871064 0.012655348 G. maculatum ENSDARG00000025269 pdcd6ip programmed cell death 6 interacting protein 0.00E+00 0 G. maculatum ENSDARG00000026149 slc46a1 solute carrier family 46, member 1 0 0 G. maculatum ENSDARG00000020323 nup153 nucleoporin 153 0.010289313 0.043086496 G. maculatum ENSDARG00000052374 faf2 Fas associated factor family member 2 0 0 G. maculatum ENSDARG00000026892 gpatch11 G patch domain containing 11 5.25E-08 2.57E-07 G. maculatum ENSDARG00000027078 cnppd1 cyclin Pas1/PHO80 domain containing 1 0.00E+00 0 G. maculatum ENSDARG00000022340 ufc1 ubiquitin-fold modifier conjugating enzyme 1 0 0 G. maculatum ENSDARG00000023309 spryd4 SPRY domain containing 4 0 0 G. maculatum ENSDARG00000022232 ppan peter pan homolog (Drosophila) 0.00091226 0.004186396 G. maculatum ENSDARG00000025635 atp5h ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 0 0 G. maculatum ENSDARG00000032769 slc38a9 solute carrier family 38, member 9 0.00E+00 0 G. maculatum ENSDARG00000034568 fitm2 fat storage-inducing transmembrane protein 2 0 0 G. maculatum ENSDARG00000028889 ndufb10 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 0 0 G. maculatum ENSDARG00000033586 ryroxd1 pyridine nucleotide-disulphide oxidoreductase domain 1 0 0 G. maculatum ENSDARG00000075380 kri1 KRI1 homolog 0 0 Lineage Gene ID Gene name Gene description P-value Corrected P-value G. maculatum ENSDARG00000016132 keap1a kelch-like ECH-associated protein 1a 0 0 G. maculatum ENSDARG00000002830 trmt2a trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae) 0 0 G. maculatum ENSDARG00000023583 coq9 coenzyme Q9 homolog (S. cerevisiae) 0 0 G. maculatum ENSDARG00000030949 srprb signal recognition particle receptor, B subunit 0 0 G. maculatum ENSDARG00000030585 rpl13 ribosomal protein L13 0 0 G. maculatum ENSDARG00000029874 khk ketohexokinase 0 0 G. maculatum ENSDARG00000029724 pqbp1 polyglutamine binding protein 1 0 0 G. maculatum ENSDARG00000015179 mfsd8 major facilitator superfamily domain containing 8 0 0 G. maculatum ENSDARG00000036438 ndufv1 NADH dehydrogenase (ubiquinone) flavoprotein 1 0 0 G. maculatum ENSDARG00000036784 commd7 COMM domain containing 7 0 0 G. maculatum ENSDARG00000051971 arl6ip4 ADP-ribosylation-like factor 6 interacting protein 4 0.00026288 0.001240347 G. maculatum ENSDARG00000037191 ttr transthyretin (prealbumin, amyloidosis type I) 0 0 G. maculatum ENSDARG00000037423 SMIM19 small integral membrane protein 19 0 0 G. maculatum ENSDARG00000004726 trappc11 trafficking protein particle complex 11 0 0 G. maculatum ENSDARG00000037906 alkbh7 alkB, alkylation repair homolog 7 (E. coli) 0 0 G. maculatum ENSDARG00000037955 pih1d1 PIH1 domain containing 1 3.00E-09 1.48E-08 G. maculatum ENSDARG00000073858 pex26 peroxisomal biogenesis factor 26 0.005419477 0.02317691 G. maculatum ENSDARG00000063446 iba57 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae) 0 0 G. maculatum ENSDARG00000038399 polr3h polymerase (RNA) III (DNA directed) polypeptide H 0.001401418 0.006259667 G. maculatum ENSDARG00000039456 acbd6 acyl-Coenzyme A binding domain containing 6 0 0 G. maculatum ENSDARG00000042630 hebp2 heme binding protein 2 0 0 G. maculatum ENSDARG00000040555 bckdha branched chain keto acid dehydrogenase E1, alpha polypeptide 0 0 G. maculatum ENSDARG00000040620 psmg1 proteasome (prosome, macropain) assembly chaperone 1 0 0 G. maculatum ENSDARG00000040730 wdr75 WD repeat domain 75 0 0 Lineage Gene ID Gene name Gene description P-value Corrected P-value G. maculatum ENSDARG00000041088 tufm Tu translation elongation factor, mitochondrial 0.003994488 0.017303707 G. maculatum ENSDARG00000041338 mrpl15 mitochondrial ribosomal protein L15 0 0 G. maculatum ENSDARG00000041362 chmp7 CHMP family, member 7 0 0 G. maculatum ENSDARG00000041575 trmt10c tRNA methyltransferase 10 homolog C (S. cerevisiae) 0 0 G. maculatum ENSDARG00000041830 tsn translin 0 0 G. maculatum ENSDARG00000042458 rfc4 replication factor C (activator 1) 4 0 0 G. maculatum ENSDARG00000042780 apoba apolipoprotein Ba 0 0 G. maculatum ENSDARG00000042821 agps alkylglycerone phosphate synthase 0 0 G. maculatum ENSDARG00000043105 qtrt1 queuine tRNA-ribosyltransferase 1 0 0 G. maculatum ENSDARG00000043457 gapdh glyceraldehyde-3-phosphate dehydrogenase 0.004176678 0.017938294 G. maculatum ENSDARG00000043467 ndufb11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11 0 0 G. maculatum ENSDARG00000043502 ccdc124 coiled-coil domain containing 124 0 0 G. maculatum ENSDARG00000017864 txnrd1 thioredoxin reductase 1 0 0 G. maculatum ENSDARG00000044097 stoml2 stomatin (EPB72)-like 2 0 0 G. maculatum ENSDARG00000044402 nop16 NOP16 nucleolar protein homolog (yeast) 0 0 G. maculatum ENSDARG00000044405 ttc4 tetratricopeptide repeat domain 4 0.000856454 0.003948332 G. maculatum ENSDARG00000044853 rrp7a ribosomal RNA processing 7 homolog A (S. cerevisiae) 0 0 G. maculatum ENSDARG00000045399 cct5 chaperonin containing