Mechanism of Human Telomerase Reverse Transcriptase (Htert) Regulation and Clinical Impacts in Leukemia
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ORIGINAL ARTICLE Short Telomeres and High Telomerase Activity in T
Leukemia (2007) 21, 2456–2462 & 2007 Nature Publishing Group All rights reserved 0887-6924/07 $30.00 www.nature.com/leu ORIGINAL ARTICLE Short telomeres and high telomerase activity in T-cell prolymphocytic leukemia ARo¨th1,JDu¨rig1, H Himmelreich2,3, S Bug4, R Siebert4,UDu¨hrsen1, PM Lansdorp5,6 and GM Baerlocher2,3 1Department of Hematology, University Hospital Essen, University of Duisburg-Essen, Essen, Germany; 2Department of Hematology, University Hospital, Bern, Switzerland; 3Department of Clinical Research, University Hospital, Bern, Switzerland; 4Institute of Human Genetics, Christian-Albrechts-University Hospital Schleswig-Holstein, Kiel, Germany; 5Terry Fox Laboratory, BC Cancer Research Centre, Vancouver, Canada and 6Department of Medicine, University of British Columbia, Vancouver, Canada 4 5 To test the role of telomere biology in T-cell prolymphocytic repeats of the sequence T2AG3 and associated proteins folded leukemia (T-PLL), a rare aggressive disease characterized by into a telomere loop structure.6 Telomeres are required to the expansion of a T-cell clone derived from immuno-compe- tent post-thymic T-lymphocytes, we analyzed telomere length maintain chromosomal integrity and prevent end-to-end fusions and telomerase activity in subsets of peripheral blood leuko- of chromosomes. When telomeric ends become too short, DNA cytes from 11 newly diagnosed or relapsed patients with damage signals from telomeres can induce apoptosis or a state sporadic T-PLL. Telomere length values of the leukemic T cells of replicative senescence.7,8 Telomeres shorten with each round (mean7s.d.: 1.5370.65 kb) were all below the 1st percentile of of cell division as a result of failure to completely replicate the 30 telomere length values observed in T cells from healthy age- end of chromosomes9,10 as well as other causes.11 The average matched controls whereas telomere length of normal T- and telomere length in cells from most human tissues decreases with B cells fell between the 1st and 99th percentile of the normal 12,13 distribution. -
Mutations That Separate the Functions of the Proofreading Subunit of the Escherichia Coli Replicase
G3: Genes|Genomes|Genetics Early Online, published on April 15, 2015 as doi:10.1534/g3.115.017285 Mutations that separate the functions of the proofreading subunit of the Escherichia coli replicase Zakiya Whatley*,1 and Kenneth N Kreuzer*§ *University Program in Genetics & Genomics, Duke University, Durham, NC 27705 §Department of Biochemistry, Duke University Medical Center, Durham, NC 27710 1 © The Author(s) 2013. Published by the Genetics Society of America. Running title: E. coli dnaQ separation of function mutants Keywords: DNA polymerase, epsilon subunit, linker‐scanning mutagenesis, mutation rate, SOS response Corresponding author: Kenneth N Kreuzer, Department of Biochemistry, Box 3711, Nanaline Duke Building, Research Drive, Duke University Medical Center, Durham, NC 27710 Phone: 919 684 6466 FAX: 919 684 6525 Email: [email protected] 1 Present address: Department of Biology, 300 N Washington Street, McCreary Hall, Campus Box 392, Gettysburg College, Gettysburg, PA 17325 Phone: 717 337 6160 Fax: 7171 337 6157 Email: [email protected] 2 ABSTRACT The dnaQ gene of Escherichia coli encodes the ε subunit of DNA polymerase III, which provides the 3’ 5’ exonuclease proofreading activity of the replicative polymerase. Prior studies have shown that loss of ε leads to high mutation frequency, partially constitutive SOS, and poor growth. In addition, a previous study from our lab identified dnaQ knockout mutants in a screen for mutants specifically defective in the SOS response following quinolone (nalidixic acid) treatment. To explain these results, we propose a model whereby in addition to proofreading, ε plays a distinct role in replisome disassembly and/or processing of stalled replication forks. -
S Sarcoma-Associated Herpesvirus Lana2 Protein Interacts with the Pocket Proteins and Inhibits Their Sumoylation
Oncogene (2014) 33, 495–503 & 2014 Macmillan Publishers Limited All rights reserved 0950-9232/14 www.nature.com/onc ORIGINAL ARTICLE Kaposi’s sarcoma-associated herpesvirus lana2 protein interacts with the pocket proteins and inhibits their sumoylation L Marcos-Villar1,5, P Gallego1,5, C Mun˜ oz-Fontela2, CF de la Cruz-Herrera1, M Campagna1, D Gonza´lez1, F Lopitz-Otsoa3, MS Rodrı´guez3,4 and C Rivas1 The pocket proteins retinoblastoma protein (pRb), p107 and p130 are the key targets of oncoproteins expressed by DNA tumor viruses. Some of these viral proteins contain an LXCXE motif that mediates the interaction with the three pocket proteins and the inhibition of the pRb SUMOylation. Kaposi’s sarcoma herpesvirus (KSHV) contains at least two proteins that can regulate pRb function but, so far, a KSHV-encoded protein targeting p107 and p130 has not been identified. Here, we show that the KSHV latent protein LANA2 binds to pRb, p107 and p130. LANA2 contains an LXCXE motif that is required for bypassing pRb-mediated cell-cycle arrest and for inhibiting pRb SUMOylation. Finally, we demonstrate that, in addition to pRb, both p107 and p130 can be SUMOylated, and this modification is also inhibited by LANA2 in an LXCXE-dependent manner. These results demonstrate, for the first time, the SUMOylation of p107 or p130 and, so far, they represent the first example of a KSHV protein able to interact with the three pocket proteins and to inhibit their conjugation to SUMO. Oncogene (2014) 33, 495–503; doi:10.1038/onc.2012.603; published online 14 January 2013 Keywords: pocket proteins; KSHV; LANA2; pocket proteins; sumoylation; LXCXE domain INTRODUCTION vIRF3, interacts with pRb, p130 and p107 in vitro and in vivo. -
THE NANOARCHITECTURE of the KSHV LANA TETHER and APPROACHES to ITS DISRUPTION Margaret Josephine Grant Shelton, CT B.S., Brown U
THE NANOARCHITECTURE OF THE KSHV LANA TETHER AND APPROACHES TO ITS DISRUPTION Margaret Josephine Grant Shelton, CT B.S., Brown University, 2007 A Dissertation presented to the Graduate Faculty of the University of Virginia in Candidacy for the degree of Doctor of Philosophy Department of Microbiology, Immunology, and Cancer Biology University of Virginia May 2018 _____________________________ _____________________________ _____________________________ _____________________________ _____________________________ _____________________________ ii ABSTRACT Kaposi’s sarcoma-associated herpesvirus (KSHV) is the causative agent of three human malignancies and presents a special concern to immunocompromised individuals. Its latency-associated nuclear antigen protein (LANA) tethers latent viral genomes to host chromatin, thereby maintaining viral infection, and as such, is an attractive target for therapeutic intervention. In an effort to better understand this protein and its tethering function, we have used super-resolution microscopy to examine LANA tethers, obtaining information that remained obscured in earlier studies using standard epifluorescence microscopy. We have determined several characteristics of these tethers, including the folding properties of the underlying viral DNA and occupancy of LANA on its available viral binding sites. Quantitative data support the prediction of a coiled-coil feature in LANA dimers, and computer modeling of a minimal LANA tether illustrates the importance of viral DNA bending and nucleosome positioning on tether structure. Preliminary data examining LANA tethers during cellular mitosis suggest a potential role for mitotic machinery in manipulating tether positioning and condensation. This work also begins to address the relative timing of host chromosome condensation and LANA tether formation. These promising early results compel further study of the mitotic LANA tether and its dynamics. -
Transcription Profile of Kaposi's Sarcoma-Associated Herpesvirus in Primary Kaposi's Sarcoma Lesions As Determined by Real-Time PCR Arrays
[CANCER RESEARCH 63, 2010–2015, May 1, 2003] Advances in Brief Transcription Profile of Kaposi’s Sarcoma-associated Herpesvirus in Primary Kaposi’s Sarcoma Lesions as Determined by Real-Time PCR Arrays1 Dirk P. Dittmer2 Department of Microbiology and Immunology, The University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104 Abstract tumor cell expresses at least one viral protein: the LANA/orf73 (2). Antibodies to LANA exist in virtually all HIV-infected as well as Kaposi’s sarcoma (KS) is the signature pathology of AIDS. KS-associ- non-HIV-infected KS patients, and other viral antigens have also been ated herpesvirus (KSHV/HHV-8) is causally linked to KS. Here, we report identified as the targets of this response. Prospective, longitudinal the first complete profile of KSHV transcription in primary KS lesions studies found that increases in peripheral blood viral load as well as using a novel, real-time PCR array. The KSHV latency I mRNAs [latency- associated nuclear antigen (LANA)/orf73, v-cyclin/orf72, and v-FLIP/ KSHV-specific antibody titers precede the onset of disease and cor- orf71] were invariably present in all biopsies. Yet, viral lytic mRNAs were relate with increased risk for KS. In addition, two lymphoproliferative detectable in only a subset of tumors. Interestingly, there was a difference disorders, primary effusion lymphoma (PEL) and multicentric Castle- in the expression pattern of the viral IFN-regulatory factors (vIRFs) man’s disease (MCD), are associated with KSHV (3, 4). These ob- encoded by KSHV. The vIRF-1/K9 clustered with LANA in KS, in con- servations imply (a) that KSHV viral oncogenes are required for KS trast to its homologue, vIRF-3/LANA-2, which is transcribed only in development and (b) that the identification of these viral genes may KSHV-associated lymphomas. -
DNA POLYMERASE III HOLOENZYME: Structure and Function of a Chromosomal Replicating Machine
Annu. Rev. Biochem. 1995.64:171-200 Copyright Ii) 1995 byAnnual Reviews Inc. All rights reserved DNA POLYMERASE III HOLOENZYME: Structure and Function of a Chromosomal Replicating Machine Zvi Kelman and Mike O'Donnell} Microbiology Department and Hearst Research Foundation. Cornell University Medical College. 1300York Avenue. New York. NY }0021 KEY WORDS: DNA replication. multis ubuni t complexes. protein-DNA interaction. DNA-de penden t ATPase . DNA sliding clamps CONTENTS INTRODUCTION........................................................ 172 THE HOLO EN ZYM E PARTICL E. .......................................... 173 THE CORE POLYMERASE ............................................... 175 THE � DNA SLIDING CLAM P............... ... ......... .................. 176 THE yC OMPLEX MATCHMAKER......................................... 179 Role of ATP . .... .............. ...... ......... ..... ............ ... 179 Interaction of y Complex with SSB Protein .................. ............... 181 Meclwnism of the yComplex Clamp Loader ................................ 181 Access provided by Rockefeller University on 08/07/15. For personal use only. THE 't SUBUNIT . .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 182 Annu. Rev. Biochem. 1995.64:171-200. Downloaded from www.annualreviews.org AS YMMETRIC STRUC TURE OF HOLO EN ZYM E . 182 DNA PO LYM ER AS E III HOLO ENZ YME AS A REPLIC ATING MACHINE ....... 186 Exclwnge of � from yComplex to Core .................................... 186 Cycling of Holoenzyme on the LaggingStrand -
Visualization of Molecular Biology: the LANA Tether Vaibhav Jaina and Rolf Rennea,B,C,1
COMMENTARY COMMENTARY Visualization of molecular biology: The LANA tether Vaibhav Jaina and Rolf Rennea,b,c,1 The latency-associated nuclear antigen (LANA) plays we focus on the role of LANA with respect to ge- a central role in the biology and pathogenesis of nome persistence during latency. The first evidence Kaposi’s sarcoma (KS)-associated herpesvirus (KSHV). that KSHV LANA, like EBNA1 from the related hu- Both classical and endemic KS in HIV-infected individ- man tumor virus Epstein–Barr virus (EBV), is re- uals and two lymphoproliferative diseases are associ- sponsibleforgenomesegregationcamein1999, ated with KSHV. During the latent phase of the viral when it was demonstrated that plasmids containing TR life cycle in dividing tumor cells, the LANA protein en- sequences were stably segregated in cells expressing sures that viral genomes persist by supporting both LANA (9, 10). Multiple groups identified the TR se- the initiation of DNA replication and segregation of quences as cis-regulatory elements essential for both viral episomes (nonintegrated circular viral genomes) the initiation of DNA replication and the segregation into daughter cells. Arguably, interrupting these com- of TR-containing plasmids during mitosis. The LANA plex LANA-dependent processes could be one of the C-terminal domain was mapped and shown to bind most promising antiviral and antitumor therapeutic to two LANA binding sites (LBS1 and LBS2) in a co- strategies. Hence, studying the molecular and cell bio- operative manner (11). Next, elegant structural and ge- logical details of LANA’s host/viral protein and chro- netic approaches demonstrated that an 18-aa-long matin interactions has been a focus in a number of N-terminal peptide specifically interacts with the H2A/ laboratories since 1996. -
Restoration of Mir-193A Expression Is Tumor-Suppressive in MYC
Bharambe et al. Acta Neuropathologica Communications (2020) 8:70 https://doi.org/10.1186/s40478-020-00942-5 RESEARCH Open Access Restoration of miR-193a expression is tumor-suppressive in MYC amplified Group 3 medulloblastoma Harish Shrikrishna Bharambe1,2, Annada Joshi1, Kedar Yogi1,2, Sadaf Kazi1 and Neelam Vishwanath Shirsat1,2* Abstract Medulloblastoma, a highly malignant pediatric brain tumor, consists of four molecular subgroups, namely WNT, SHH, Group 3, and Group 4. The expression of miR-193a, a WNT subgroup-specific microRNA, was found to be induced by MYC, an oncogenic target of the canonical WNT signaling. MiR-193a is not expressed in Group 3 medulloblastomas, despite MYC expression, as a result of promoter hypermethylation. Restoration of miR-193a expression in the MYC amplified Group 3 medulloblastoma cells resulted in inhibition of growth, tumorigenicity, and an increase in radiation sensitivity. MAX,STMN1, and DCAF7 were identified as novel targets of miR-193a. MiR- 193a mediated downregulation of MAX could suppress MYC activity since it is an obligate hetero-dimerization partner of MYC. MYC induced expression of miR-193a, therefore, seems to act as a feedback inhibitor of MYC signaling. The expression of miR-193a resulted in widespread repression of gene expression that included not only several cell cycle regulators, WNT, NOTCH signaling genes, and those encoding DNA replication machinery, but also several chromatin modifiers like SWI/SNF family genes and histone-encoding genes. MiR-193a expression brought about a reduction in the global levels of H3K4me3, H3K27ac, the histone marks of active chromatin, and an increase in the levels of H3K27me3, a repressive chromatin mark. -
Rnase-H-Based Assays Utilizing Modified Rna
(19) TZZ ¥_T (11) EP 2 279 263 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12Q 1/68 (2006.01) 04.09.2013 Bulletin 2013/36 (86) International application number: (21) Application number: 09739895.2 PCT/US2009/042454 (22) Date of filing: 30.04.2009 (87) International publication number: WO 2009/135093 (05.11.2009 Gazette 2009/45) (54) RNASE-H-BASED ASSAYS UTILIZING MODIFIED RNA MONOMERS TESTS AUF RNASE-H-BASIS MIT MODIFIZIERTEN RNA-MONOMEREN DOSAGES À BASE DE RNASE-H UTILISANT DES MONOMÈRES D’ARN MODIFIÉS (84) Designated Contracting States: • ROSE, Scott AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Coralville, IA 52241 (US) HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL • DOBOSY, Joseph PT RO SE SI SK TR Coralville, IA 52241 (US) (30) Priority: 30.04.2008 US 49204 P (74) Representative: Grünecker, Kinkeldey, Stockmair & Schwanhäusser (43) Date of publication of application: Leopoldstrasse 4 02.02.2011 Bulletin 2011/05 80802 München (DE) (60) Divisional application: (56) References cited: 13173388.3 EP-A- 1 367 136 WO-A-01/21813 13173389.1 WO-A-03/074724 WO-A-2004/059012 13173390.9 WO-A-2007/062495 WO-A2-2005/021776 13173391.7 WO-A2-2007/141580 US-A- 5 744 308 US-A- 5 830 664 (73) Proprietor: Integrated Dna Technologies, Inc. Coralville, IA 52241 (US) • ITAYA M ET AL: "Molecular cloning of a ribonuclease H (RNase HI) gene from an extreme (72) Inventors: thermophile Thermus thermophilus HB8: a • WALDER, Joseph, Alan thermostable RNase H can functionally replace Chicago, IL 60645 (US) the Escherichia coli enzyme in vivo." NUCLEIC • BEHLKE, Mark, Aaron ACIDS RESEARCH 25 AUG 1991, vol. -
Telomerase Reverse Transcriptase Expression Elevated by Avian Leukosis Virus Integration in B Cell Lymphomas
Telomerase reverse transcriptase expression elevated by avian leukosis virus integration in B cell lymphomas Feng Yang, Rena R. Xian*, Yingying Li, Tatjana S. Polony, and Karen L. Beemon† Department of Biology, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 Communicated by Saul Roseman, The Johns Hopkins University, Baltimore, MD, September 26, 2007 (received for review May 11, 2007) Simple retroviruses induce tumors by integrating into the host integration sites are believed to result from strong biological genome, activating cellular oncogenes and microRNAs, or inacti- selection (7). vating tumor suppressor genes. The identification of these genes Avian leukosis virus (ALV) is a simple retrovirus that does not elucidates molecular mechanisms of tumorigenesis. In this study, encode an oncogene but that can induce tumors by integrating we identified avian leukosis virus (ALV) proviral integration sites in near oncogenes, introducing a strong promoter or enhancer rapid-onset B cell lymphomas arising <12 weeks after infection of sequence (8–12). Typically, ALV induces B cell lymphomas to chicken embryos. By using inverse PCR, 28 unique viral integration develop in Ϸ6 months and frequently involves proviral integra- sites were identified in rapid-onset tumors. Integrations in the tions, resulting in deregulation of the cellular transcription telomerase reverse transcriptase (TERT) promoter/enhancer region factor, myc, as well as bic (precursor to microRNA 155) (10–12). were observed in four different tumors, suggesting that this is a In addition, B cell lymphomas with a more rapid onset (lethal in common integration site. These provirus integrations ranged from Ͻ3 months) have been observed with clonal proviral insertions 217 to 2,584 bp upstream of the TERT transcription initiation site into the myb gene locus, resulting in overexpression of a trun- and were all in the opposite transcriptional orientation to TERT. -
Herpesviral Latency—Common Themes
pathogens Review Herpesviral Latency—Common Themes Magdalena Weidner-Glunde * , Ewa Kruminis-Kaszkiel and Mamata Savanagouder Department of Reproductive Immunology and Pathology, Institute of Animal Reproduction and Food Research of Polish Academy of Sciences, Tuwima Str. 10, 10-748 Olsztyn, Poland; [email protected] (E.K.-K.); [email protected] (M.S.) * Correspondence: [email protected] Received: 22 January 2020; Accepted: 14 February 2020; Published: 15 February 2020 Abstract: Latency establishment is the hallmark feature of herpesviruses, a group of viruses, of which nine are known to infect humans. They have co-evolved alongside their hosts, and mastered manipulation of cellular pathways and tweaking various processes to their advantage. As a result, they are very well adapted to persistence. The members of the three subfamilies belonging to the family Herpesviridae differ with regard to cell tropism, target cells for the latent reservoir, and characteristics of the infection. The mechanisms governing the latent state also seem quite different. Our knowledge about latency is most complete for the gammaherpesviruses due to previously missing adequate latency models for the alpha and beta-herpesviruses. Nevertheless, with advances in cell biology and the availability of appropriate cell-culture and animal models, the common features of the latency in the different subfamilies began to emerge. Three criteria have been set forth to define latency and differentiate it from persistent or abortive infection: 1) persistence of the viral genome, 2) limited viral gene expression with no viral particle production, and 3) the ability to reactivate to a lytic cycle. This review discusses these criteria for each of the subfamilies and highlights the common strategies adopted by herpesviruses to establish latency. -
Latency-Associated Nuclear Antigen of Kaposi's Sarcoma-Associated
JOURNAL OF VIROLOGY, Oct. 2004, p. 10348–10359 Vol. 78, No. 19 0022-538X/04/$08.00ϩ0 DOI: 10.1128/JVI.78.19.10348–10359.2004 Copyright © 2004, American Society for Microbiology. All Rights Reserved. Latency-Associated Nuclear Antigen of Kaposi’s Sarcoma-Associated Herpesvirus Up-Regulates Transcription of Human Telomerase Reverse Transcriptase Promoter through Interaction with Transcription Factor Sp1 Subhash C. Verma, Sumit Borah, and Erle S. Robertson* Department of Microbiology and Abramson Comprehensive Cancer Center, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania Received 20 March 2004/Accepted 11 May 2004 Telomerase is required for the maintenance of telomere length and is an important determinant for cell immortalization. In human cells, telomerase activity is due to the expression of its enzymatic subunit, human telomerase reverse transcriptase (hTERT). The expression of hTERT is not typically detectable in healthy somatic human cells but is present in cancerous tissues and immortalized cells. We have previously shown that hTERT promoter activity is up-regulated by the Kaposi’s sarcoma-associated herpesvirus (KSHV)-encoded latency-associated nuclear antigen (LANA). LANA is expressed in all forms of human malignancies associated with KSHV. The hTERT promoter sequence located at positions ؊130 to ؉5 contains several Sp1 binding motifs and was shown be important for up-regulation by LANA. In this report, we demonstrate that hTERT promoter activity is due to the direct interaction of LANA with Sp1. The interaction of LANA with Sp1 was demonstrated through in vitro binding experiments and coimmunoprecipitation and is supported by the colocalization of these two molecules in the nuclei of KSHV-infected cells.