Calanus Helgolandicus Under Controlled Conditions
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Global Marine Ecological Status Report No
Global Marine Ecological Status Report no. 11 Based on observations from the global ocean Continuous Plankton Recorder surveys Global Alliance of Continuous Plankton Recorder Surveys (GACS) Global Marine Ecological Status Report Based on observations from the global ocean Continuous Plankton Recorder surveys Citation: Edwards, M., Helaouet, P., Alhaija, R.A., Batten, S., Beaugrand, G., Chiba, S., Horaeb, R.R., Hosie, G., Mcquatters-Gollop, A., Ostle, C., Richardson, A.J., Rochester, W., Skinner, J., Stern, R., Takahashi, K., Taylor, C., Verheye, H.M., & Wootton, M. 2016. Global Marine Ecological Status Report: results from the global CPR Survey 2014/2015. SAHFOS Technical Report, 11: 1-32. Plymouth, U.K. ISSN 1744-0750 Published by: Sir Alister Hardy Foundation for Ocean Science ©SAHFOS 2016 ISSN No: ISSN 1744-0750 Contents 2....................................................................Introduction Summary for policy makers 8....................................................................Global CPR observations North Atlantic and Arctic Southern Ocean Northeast Pacific Northwest Pacific South Atlantic and the Benguela Current Eastern Mediterranean Sea Indian Ocean and Australian waters 20...................................................................Applied ecological indicators Climate change Biodiversity Ecosystem health Ocean acidification 30....................................................................Bibliography Introduction The Global Alliance of Continuous Plankton Recorders, known as GACS, brings together the -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Life Cycle and Distribution of Calanus Finmarchicus in Deep Basins on the Nova Scotia Shelf and Seasonal Changes in Calanus Spp
MARINE ECOLOGY PROGRESS SERIES Vol. 66: 225-237, 1990 Published September 6 Mar. Ecol. Prog. Ser. Life cycle and distribution of Calanus finmarchicus in deep basins on the Nova Scotia shelf and seasonal changes in Calanus spp. ' Biological Sciences Branch, Department of Fisheries and Oceans. Bedford Institute of Oceanography, PO Box 1006, Dartmouth, Nova Scotia, Canada B2Y 4A2 Physical/Chemical Sciences Branch, Department of Fisheries and Oceans. Bedford Institute of Oceanography, PO Box 1006, Dartmouth. Nova Scotia. Canada B2Y 4A2 ABSTRACT: The deep basins on the Nova Scotia shelf contain high concentrations of Calanus finmarchicus, C. glacialis, and C. hyperboreus at depths below 200 m. From May to late fall these were as high as 20 000 m-3. The dominant specles by numbers was C. finmarchicus; however, its biomass was equalled or exceeded by C. hyperboreus. The life cycle of C. finmarchicus in the region of 2 of the largest basins showed that breeding started late in winter with a peak in April. High concentrations of Calanus suggested that the basins had higher levels of C. finmarchicus production than the adjacent shelf with mean depths less than 100 m. All 3 species of Calanus started to accumulate below 200 m in May as Stages CIV and CV C. glacialisand C. hyperboreusdid not reproduce in significant numbers on the NW half of the shelf but did accumulate in the basins as they were advected from the NE shelf region. Resting stages of Calanus resided at depths below 200 m in water at between 8.5 and 11 "C for an estimated 7 to 8 mo. -
Ecdysteroids in the Oceanic Copepod Calanus Pacificus: Variation During Molt Cycle and Change Associated with Diapause
M 4648 MARINE ECOLOGY PROGRESS SERIES Vol. 257: 159–165, 2003 Published August 7 Mar Ecol Prog Ser 26 May 2003 CE: rs TS: jw PP: AL Ecdysteroids in the oceanic copepod Calanus pacificus: variation during molt cycle and change associated with diapause Catherine Lynn Johnson1, 2,* 1Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, California 92093-0218, USA 2Present address: Department of Engineering Mathematics, Dalhousie University, PO Box 1000, Halifax, Nova Scotia B3J 2X4, Canada ABSTRACT: Development through the molt cycle in arthropods is characterized both by changes in exoskeleton morphology and by cyclical changes in ecdysteroids, i.e. molting hormones. This study describes for Calanus pacificus ecdysteroid variation during the molt cycle in the fifth copepodid (CV) stage and compares ecdysteroid content of diapausing and active field-collected CVs. In C. pacificus CVs, the pattern of ecdysteroid variation relative to the molt cycle phase is similar to that found in decapod crustacean larvae. Ecdysteroid levels are lowest in the postmolt, the first phase after molting, and then increase to a peak during early premolt. Ecdysteroid levels measured in field- collected diapausing C. pacificus CVs were lower than those in active CVs, as expected based on the predominance of the postmolt phase among diapausing CVs. Ecdysteroid analysis provides a faster, less labor-intensive alternative to jaw-phase analysis for identifying the molt phase of field-collected copepodids, and can provide valuable insights into their life-history status. Measurement of copepod hormonal status in situ may provide a direct means of determining the proximate cues for diapause induction and termination in oceanic copepods. -
A Review of the Biology, Ecology and Conservation Status of the Plankton-Feeding Basking Shark Cetorhinus Maximus
Author's personal copy CHAPTER THREE Sieving a Living: A Review of the Biology, Ecology and Conservation Status of the Plankton-Feeding Basking Shark Cetorhinus Maximus David W. Sim, † s* Contents 1. Introduction 172 2. Description of the Species 174 2.1. Taxonomy 174 2.2. Morphology and structure 175 3. Distribution and Habitat 179 3.1. Total area 179 3.2. Habitat associations 179 3.3. Differential distribution 182 3.4. Climate-driven changes 183 4. Bionomics and Life History 183 4.1. Reproduction 183 4.2. Growth and maturity 184 4.3. Food and feeding 186 4.4. Behaviour 189 5. Population 203 5.1. Structure 203 5.2. Abundance and density 207 5.3. Recruitment 208 5.4. Mortality 209 6. Exploitation 209 6.1. Fishing gear and boats 209 6.2. Fishing areas and seasons 209 6.3. Fishing results 209 6.4. Decline in numbers 210 * Marine Biological Association of the United Kingdom, The Laboratory, Citadel Hill, Plymouth PL1 2PB, United Kingdom { Marine Biology and Ecology Research Centre, School of Biological Sciences, University of Plymouth, Drake Circus, Plymouth PL4 8AA, United Kingdom Advances in Marine Biology, Volume 54 # 2008 Elsevier Ltd. ISSN 0065-2881, DOI: 10.1016/S0065-2881(08)00003-5 All rights reserved. 171 Author's personal copy 172 David W. Sims 7. Management and Protection 211 7.1. Management 211 7.2. Protection 212 8. Future Directions 213 Acknowledgements 214 References 214 Abstract The basking shark Cetorhinus maximus is the world’s second largest fish reach- ing lengths up to 12 m and weighing up to 4 tonnes. -
Calanus Helgolandicus (Copepoda, Calanoida) Along the Iberian and Moroccan Slope S
............. HEL-G;L~NDERM--EiIES UN17~RSU JH U NG E N .......... Helgol~nder Meeresunters. 50 457-475 (1996) Population structure and reproduction of Calanus helgolandicus (Copepoda, Calanoida) along the Iberian and Moroccan slope S. St6hr*, K. Schulz 1. & H.-Ch. John* Zoologisches Institut und Museum der Universit~t Hamburg; Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany ABSTRACT: During three cruises, carried out in March 1991, October 1991, and January 1992 off the Iberian Peninsula and Morocco, the abundant calanoid copepod Calanus helgolandicus (Claus) was collected from a depth of 1000 m to the surface. Differences in depth preference were correla- ted with the life stage and geographically differing vertical salinity structures. In autumn and win- ter, only stage V copepodids (CV) and adults were found, in spring also younger copepodid stages. Within the range of the Mediterranean outflow water (MOW), a sharp decline of abundances of all stages was evident during all cruises. In autumn 1991, the bulk of the population was recorded south of the MOW; in winter 1992 north of it. During winter, numbers had declined by 70 %, supporting the idea that winter individuals represent the same generation as was encountered in autumn, and that they had been transported northwards. CV stages preferred the depth layer 400-800 m, in autumn and winter. Adults were found in autumn at the same depth south of the MOW, while they preferred the 0-400 m layers north of it. In winter, the abundance of adults increased, males prefer- red the 400-600 m depth layer, while females stayed at 200-400 m. -
Simple Procedures to Assess and Compare the Ecological Niche of Species
Vol. 363: 29–37, 2008 MARINE ECOLOGY PROGRESS SERIES Published July 15 doi: 10.3354/meps07402 Mar Ecol Prog Ser Simple procedures to assess and compare the ecological niche of species Grégory Beaugrand1,*, Pierre Helaouët1, 2 1Centre National de la Recherche Scientifique (CNRS), UMR 8013 ELICO, Station Marine, BP 80, 62930 Wimereux, France 2Sir Alister Hardy Foundation for Ocean Science, The Laboratory Citadel Hill, Plymouth PL1 2PB, UK ABSTRACT: Hutchinson’s (1957; Cold Spring Harbour Symp Quant Biol 22:415–427) niche concept is being used increasingly in the context of global change, and is currently applied to many ecologi- cal issues including climate change, exotic species invasion and management of endangered species. For both the marine and terrestrial realms, there is a growing need to assess the breadth of the niches of individual species and to make comparisons among them to forecast the species’ capabilities to adapt to global change. In this paper, we describe simple non-parametric multivariate procedures derived from a method originally used in climatology to (1) evaluate the breadth of the ecological niche of a species and (2) examine whether the niches are significantly separated. We first applied the statistical procedures to a simple fictive example of 3 species separated by 2 environmental fac- tors in order to describe the technique. We then used it to quantify and compare the ecological niche of 2 key-structural marine zooplankton copepod species, Calanus finmarchicus and C. helgolandicus, in the northern part of the North Atlantic Ocean using 3 environmental factors. The test demonstrates that the niches of both species are significantly separated and that the coldwater species has a niche larger than that of its warmer-water congeneric species. -
Short Term Changes in Zooplankton Community During the Summer-Autumn Transition in the Open NW Mediterranean Sea: Species Composition, Abundance and Diversity
Biogeosciences, 5, 1765–1782, 2008 www.biogeosciences.net/5/1765/2008/ Biogeosciences © Author(s) 2008. This work is distributed under the Creative Commons Attribution 3.0 License. Short term changes in zooplankton community during the summer-autumn transition in the open NW Mediterranean Sea: species composition, abundance and diversity V. Raybaud1,2, P. Nival1,2, L. Mousseau1,2, A. Gubanova3, D. Altukhov3, S. Khvorov3, F. Ibanez˜ 1,2, and V. Andersen1,2 1UPMC Universite´ Paris 06, UMR 7093, Laboratoire d’Oceanographie´ de Villefranche, 06230 Villefranche-sur-Mer, France 2CNRS, UMR 7093, LOV, 06230 Villefranche-sur-Mer, France 3Plankton Department, Institute of Biology of the Southern Seas (IBSS), Nakhimov av-2, Sevastopol, 99011 Crimea, Ukraine Received: 26 March 2008 – Published in Biogeosciences Discuss.: 28 May 2008 Revised: 24 September 2008 – Accepted: 17 November 2008 – Published: 16 December 2008 Abstract. Short term changes in zooplankton community 1 Introduction were investigated at a fixed station in offshore waters of the Ligurian Sea (DYNAPROC 2 cruise, September–October Zooplankton play a key role in the pelagic food-web: they 2004). Mesozooplankton were sampled with vertical WP- control carbon production through predation on phytoplank- II hauls (200 µm mesh-size) and large mesozooplankton, ton, its export to depth by sinking of carcasses (Turner, macrozooplankton and micronekton with a BIONESS multi- 2002), faecal pellets (Fowler and Knauer, 1986) and vertical net sampler (500 µm mesh-size). Temporal variations of to- migrations (Longhurst, 1989; Al-Mutairi and Landry, 2001). tal biomass, species composition and abundance of major Zooplankton community structure is highly diverse in terms taxa were studied. -
Seasonal Variation in the Spatial Distribution of Basking Sharks (Cetorhinus Maximus) in the Lower Bay of Fundy, Canada
Seasonal Variation in the Spatial Distribution of Basking Sharks (Cetorhinus maximus) in the Lower Bay of Fundy, Canada Zachary A. Siders1,2*, Andrew J. Westgate2,3, David W. Johnston4, Laurie D. Murison2, Heather N. Koopman2,3 1 Fisheries and Aquatic Sciences, University of Florida, Gainesville, Florida, United States of America, 2 Grand Manan Whale and Seabird Research Station, Grand Manan, New Brunswick, Canada, 3 Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington, North Carolina, United States of America, 4 Nicholas School of the Environment, Duke University, Beaufort, North Carolina, United States of America Abstract The local distribution of basking sharks in the Bay of Fundy (BoF) is unknown despite frequent occurrences in the area from May to November. Defining this species’ spatial habitat use is critical for accurately assessing its Special Concern conservation status in Atlantic Canada. We developed maximum entropy distribution models for the lower BoF and the northeast Gulf of Maine (GoM) to describe spatiotemporal variation in habitat use of basking sharks. Under the Maxent framework, we assessed model responses and distribution shifts in relation to known migratory behavior and local prey dynamics. We used 10 years (2002-2011) of basking shark surface sightings from July- October acquired during boat-based surveys in relation to chlorophyll-a concentration, sea surface temperature, bathymetric features, and distance to seafloor contours to assess habitat suitability. Maximum entropy estimations were selected based on AICc criterion and used to predict habitat utilizing three model-fitting routines as well as converted to binary suitable/non-suitable habitat using the maximum sensitivity and specificity threshold. -
Life History and Ontogenetic Vertical Migration of Neocalanus Gracilis in the Western North Pacific Ocean
Vol. 7: 295–306, 2009 AQUATIC BIOLOGY Published online December 8, 2009 doi: 10.3354/ab00201 Aquat Biol OPENPEN ACCESSCCESS Life history and ontogenetic vertical migration of Neocalanus gracilis in the western North Pacific Ocean Shinji Shimode1,*, Yutaka Hiroe2, Kiyotaka Hidaka2, Kazutaka Takahashi3, Atsushi Tsuda1 1Ocean Research Institute, University of Tokyo, 1-15-1 Minamidai, Nakano, Tokyo 164-8639, Japan 2National Research Institute of Fisheries Science, Fisheries Research Agency, 2-12-4 Fukuura, Kanazawa, Yokohama, Kanagawa 236-8648, Japan 3Tohoku National Fisheries Research Institute, Fisheries Research Agency, 3-27-5, Shinhama-cho, Shiogama, Miyagi 985-0001, Japan ABSTRACT: To better understand the life history and ontogenetic vertical migration of Neocalanus gracilis (Dana), geographical and seasonal change in the copepodid population structure was inves- tigated in the western North Pacific. Multi-layered zooplankton samples were collected from 1000 m depth to the surface at 21 stations (ca. 15 to 48°N, 127°E to 159°W) from September 2001 to June 2006 and from 200 m depth to the surface at a fixed station (30°N, 138°E) from January 2003 to January 2004. N. gracilis was distributed in the southern part of the sampling area <36°N. Early copepodid stages (C1 or C2) were always collected regardless of season, suggesting no seasonality in reproduc- tion. In water columns of from 0 to 1000 m depth, 93% of the total copepodids occurred between the surface and 200 m, and diel vertical migration (DVM) was not clearly observed, except for non- feeding C6 males. Males were mainly distributed in deep layers (<300 m depth) during the daytime, whereas they migrated to shallower layers during night, where the females were present. -
First Record of Blue-Pigmented Calanoid Copepod, Acrocalanus Sp. in the Whale Shark Habitat of Cendrawasih Bay, Papua
First record of blue-pigmented Calanoid Copepod, Acrocalanus sp. in the whale shark habitat of Cendrawasih Bay, Papua - Indonesia 1Diena Ardania, 2Yusli Wardiatno, 2Mohammad M. Kamal 1 Master Program in Aquatic Resources Management, Graduate School of Bogor Agricultural University, Jalan Raya Dramaga, Kampus IPB Dramaga, 16680 Dramaga, West Java, Indonesia; 2 Department of Aquatic Resources Management, Faculty of Fisheries and Marine Sciences, Bogor Agricultural University, Jalan Raya Dramaga, Kampus IPB Dramaga, 16680 Dramaga, West Java, Indonesia. Corresponding author: D. Ardania, [email protected] Abstract. Cendrawasih Bay is famous as a habitat of whale shark. One of the main foods of the whale shark in the bay is the blue-pigmented calanoid copepods. The presence of the blue-pigmented copepod has never been reported in Indonesia. This study was aimed to report the occurrence of a blue- pigmented calanoid copepod (Acrocalanus sp.) from Cendrawasih Bay, Papua as new record. The specimens were collected by means of bongo net, and preserved with 5% sea-buffered formaldeyide. Sample collection was conducted from October to December 2016. Morphological characters of the species are illustrated and described. This finding enhances marine biodiversity list of micro-crustacean in Indonesia, and add more distribution information of the species in the world. Key Words: blue-pigmented copepod, conservation, crustacea, new record, zooplankton. Introduction. Copepods are small aquatic crustaceans and their habitats range from freshwater to hyper saline condition. Copepod is an important link in the aquatic food chain especially for small fish to large fish like whale shark. Kamal et al (2016), Hacohen- Domene et al (2006) and Clark & Nelson (1997) reported that Copepoda was the dominant food of the whale shark (Rhincodon typus).