Dependency on Glucose Marks the Cancerous Phenotype
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Fungal Evolutionary Genomics Provides Insight Into The
Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes Pierre Gladieux, Jeanne Ropars, Helene Badouin, Antoine Branca, Gabriela Aguileta, Damien de Vienne, Ricardo C. Rodriguez de la Vega, Sara Branco, Tatiana Giraud To cite this version: Pierre Gladieux, Jeanne Ropars, Helene Badouin, Antoine Branca, Gabriela Aguileta, et al.. Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes. Molecular Ecology, Wiley, 2014, 23 (4), pp.753-773. 10.1111/mec.12631. hal-01302695 HAL Id: hal-01302695 https://hal.archives-ouvertes.fr/hal-01302695 Submitted on 14 Apr 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Molecular Ecology (2014) 23, 753–773 doi: 10.1111/mec.12631 INVITED REVIEWS AND SYNTHESES Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes PIERRE GLADIEUX,*†‡ JEANNE ROPARS,*† HELENE BADOUIN,*† ANTOINE BRANCA,*† GABRIELA AGUILETA,§¶ DAMIEN M. DE VIENNE,§¶** RICARDO C. RODRIGUEZ DE LA VEGA,*† SARA BRANCO‡ -
Want to Cure Cancer? Then Revisit the Past; “Warburg Was Correct”, Cancer Is a Metabolic Disease
Journal of Cancer Therapy, 2014, 5, 297-305 Published Online March 2014 in SciRes. http://www.scirp.org/journal/jct http://dx.doi.org/10.4236/jct.2014.53036 Want to Cure Cancer? Then Revisit the Past; “Warburg Was Correct”, Cancer Is a Metabolic Disease Robert L. Elliott, Xian P. Jiang, Jonathan F. Head Elliott-Baucom-Head Breast Cancer Research and Treatment Center, Baton Rouge, USA Email: [email protected] Received 20 February 2014; revised 15 March 2014; accepted 21 March 2014 Copyright © 2014 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract I want to make it very clear at the beginning of this communication; this is a controversial opinion review. However, I believe it is time to rethink our approach to cancer research and therapy. Many cancer researchers, especially those involved in cancer genomic research will disagree. I welcome the disagreement and hope it will stimulate an honest debate and dialog between all disciplines of cancer research and treatment. I am convinced that a vast disconnection exists between those in- volved in basic research and those in the clinical arena that treat this disease. Cancer researchers in all areas should not ignore the role of cancer metabolism in tumorigenesis, progression and metastasis. Keywords Host Immunity; Mitochondrial Dysfunction; Warburg Effect; Aerobic Fermentation; Tumor and Mitochondrial Iron Metabolism 1. Introduction (Why This Review?) After being involved in cancer research and treating breast cancer patients for over 40 years, I believe that we seriously need to reconsider how we approach and treat the disease. -
A Single Gal4-Like Transcription Factor Activates the Crabtree Effect in Komagataella Phaffii
ARTICLE DOI: 10.1038/s41467-018-07430-4 OPEN A single Gal4-like transcription factor activates the Crabtree effect in Komagataella phaffii Özge Ata1,2, Corinna Rebnegger1,3, Nadine E. Tatto1,4,5, Minoska Valli1,4, Teresa Mairinger4,6,8, Stephan Hann4,6, Matthias G. Steiger 1,4,Pınar Çalık 2,7 & Diethard Mattanovich 1,4 The Crabtree phenotype defines whether a yeast can perform simultaneous respiration and fermentation under aerobic conditions at high growth rates. It provides Crabtree positive 1234567890():,; yeasts an evolutionary advantage of consuming glucose faster and producing ethanol to outcompete other microorganisms in sugar rich environments. While a number of genetic events are associated with the emergence of the Crabtree effect, its evolution remains unresolved. Here we show that overexpression of a single Gal4-like transcription factor is sufficient to convert Crabtree-negative Komagataella phaffii (Pichia pastoris) into a Crabtree positive yeast. Upregulation of the glycolytic genes and a significant increase in glucose uptake rate due to the overexpression of the Gal4-like transcription factor leads to an overflow metabolism, triggering both short-term and long-term Crabtree phenotypes. This indicates that a single genetic perturbation leading to overexpression of one gene may have been sufficient as the first molecular event towards respiro-fermentative metabolism in the course of yeast evolution. 1 Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria. 2 Department of Biotechnology, Graduate School of Natural and Applied Sciences, Middle East Technical University, 06800 Ankara, Turkey. 3 CD-Laboratory for Growth-Decoupled Protein Production in Yeast, Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria. -
Not a Simple Switch Well As NADPH
MILESTONES MILESTONE 6 Moreover, glucose metabolism in the pentose- phosphate pathway (PPP) was found to be crucial for oncogenic KRAS-induced growth, through generating nucleotide precursors as Not a simple switch well as NADPH. PPP-derived antioxidants are also linked to promoting cancer cell survival, as shown by Joan Brugge’s group, thus highlighting the importance of antioxidant defence in cancer growth. Research in the 2010s led the field further away from Warburg’s path, showing substantial heterogeneity in cancer metabolism, and high- lighting the oncogenotype and tissue environ- ment as key determinants. Eileen White’s and Alec Kimmelman’s groups revealed that onco- genic KRAS-driven cancer cells depend on autophagy, a catabolic pathway that degrades intracellular organelles and macromolecules. Autophagy maintains mitochondrial metab- olism and redox control, and allows cancer cells to maintain growth in nutrient-scarce Credit: peepo Credit: environments. David M. Sabatini’s and Cantley’s groups have reported amplification of Cells respire—they consume oxygen and The link of cancer-driving gene mutations the gene encoding the rate-limiting enzyme in glucose to produce energy in the form of to the Warburg effect was corroborated on the serine synthesis pathway in certain cancer ATP. When oxygen is not available, cells in the level of tumour suppressors. Cellular res- types, thus making the growth of these cancers differentiated tissues break glucose down piration relies on the tricarboxylic acid (TCA) dependent on serine and glycine metabolism. into lactate (through glycolysis) for energy cycle as well as the electron-transport chain Crucially, J. Michael Bishop’s group has shown production. -
Causes and Consequences of Increased Glucose Metabolism of Cancers
Causes and Consequences of Increased Glucose Metabolism of Cancers Robert J. Gillies, Ian Robey, and Robert A. Gatenby University of Arizona, Tucson, Arizona does not appear to be a significant adaptive advantage of using In this review we examine the mechanisms (causes) underlying glycolysis when oxygen is present (the Warburg effect). Yet, the increased glucose consumption observed in tumors within its prevalence in the overwhelming majority of metastatic a teleological context (consequences). In other words, we will tumors is compelling evidence that aerobic glycolysis plays a ask not only ‘‘How do cancers have high glycolysis?’’ but also, very significant role in promoting tumor development. ‘‘Why?’’ We believe that the insights gained from answering the latter question support the conclusion that elevated glucose To address this, the evolutionary dynamics of carcinogen- consumption is a necessary component of carcinogenesis. esis have been modeled using several mathematic methods, Specifically we propose that glycolysis is elevated because it including information theory, evolutionary game theory, produces acid, which provides an evolutionary advantage to reaction–diffusion models, and modified cellular automata cancer cells vis-a-vis` normal parenchyma into which they invade. (2–12). Insights from these models combined with modern Key Words: cancer; glucose; metabolism; carcinogenesis; imaging, what we have termed ‘‘imag(in)ing,’’ have demon- acid-base; somatic evolution strated that hypoxia and acidosis develop inevitably in the J Nucl Med 2008; 49:24S–42S microenvironment of premalignant epithelial tumors, such as DOI: 10.2967/jnumed.107.047258 ductal carcinoma in situ (DCIS). This results from aberrant proliferation that carries cells away from their underlying blood supply, which remains on the opposite side of an in- tact basement membrane (BM). -
Complete Genome Sequence and the Expression Pattern of Plasmids Of
Yang et al. Biotechnol Biofuels (2018) 11:125 https://doi.org/10.1186/s13068-018-1116-x Biotechnology for Biofuels RESEARCH Open Access Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose‑utilizing derivatives 8b and 2032 Shihui Yang1,2*† , Jessica M. Vera3†, Jef Grass3, Giannis Savvakis4, Oleg V. Moskvin3, Yongfu Yang1, Sean J. McIlwain3, Yucai Lyu3,8, Irene Zinonos4, Alexander S. Hebert3, Joshua J. Coon3, Donna M. Bates3, Trey K. Sato3, Steven D. Brown5,6,9, Michael E. Himmel7, Min Zhang2, Robert Landick3, Katherine M. Pappas4* and Yaoping Zhang3*† Abstract Background: Zymomonas mobilis is a natural ethanologen being developed and deployed as an industrial biofuel producer. To date, eight Z. mobilis strains have been completely sequenced and found to contain 2–8 native plasmids. However, systematic verifcation of predicted Z. mobilis plasmid genes and their contribution to cell ftness has not been hitherto addressed. Moreover, the precise number and identities of plasmids in Z. mobilis model strain ZM4 have been unclear. The lack of functional information about plasmid genes in ZM4 impedes ongoing studies for this model biofuel-producing strain. Results: In this study, we determined the complete chromosome and plasmid sequences of ZM4 and its engineered xylose-utilizing derivatives 2032 and 8b. Compared to previously published and revised ZM4 chromosome sequences, the ZM4 chromosome sequence reported here contains 65 nucleotide sequence variations as well as a 2400-bp insertion. Four plasmids were identifed in all three strains, with 150 plasmid genes predicted in strain ZM4 and 2032, and 153 plasmid genes predicted in strain 8b due to the insertion of heterologous DNA for expanded substrate utilization. -
8. 2020-New METABOLISM in CANCER CELLS-Students
METABOLIC ALTERATIONS IN CANCER CELLS METABOLIC CHARACTERISTICS OF CANCER CELLS Increased GLYCOLYTIC ACTIVITY (Warburg Effect) Increased production of LACTATE Loss of PASTEUR’S EFFECT (Oxygen inhibition of glycolysis) INCREASED CONSUMPTION Cox4- of GLUTAMINE 2 INCREASED PROTEIN SYNTHESIS DECREASED PROTEOLYSIS DECREASED SYNTHESIS OF FATTY ACIDS (increased lipolysis from host adipose tissue) ENERGETIC METABOLISM IN TUMOURS • WARBURG EFFECT • In the 1920s, Otto Warburg observed that tumor cells consume a large amount of glucose, much • more than normal cells, and convert most of it to lactic acid. This phenomenon, now known as the • ‘Warburg effect,’ is the foundation of one of the earliest general concepts of cancer: that a • fundamental disturbance of cellular metabolic activity is at the root of tumor formation and growth. Biography Otto Heinrich Warburg: • Born-October 8, 1883 in Germany • Died-August 1, 1970 in Berlin, Germany • Son of physicist Emil Warburg • Otto was a German physiologist and medical doctor. • He won a Nobel prize in Physiology and Medicine for his Warburg effect in 1931. • He was one of the twentieth century's leading biochemist One of his Lectures… • "Cancer, above all other diseases, has countless secondary causes. But, even for cancer, there is only one prime cause. Summarized in a few words, the prime cause of cancer is the replacement of the respiration of oxygen in normal body cells by a fermentation of sugar… " -- Dr. Otto H. Warburg in Lecture The Warburg hypothesis The prime cause of cancer is the replacement of the respiration of oxygen…by a fermentation of sugar…” Injury of respiration Aerobic glycolysis De-differentiation Normal cell Phase I Phase II Phase III Cancer cell The Warburg Effect • Pyruvate is an end-product of glycolysis, and is oxidized within the mitochondria. -
The Warburg Effect and Mitochondrial Stability in Cancer Cells
Molecular Aspects of Medicine 31 (2010) 60–74 Contents lists available at ScienceDirect Molecular Aspects of Medicine journal homepage: www.elsevier.com/locate/mam Review The Warburg effect and mitochondrial stability in cancer cells Vladimir Gogvadze, Boris Zhivotovsky, Sten Orrenius * Institute of Environmental Medicine, Division of Toxicology, Karolinska Institutet, Box 210, Stockholm SE-171 77, Sweden article info abstract Article history: The last decade has witnessed a renaissance of Otto Warburg’s fundamental hypothesis, Received 22 June 2009 which he put forward more than 80 years ago, that mitochondrial malfunction and subse- Received in revised form 31 July 2009 quent stimulation of cellular glucose utilization lead to the development of cancer. Since Accepted 2 December 2009 most tumor cells demonstrate a remarkable resistance to drugs that kill non-malignant cells, the question has arisen whether such resistance might be a consequence of the abnormalities in tumor mitochondria predicted by Warburg. The present review discusses Keywords: potential mechanisms underlying the upregulation of glycolysis and silencing of mitochon- The Warburg effect drial activity in cancer cells, and how pharmaceutical intervention in cellular energy Apoptosis Mitochondria metabolism might make tumor cells more susceptible to anti-cancer treatment. Cancer Ó 2009 Elsevier Ltd. All rights reserved. Contents 1. Introduction: The Warburg effect vs. the Pasteur effect – historical background and current views. ....... 61 2. Possible mechanisms of mitochondrial silencing in cancer cells . .......................................... 62 2.1. The Crabtree effect . ...................................................................... 62 2.2. HIF and suppression of mitochondrial activity . ................................................... 62 2.3. Importance of ROS in cancer . ...................................................................... 63 3. Consequences of the glycolytic switch in tumors . ............................................................. 64 4. -
Discussion of Doctor Greenstein's Paper*
Discussion of Doctor Greenstein's Paper* SIDNEY WEINHOUSE (Lankenau Ho,pital Research Institute and The Insiituiefor Cancer Research, Philad4phia, Pa.) Dr. Greenstein in his scholarly and thoughtful and processes are integrated to produce the func. review has provided a theme which is indeed a tioning cell. fundamental one in biology—that of biochemical The harmonious activities of the functioning uniformity versus heterogeneity. I have been cell may be compared with the musical structure of deeply impressed by the great deal of evidence a beautiful symphony. Suppose we had befoi@e us that can be collected to show that, biochemically, all the various elements of music which made up the cancer cell is a distinctive cell type. Though the symphony but did not have the actual score. the cancer cell may or may not retain certain char We could classify the notes into so many of each acteristics of its non-neoplastic ancestor, in its notes of the scale, and we could subclassify these enzymatic characteristics it apparently resembles into half-, quarter-, eighth-, and sixteenth-notes. its sisters and cousins more than its parent. What After careful analysis of such data we would know I may call the Greenstein Hypothesis, that in the a great deal about the ingredients of a symphony. neoplastic transformation there is a convergence of Possibly by pursuing this study further we might enzyme activities to a common pattern, is one of even find that by and large all symphonies have the few experimentally conceived generalizations the same content of these various musical com in the cancer field. -
Mitochondrial Uncoupling and the Warburg Effect: Molecular Basis for the Reprogramming of Cancer Cell Metabolism
Published OnlineFirst March 3, 2009; DOI: 10.1158/0008-5472.CAN-08-3722 Published Online First on March 3, 2009 as 10.1158/0008-5472.CAN-08-3722 Review Mitochondrial Uncoupling and the Warburg Effect: Molecular Basis for the Reprogramming of Cancer Cell Metabolism Ismael Samudio,1 Michael Fiegl,1 and Michael Andreeff 1,2 1Section of Molecular Hematology and Therapy, Department of Stem Cell Transplantation and Cellular Therapy, and 2Department of Leukemia, The University of Texas M. D. Anderson Cancer Center, Houston, Texas Abstract glycolysis in cancer cells have been reproduced countless times— The precise mitochondrial alterations that underlie the not to mention the wealth of positron emission tomography increased dependence of cancer cells on aerobic glycolysis images that support an increased uptake of radiolabeled glucose in for energy generation have remained a mystery. Recent tumor tissues. evidence suggests that mitochondrial uncoupling—the abro- It is noteworthy that although Warburg’s hypothesis remains a gation of ATP synthesis in response to mitochondrial topic of discussion among cancer biologists, Otto Warburg himself membrane potential—promotes the Warburg effect in had alluded to an alternative hypothesis put forth by Feodor leukemia cells, and may contribute to chemoresistance. Lynen—one which did not necessitate permanent or transmissible Intriguingly, leukemia cells cultured on bone marrow–derived alterations to the oxidative capacity of mitochondria—that suggested the possibility that the increased dependence of cancer stromal feeder layers are more resistant to chemotherapy, increase the expression of uncoupling protein 2, and decrease cells on glycolysis stemmed not from their inability to reduce oxygen, but rather from their inability to synthesize ATP in the entry of pyruvate into the Krebs cycle—without compro- DC mising the consumption of oxygen, suggesting a shift to the response to the mitochondrial proton gradient ( M; ref. -
Reinventing Cancer Cell Metabolism
CCR FOCUS From the Editor Reinventing Cancer Cell Metabolism In today’s media world, when journal publications seem at times to be outdated by the time they appear in print, oncologists are fascinated to find that experiments reported some 80 years ago could be the object of surprising new discoveries. And yet, that is precisely the setting for the CCR Focus published in this issue of Clinical Cancer Research. In 1931, Otto Warburg (top photo) was awarded the Nobel Prize in Physiology or Medicine for his discovery that, in essence, cancer cells under normal conditions metabolize glucose as though they lack oxygen, deriving much of their energy from a high rate of glycolysis. In a 1956 lecture, Warburg explained that normal livers and kidneys obtain 100 times more energy from mitochondrial respiration [oxidation of pyruvate in the tricarboxylic acid (TCA) cycle] than from glycolysis and lactate production in the cytoplasm, whereas cancer cells obtain energy equally from both sources (1). Warburg went further to state that cancer was caused by respiratory Otto Heinrich Warburg, impairment, the Warburg hypothesis, which can be contrasted with the experimental 1883–1970 observation known as the Warburg effect. We now understand that this "glycolytic preference" allows the cancer cell to generate all the components required for sustained cellular proliferation. All successful cancers engage this switch to glycolysis, and many of the mutations that drive proliferation and oncogenesis also alter metabolic regu- lation. With the leadership of Guest Editor Beverly Teicher, the experts contributing to this CCR Focus section discuss the profound metabolic changes that promote cancer cell survival. -
Diversity and Adaptive Evolution of Saccharomyces Wine Yeast: a Review Souhir Marsit, Sylvie Dequin
Diversity and adaptive evolution of Saccharomyces wine yeast: a review Souhir Marsit, Sylvie Dequin To cite this version: Souhir Marsit, Sylvie Dequin. Diversity and adaptive evolution of Saccharomyces wine yeast: a review. FEMS Yeast Research, Oxford University Press (OUP), 2015, 15 (7), 12 p. 10.1093/femsyr/fov067. hal-01837757 HAL Id: hal-01837757 https://hal.archives-ouvertes.fr/hal-01837757 Submitted on 28 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. FEMS Yeast Research, 15, 2015, fov067 doi: 10.1093/femsyr/fov067 Advance Access Publication Date: 23 July 2015 Minireview MINIREVIEW Diversity and adaptive evolution of Saccharomyces wine yeast: a review Souhir Marsit1,2,3 and Sylvie Dequin1,2,3,∗ 1INRA, UMR1083, SPO, F-34060 Montpellier, France, 2Montpellier SupAgro, UMR1083, SPO, F-34060 Montpellier, France and 3Montpellier University, UMR1083, SPO, F-34060 Montpellier, France ∗ Corresponding author: Institut national de la recherche agronomique, Unite´ mixte de recherche Sciences pour l’œnologie, 2 place Viala, Montpellier, 34060, France. Tel: +33-4-99-61-25-28; Fax: +33-4-99-61-28-57; E-mail: [email protected] One sentence summary: This review summarizes current knowledge and recent advances on the diversity and evolutionary history of Saccharomyces cerevisiae wine yeasts, focusing on the domestication fingerprints identified in these strains.