Forces in Biology - Cell and Developmental Mechanobiology and Its Implications in Disease
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Melanoma in the Eyes of Mechanobiology
fcell-08-00054 February 11, 2020 Time: 16:43 # 1 REVIEW published: 11 February 2020 doi: 10.3389/fcell.2020.00054 Melanoma in the Eyes of Mechanobiology M. Manuela Brás1,2,3, Manfred Radmacher4*, Susana R. Sousa1,2,5 and Pedro L. Granja1,2,3† 1 Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal, 2 Instituto de Engenharia Biomédica, Universidade do Porto, Porto, Portugal, 3 Faculdade de Engenharia, Universidade do Porto, Porto, Portugal, 4 Institute for Biophysics, University of Bremen, Bremen, Germany, 5 Instituto Superior de Engenharia do Porto, Instituto Politécnico do Porto, Porto, Portugal Skin is the largest organ of the human body with several important functions that can be impaired by injury, genetic or chronic diseases. Among all skin diseases, melanoma is one of the most severe, which can lead to death, due to metastization. Mechanotransduction has a crucial role for motility, invasion, adhesion and metastization processes, since it deals with the response of cells to physical forces. Signaling Edited by: pathways are important to understand how physical cues produced or mediated Shamik Sen, by the Extracellular Matrix (ECM), affect healthy and tumor cells. During these Indian Institute of Technology Bombay, India processes, several molecules in the nucleus and cytoplasm are activated. Melanocytes, Reviewed by: keratinocytes, fibroblasts and the ECM, play a crucial role in melanoma formation. This Zhizhan Gu, manuscript will address the synergy among melanocytes, keratinocytes, fibroblasts cells Dana-Farber Cancer Institute, United States and the ECM considering their mechanical contribution and relevance in this disease. Takashi Kato, Mechanical properties of melanoma cells can also be influenced by pigmentation, Johns Hopkins University, which can be associated with changes in stiffness. -
Quantitative Methodologies to Dissect Immune Cell Mechanobiology
cells Review Quantitative Methodologies to Dissect Immune Cell Mechanobiology Veronika Pfannenstill 1 , Aurélien Barbotin 1 , Huw Colin-York 1,* and Marco Fritzsche 1,2,* 1 Kennedy Institute for Rheumatology, University of Oxford, Roosevelt Drive, Oxford OX3 7LF, UK; [email protected] (V.P.); [email protected] (A.B.) 2 Rosalind Franklin Institute, Harwell Campus, Didcot OX11 0FA, UK * Correspondence: [email protected] (H.C.-Y.); [email protected] (M.F.) Abstract: Mechanobiology seeks to understand how cells integrate their biomechanics into their function and behavior. Unravelling the mechanisms underlying these mechanobiological processes is particularly important for immune cells in the context of the dynamic and complex tissue microen- vironment. However, it remains largely unknown how cellular mechanical force generation and mechanical properties are regulated and integrated by immune cells, primarily due to a profound lack of technologies with sufficient sensitivity to quantify immune cell mechanics. In this review, we discuss the biological significance of mechanics for immune cells across length and time scales, and highlight several experimental methodologies for quantifying the mechanics of immune cells. Finally, we discuss the importance of quantifying the appropriate mechanical readout to accelerate insights into the mechanobiology of the immune response. Keywords: mechanobiology; biomechanics; force; immune response; quantitative technology Citation: Pfannenstill, V.; Barbotin, A.; Colin-York, H.; Fritzsche, M. Quantitative Methodologies to Dissect 1. Introduction Immune Cell Mechanobiology. Cells The development of novel quantitative technologies and their application to out- 2021, 10, 851. https://doi.org/ standing scientific problems has often paved the way towards ground-breaking biological 10.3390/cells10040851 findings. -
Development of Virtual Screening and in Silico Biomarker Identification Model for Pharmaceutical Agents
DEVELOPMENT OF VIRTUAL SCREENING AND IN SILICO BIOMARKER IDENTIFICATION MODEL FOR PHARMACEUTICAL AGENTS ZHANG JINGXIAN NATIONAL UNIVERSITY OF SINGAPORE 2012 Development of Virtual Screening and In Silico Biomarker Identification Model for Pharmaceutical Agents ZHANG JINGXIAN (B.Sc. & M.Sc., Xiamen University) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF PHARMACY NATIONAL UNIVERSITY OF SINGAPORE 2012 Declaration Declaration I hereby declare that this thesis is my original work and it has been written by me in its entirety. I have duly acknowledged all the sources of information which have been used in the thesis This thesis has also not been submitted for any degree in any university previously. Zhang Jingxian Acknowledgements Acknowledgements First and foremost, I would like to express my sincere and deep gratitude to my supervisor, Professor Chen Yu Zong, who gives me with the excellent guidance and invaluable advices and suggestions throughout my PhD study in National University of Singapore. Prof. Chen gives me a lot help and encouragement in my research as well as job-hunting in the final year. His inspiration, enthusiasm and commitment to science research greatly encourage me to become research scientist. I would like to appreciate him and give me best wishes to him and his loving family. I am grateful to our BIDD group members for their insight suggestions and collaborations in my research work: Dr. Liu Xianghui, Dr. Ma Xiaohua, Dr. Jia Jia, Dr. Zhu Feng, Dr. Liu Xin, Dr. Shi Zhe, Mr. Han Bucong, Ms Wei Xiaona, Mr. Guo Yangfang, Mr. Tao Lin, Mr. Zhang Chen, Ms Qin Chu and other members. -
Mechanobiology of Migrating Cells from Basic Science to the Clinic
A COST Action CA15214 (EuroCellNet) Working Group Meeting Mechanobiology of Migrating Cells From Basic Science to the Clinic 1st – 2nd April 2019 Venue Department of Physics Rua Larga, University of Coimbra 2 Coimbra 2019 Monday, 1st April 09.45 - 10.00 WELCOME AND INTRODUCTION Keynote Speaker 10.00 – 10.40 M. Ángela Nieto, Instituto de Neurociencias (CSIC-UMH), Alicante, Spain “Epithelial plasticity in health and disease (the INs and OUTs of the EMT)” ECM and Cell Migration Session Chair: Nuno Saraiva 10.40 – 11.00 Florence Janody, University of Porto, Portugal “Computational modelling and experimental approaches identify a role of ECM stiffening in Src- induces EMT” 11.00 - 11.20 Juan Carlos Rodríguez-Manzaneque, GENYO, Granada, Spain “Relevance of ECM proteolytic remodelling for cell invasion and migration” 11.20 - 11.40 Rui Travasso, University of Coimbra, Portugal “Mathematical modelling of migrating cells and angiogenesis” 11.40 - 12.00 María José Oliveira, University of Porto, Portugal “Decellularized human colorectal cancer matrices as a tumor microenvironment biomimetic model” 12.00 – 14.00 Lunch Justiça e Paz, Couraça de Lisboa, 30 Keynote Speaker 14.00 - 14.40 Lino Ferreira, University of Coimbra, Portugal “Mechanical forces in vascular cell maturation and disease” 4 Coimbra 2019 Mechanotransduction and Cytoskeleton Session Chair: Ana Fernandes 14.40 - 15.00 Mirjana Liovic, Medical Center for Molecular Biology, Institute for Biochemistry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia “Cytoskeletal mutations -
Welcome to the 2018 Mechanobiology Symposium!
Welcome to the 2018 Mechanobiology Symposium! In the past few decades, striking progress in biology has come from quantitative understanding of two foundational areas of biology: genetics and biochemistry. However, to us, there is a clear third category: mechanobiology – that is, mechanical forces and the machinery that produces, senses and responds to them. Mechanobiology plays a role in how cells move, divide and organize themselves. Perhaps more surprisingly, research is revealing a role for mechanobiology in how cells communicate and determine their fate, how bacteria and viruses infect their hosts, how we develop into healthy organisms, and how it goes wrong in disease. Experimental tools to study mechanobiology are notoriously difficult to apply to the delicate, wet, salty, crowded, noisy, heterogeneous environment of living systems. Researchers capable of overcoming these challenges, marshaling the tools of physics, engineering, biology, medicine, mathematics and computing, will help establish biomechanics as a third pillar of biology, alongside genetics and biochemistry. In 2016, the Mechanobiology Symposium was held at UC San Diego. Entitled “Building the Mechanome”, this two-day meeting brought together biologists, computational scientists, mathematicians and physicists who think about different aspects of mechanobiology. Feedback from the attendees was uniformly positive, and UC Irvine offered to host the next meeting in 2018. As a natural next step, we entitle this meeting “The Mechanome in Action” and will highlight many biological functions that mechanobiology is helping elucidate. Mechanobiology, as a field, tends not to have a single center of mass. Instead, it flourishes in meetings like this one, at the interface of many disciplines. Critical to our ability to hold this meeting are the resources of four Centers based at UC Irvine: The Center for Complex Biological Systems, the Sue and Bill Gross Stem Cell Research Center, the Center for Cancer Systems Biology, and the Center for Multiscale Cell Fate. -
Integrated Micro/Nanoengineered Functional Biomaterials for Cell Mechanics and Mechanobiology: REVIEW a Materials Perspective
www.advmat.de www.MaterialsViews.com Integrated Micro/Nanoengineered Functional Biomaterials for Cell Mechanics and Mechanobiology: REVIEW A Materials Perspective Yue Shao and Jianping Fu * which actively signals to cells to regulate The rapid development of micro/nanoengineered functional biomaterials in their fate and function. The microenviron- the last two decades has empowered materials scientists and bioengineers mental factors, including cell-cell inter- to precisely control different aspects of the in vitro cell microenvironment. actions, soluble factors such as oxygen tension and growth factors, and adhesive Following a philosophy of reductionism, many studies using synthetic and biophysical interactions between functional biomaterials have revealed instructive roles of individual extra- cells and extracellular matrix (ECM), are cellular biophysical and biochemical cues in regulating cellular behaviors. all important for regulation of cellular Development of integrated micro/nanoengineered functional biomaterials behaviors. Cells and the surrounding to study complex and emergent biological phenomena has also thrived microenvironment can also dynamically infl uence each other during normal devel- rapidly in recent years, revealing adaptive and integrated cellular behaviors opment, tissue homeostasis and repair, closely relevant to human physiological and pathological conditions. Working and progression of diseases through their at the interface between materials science and engineering, biology, and reciprocal biochemical and biophysical medicine, we are now at the beginning of a great exploration using micro/ interactions. [ 1–6 ] Thus, a detailed appre- nanoengineered functional biomaterials for both fundamental biology study hension and understanding of cell-micro- and clinical and biomedical applications such as regenerative medicine and environment interactions is critical for both advancing basic biology knowledge drug screening. -
Modeling the Mechanobiology of Cancer Cell Migration Using 3D Biomimetic Hydrogels
gels Review Modeling the Mechanobiology of Cancer Cell Migration Using 3D Biomimetic Hydrogels Xabier Morales †, Iván Cortés-Domínguez † and Carlos Ortiz-de-Solorzano * IDISNA, Ciberonc and Solid Tumors and Biomarkers Program, Center for Applied Medical Research, University of Navarra, 31008 Pamplona, Spain; [email protected] (X.M.); [email protected] (I.C.-D.) * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: Understanding how cancer cells migrate, and how this migration is affected by the me- chanical and chemical composition of the extracellular matrix (ECM) is critical to investigate and possibly interfere with the metastatic process, which is responsible for most cancer-related deaths. In this article we review the state of the art about the use of hydrogel-based three-dimensional (3D) scaffolds as artificial platforms to model the mechanobiology of cancer cell migration. We start by briefly reviewing the concept and composition of the extracellular matrix (ECM) and the materials commonly used to recreate the cancerous ECM. Then we summarize the most relevant knowledge about the mechanobiology of cancer cell migration that has been obtained using 3D hydrogel scaf- folds, and relate those discoveries to what has been observed in the clinical management of solid tumors. Finally, we review some recent methodological developments, specifically the use of novel bioprinting techniques and microfluidics to create realistic hydrogel-based models of the cancer ECM, and some of their applications in the context of the study of cancer cell migration. Keywords: hydrogel; collagen; Matrigel; extracellular matrix; mechanobiology; amoeboid-mesenchymal transition; cancer; cell migration; microfluidic devices; bioprinting Citation: Morales, X.; Cortés-Domínguez, I.; Ortiz-de-Solorzano, C. -
A Novel Role for Cadherin-11
Mechanobiology of Cardiac Disease and Fibrosis: a Novel Role for Cadherin-11 By Alison Koelle Schroer Dissertation Submitted to the Faculty of the Graduate School of Vanderbilt University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biomedical Engineering December, 2016 Nashville, Tennessee Approved: W. David Merryman, Ph.D. John Wikswo, Ph.D. Michael Miga, Ph.D. Jeffrey Davidson, Ph.D. Antonis Hatzopoulos, Ph.D. Copyright © 2016 by Alison K Schroer All Rights Reserved ii ACKNOWLEDGEMENTS The heart has its reasons, of which reason knows nothing - Pascal I must acknowledge my coauthors on the manuscripts which have been adapted and included in this dissertation. First and foremost, my advisor Dave Merryman. Also Larisa Rhyzhova, Cyndi Clark, Hind Lal, Qinkun Zhang, Tom Force, John Wikswo, Veniamin Sidorov, Matthew Shotwell, Annabelle Manalo, and David Bader. I would also acknowledge Josh Bender and Claire Lafferty, undergraduate research assistants who assisted in the collection of some of the data included in this work. I would also like to acknowledge Meghan Bowler, Mark Vander Roest, Caleb Snider, Allison Price, and Jeffrey Davidson for their editorial comments on the work included in this dissertation. I would like to acknowledge my funding sources, especially the NSF and the AHA. Also, the ever wonderful Merryman Lab, members both past and present, who have been my comrades and friends throughout the last five years. Finally, I must acknowledge my family, my friends, and my God, without whom I never could have done all this. Keep your heart with all vigilance, for from it flow the springs of life. -
Cellular Mechanobiology of Glioblastoma Multiforme
Cellular Mechanobiology of Glioblastoma Multiforme by Theresa Ann Ulrich A dissertation submitted in partial satisfaction of the requirements of the degree of Joint Doctor of Philosophy with University of California, San Francisco in Bioengineering in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Sanjay Kumar, Chair Professor Mohammad Mofrad Professor Tejal Desai Professor Andrew Wurmser Spring 2011 Cellular Mechanobiology of Glioblastoma Multiforme © 2011 By Theresa Ann Ulrich Abstract Cellular Mechanobiology of Glioblastoma Multiforme by Theresa Ann Ulrich Joint Doctor of Philosophy in Bioengineering with University of California, San Francisco University of California, Berkeley Professor Sanjay Kumar, Chair The rapid progression of high-grade brain tumors is related to diffuse infiltration of single tumor cells into the surrounding brain parenchyma, a process that involves aberrant interactions between tumor cells and the extracellular matrix (ECM). Tremendous effort has been devoted to elucidating the genetic and biochemical underpinnings of these tumors; however, poor translation of candidate therapies from animal models to human patients has only increased the sense of urgency for the development of new approaches in both the laboratory and the clinic. Indeed, despite decades of extensive clinical and biological research, the life expectancy of patients with grade IV glioblastoma multiforme (GBM) brain tumors is still approximately one year at diagnosis. The work presented in this dissertation has approached this problem from a biophysical perspective, demonstrating that biomechanical cues from the ECM serve as regulators of key GBM tumor cell properties relevant to invasion in both two-dimensional (2D) and three-dimensional (3D) culture models. We first investigated the role of ECM rigidity in regulating the structure, migration, and proliferation of a panel of glioma cell lines on 2D fibronectin-coated polymeric ECM substrates of defined mechanical rigidity. -
Lighting up the Mechanome
Understanding the role of force, mechanics, and biological machinery—the “mechanome”—will open the way to new strategies for fighting disease. Lighting Up the Mechanome Matthew Lang Genomics and general “omics” approaches, such as proteomics, inter- actomics, and glycomics, among others, are powerful system-level tools in biology. All of these fields are supported by advances in instrumentation and computation, such as DNA sequencers and mass spectrometers, which were critical in “sequencing” the human genome. Revolutionary advances in biology that have harnessed the machinery of polymerases to copy DNA Matthew Lang is assistant professor, or used RNA interference to capture and turn off genes have also been criti- Department of Biological Engineer- cal to the development of these tools. Researchers in biophysics and bio- ing and Department of Mechanical mechanics have made significant advances in experimental methods, and the development of new microscopes has made higher resolution molecular- Engineering, Massachusetts Institute and cellular-scale measurements possible. of Technology. Despite these advances, however, no systems-level “omics” perspective— the “mechanome”—has been developed to describe the general role of force, mechanics, and machinery in biology. Like the genome, the mechanome promises to improve our understanding of biological machinery and ulti- mately open the way to new strategies and targets for fighting disease. Many disease processes are mechanical in nature. Malaria, which infects 500 million people and causes 2 million deaths each year, works through a number of mechanical processes, including parasite invasion of red blood cells (RBCs), increased RBC adhesions, and overall stiffening of RBCs. As the disease progresses, it impairs the ability of infected cells to squeeze The 12 BRIDGE through capillaries, ruptures RBC membranes, and Molecular Machinery 1 releases newly minted malaria parasites. -
Wang (2006) Mechanobiology of Tendon.Pdf
ARTICLE IN PRESS Journal of Biomechanics 39 (2006) 1563–1582 www.elsevier.com/locate/jbiomech www.JBiomech.com Review Mechanobiology of tendon James H.-C. Wangà MechanoBiology Laboratory, Departments of Orthopaedic Surgery, Bioengineering and Mechanical Engineering, University of Pittsburgh, 210 Lothrop St., BST, E1647, Pittsburgh, PA 15213, USA Accepted 11 May 2005 Abstract Tendons are able to respond to mechanical forces by altering their structure, composition, and mechanical properties—a process called tissue mechanical adaptation. The fact that mechanical adaptation is effected by cells in tendons is clearly understood; however, how cells sense mechanical forces and convert them into biochemical signals that ultimately lead to tendon adaptive physiological or pathological changes is not well understood. Mechanobiology is an interdisciplinary study that can enhance our understanding of mechanotransduction mechanisms at the tissue, cellular, and molecular levels. The purpose of this article is to provide an overview of tendon mechanobiology. The discussion begins with the mechanical forces acting on tendons in vivo, tendon structure and composition, and its mechanical properties. Then the tendon’s response to exercise, disuse, and overuse are presented, followed by a discussion of tendon healing and the role of mechanical loading and fibroblast contraction in tissue healing. Next, mechanobiological responses of tendon fibroblasts to repetitive mechanical loading conditions are presented, and major cellular mechanotransduction mechanisms are briefly reviewed. Finally, future research directions in tendon mechanobiology research are discussed. r 2005 Elsevier Ltd. All rights reserved. Keywords: Tendon; Mechanobiology; Mechanical adaptation; Tendon fibroblasts; Mechanotransduction Contents 1. Introduction . 1564 2. Tendon forces in vivo . 1564 3. Tendon structure, composition, and mechanical properties . -
Mechanobiology and Mechanics in Cardiovascular Disease
obiolog Bae, J Microbiol Pathol 2018, 2:1 icr y & M P f a o t l h a o n l o r g u y o J Journal of Microbiology and Pathology EditorialResearch Article OpenOpen Access Access Mechanobiology and Mechanics in Cardiovascular Disease Yongho Bae* Department of Pathology and Anatomical Sciences, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, State University of New York, USA Cardiovascular disease is the main cause of death globally. Arterial controls vascular smooth muscle cell function and to determine how stiffening significantly contributes to the progression of cardiovascular pathological arterial stiffness disrupts that control which contributes disease [1-3] including atherosclerosis, coronary heart disease, to the progression of cardiovascular disease. These research findings hypertension and stroke. The molecular mechanisms governing will be significantly relevant for clinical revascularization procedures arterial stiffening and the phenotypic changes in vascular smooth (angioplasty and stenting), where the risk of restenosis attributable to muscle cells associated with the stiffening process are critical areas in neointimal formation may be mitigated by targeting certain mechano cardiovascular biology, mechanics and pathology. Evidence suggests sensitive proteins to maintain lumen diameter, vessel function, and that arterial stiffness can drive aberrant vascular smooth muscle cell physiological arterial stiffness. Thus, current and future work by dedifferentiation, migration, and proliferation within the vessel wall researchers may lead to new therapies for treating cardiovascular [4-9]. Yet, the underlying mechanisms regulating arterial stiffening and disease. the molecular changes within vascular smooth muscle cells associated References with the stiffening process remain unclear. 1. Mitchell GF, Hwang SJ, Vasan RS, Larson MG, Pencina MJ, et al.