Computer Vision with Allegro Common Lisp and the VIGRA Library Using VIGRACL
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The Machine That Builds Itself: How the Strengths of Lisp Family
Khomtchouk et al. OPINION NOTE The Machine that Builds Itself: How the Strengths of Lisp Family Languages Facilitate Building Complex and Flexible Bioinformatic Models Bohdan B. Khomtchouk1*, Edmund Weitz2 and Claes Wahlestedt1 *Correspondence: [email protected] Abstract 1Center for Therapeutic Innovation and Department of We address the need for expanding the presence of the Lisp family of Psychiatry and Behavioral programming languages in bioinformatics and computational biology research. Sciences, University of Miami Languages of this family, like Common Lisp, Scheme, or Clojure, facilitate the Miller School of Medicine, 1120 NW 14th ST, Miami, FL, USA creation of powerful and flexible software models that are required for complex 33136 and rapidly evolving domains like biology. We will point out several important key Full list of author information is features that distinguish languages of the Lisp family from other programming available at the end of the article languages and we will explain how these features can aid researchers in becoming more productive and creating better code. We will also show how these features make these languages ideal tools for artificial intelligence and machine learning applications. We will specifically stress the advantages of domain-specific languages (DSL): languages which are specialized to a particular area and thus not only facilitate easier research problem formulation, but also aid in the establishment of standards and best programming practices as applied to the specific research field at hand. DSLs are particularly easy to build in Common Lisp, the most comprehensive Lisp dialect, which is commonly referred to as the “programmable programming language.” We are convinced that Lisp grants programmers unprecedented power to build increasingly sophisticated artificial intelligence systems that may ultimately transform machine learning and AI research in bioinformatics and computational biology. -
Common Lispworks User Guide
LispWorks® for the Windows® Operating System Common LispWorks User Guide Version 5.1 Copyright and Trademarks Common LispWorks User Guide (Windows version) Version 5.1 February 2008 Copyright © 2008 by LispWorks Ltd. All Rights Reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior written permission of LispWorks Ltd. The information in this publication is provided for information only, is subject to change without notice, and should not be construed as a commitment by LispWorks Ltd. LispWorks Ltd assumes no responsibility or liability for any errors or inaccuracies that may appear in this publication. The software described in this book is furnished under license and may only be used or copied in accordance with the terms of that license. LispWorks and KnowledgeWorks are registered trademarks of LispWorks Ltd. Adobe and PostScript are registered trademarks of Adobe Systems Incorporated. Other brand or product names are the registered trade- marks or trademarks of their respective holders. The code for walker.lisp and compute-combination-points is excerpted with permission from PCL, Copyright © 1985, 1986, 1987, 1988 Xerox Corporation. The XP Pretty Printer bears the following copyright notice, which applies to the parts of LispWorks derived therefrom: Copyright © 1989 by the Massachusetts Institute of Technology, Cambridge, Massachusetts. Permission to use, copy, modify, and distribute this software and its documentation for any purpose and without fee is hereby granted, pro- vided that this copyright and permission notice appear in all copies and supporting documentation, and that the name of M.I.T. -
Omnipresent and Low-Overhead Application Debugging
Omnipresent and low-overhead application debugging Robert Strandh [email protected] LaBRI, University of Bordeaux Talence, France ABSTRACT application programmers as opposed to system programmers. The state of the art in application debugging in free Common The difference, in the context of this paper, is that the tech- Lisp implementations leaves much to be desired. In many niques that we suggest are not adapted to debugging the cases, only a backtrace inspector is provided, allowing the system itself, such as the compiler. Instead, throughout this application programmer to examine the control stack when paper, we assume that, as far as the application programmer an unhandled error is signaled. Most such implementations do is concerned, the semantics of the code generated by the not allow the programmer to set breakpoints (unconditional compiler corresponds to that of the source code. or conditional), nor to step the program after it has stopped. In this paper, we are mainly concerned with Common Furthermore, even debugging tools such as tracing or man- Lisp [1] implementations distributed as so-called FLOSS, i.e., ually calling break are typically very limited in that they do \Free, Libre, and Open Source Software". While some such not allow the programmer to trace or break in important sys- implementations are excellent in terms of the quality of the tem functions such as make-instance or shared-initialize, code that the compiler generates, most leave much to be simply because these tools impact all callers, including those desired when it comes to debugging tools available to the of the system itself, such as the compiler. -
The Evolution of Lisp
1 The Evolution of Lisp Guy L. Steele Jr. Richard P. Gabriel Thinking Machines Corporation Lucid, Inc. 245 First Street 707 Laurel Street Cambridge, Massachusetts 02142 Menlo Park, California 94025 Phone: (617) 234-2860 Phone: (415) 329-8400 FAX: (617) 243-4444 FAX: (415) 329-8480 E-mail: [email protected] E-mail: [email protected] Abstract Lisp is the world’s greatest programming language—or so its proponents think. The structure of Lisp makes it easy to extend the language or even to implement entirely new dialects without starting from scratch. Overall, the evolution of Lisp has been guided more by institutional rivalry, one-upsmanship, and the glee born of technical cleverness that is characteristic of the “hacker culture” than by sober assessments of technical requirements. Nevertheless this process has eventually produced both an industrial- strength programming language, messy but powerful, and a technically pure dialect, small but powerful, that is suitable for use by programming-language theoreticians. We pick up where McCarthy’s paper in the first HOPL conference left off. We trace the development chronologically from the era of the PDP-6, through the heyday of Interlisp and MacLisp, past the ascension and decline of special purpose Lisp machines, to the present era of standardization activities. We then examine the technical evolution of a few representative language features, including both some notable successes and some notable failures, that illuminate design issues that distinguish Lisp from other programming languages. We also discuss the use of Lisp as a laboratory for designing other programming languages. We conclude with some reflections on the forces that have driven the evolution of Lisp. -
Allegro CL User Guide
Allegro CL User Guide Volume 1 (of 2) version 4.3 March, 1996 Copyright and other notices: This is revision 6 of this manual. This manual has Franz Inc. document number D-U-00-000-01-60320-1-6. Copyright 1985-1996 by Franz Inc. All rights reserved. No part of this pub- lication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means electronic, mechanical, by photocopying or recording, or otherwise, without the prior and explicit written permission of Franz incorpo- rated. Restricted rights legend: Use, duplication, and disclosure by the United States Government are subject to Restricted Rights for Commercial Software devel- oped at private expense as specified in DOD FAR 52.227-7013 (c) (1) (ii). Allegro CL and Allegro Composer are registered trademarks of Franz Inc. Allegro Common Windows, Allegro Presto, Allegro Runtime, and Allegro Matrix are trademarks of Franz inc. Unix is a trademark of AT&T. The Allegro CL software as provided may contain material copyright Xerox Corp. and the Open Systems Foundation. All such material is used and distrib- uted with permission. Other, uncopyrighted material originally developed at MIT and at CMU is also included. Appendix B is a reproduction of chapters 5 and 6 of The Art of the Metaobject Protocol by G. Kiczales, J. des Rivieres, and D. Bobrow. All this material is used with permission and we thank the authors and their publishers for letting us reproduce their material. Contents Volume 1 Preface 1 Introduction 1.1 The language 1-1 1.2 History 1-1 1.3 Format -
ESA: a CLIM Library for Writing Emacs-Style Applications
ESA: A CLIM Library for Writing Emacs-Style Applications Robert Strandh Troels Henriksen LaBRI, Université Bordeaux 1 DIKU, University of Copenhagen 351, Cours de la Libération Universitetsparken 1, Copenhagen 33405 Talence Cedex [email protected] France [email protected] David Murray Christophe Rhodes ADMurray Associates Goldsmiths, University of London 10 Rue Carrier Belleuse, 75015 Paris New Cross Road, London, SE14 6NW [email protected] [email protected] ABSTRACT style applications. The central distinguishing feature of an We describe ESA (for Emacs-Style Application), a library Emacs-style application, for our purposes, is that it uses for writing applications with an Emacs look-and-feel within short sequences of keystrokes as the default method of in- the Common Lisp Interface Manager. The ESA library voking commands, and only occasionally requires the user to takes advantage of the layered design of CLIM to provide a type the full name of the command in a minibuffer. A spe- command loop that uses Emacs-style multi-keystroke com- cial keystroke (M-x) is used to invoke commands by name. mand invocation. ESA supplies other functionality for writ- This interaction style is substantially different from the one ing such applications such as a minibuffer for invoking ex- provided by CLIM by default, and therefore required us to tended commands and for supplying command arguments, write a different CLIM top level. Fortunately, CLIM was Emacs-style keyboard macros and numeric arguments, file designed to make this not only possible but fairly straight- and buffer management, and more. ESA is currently used forward, as the implementation of a replacement top level in two major CLIM applications: the Climacs text editor can build on the protocol layers beneath, just as the default (and the Drei text gadget integrated with the McCLIM im- top level is built. -
S Allegro Common Lisp Foreign Function Interface
Please do not remove this page Extensions to the Franz, Inc.'s Allegro Common Lisp foreign function interface Keane, John https://scholarship.libraries.rutgers.edu/discovery/delivery/01RUT_INST:ResearchRepository/12643408560004646?l#13643533500004646 Keane, J. (1996). Extensions to the Franz, Inc.’s Allegro Common Lisp foreign function interface. Rutgers University. https://doi.org/10.7282/t3-pqns-7h57 This work is protected by copyright. You are free to use this resource, with proper attribution, for research and educational purposes. Other uses, such as reproduction or publication, may require the permission of the copyright holder. Downloaded On 2021/09/29 22:58:32 -0400 Extensions to the Franz Incs Allegro Common Lisp Foreign Function Interface John Keane Department of Computer Science Rutgers University New Brunswick NJ keanecsrutgersedu January Abstract As provided by Franz Inc the foreign function interface of Allegro Com mon Lisp has a number of limitations This pap er describ es extensions to the interface that facilitate the inclusion of C and Fortran co de into Common Lisp systems In particular these extensions make it easy to utilize libraries of numerical subroutines such as those from Numerical Recip es in C from within ACL including those routines that take functions as arguments A mechanism for creating Lisplike dynamic runtime closures for C routines is also describ ed Acknowledgments The research presented in this do cument is supp orted in part by NASA grants NCC and NAG This research is also part of the Rutgers based -
Threading and GUI Issues for R
Threading and GUI Issues for R Luke Tierney School of Statistics University of Minnesota March 5, 2001 Contents 1 Introduction 2 2 Concurrency and Parallelism 2 3 Concurrency and Dynamic State 3 3.1 Options Settings . 3 3.2 User Defined Options . 5 3.3 Devices and Par Settings . 5 3.4 Standard Connections . 6 3.5 The Context Stack . 6 3.5.1 Synchronization . 6 4 GUI Events And Blocking IO 6 4.1 UNIX Issues . 7 4.2 Win32 Issues . 7 4.3 Classic MacOS Issues . 8 4.4 Implementations To Consider . 8 4.5 A Note On Java . 8 4.6 A Strategy for GUI/IO Management . 9 4.7 A Sample Implementation . 9 5 Threads and GUI’s 10 6 Threading Design Space 11 6.1 Parallelism Through HL Threads: The MXM Options . 12 6.2 Light-Weight Threads: The XMX Options . 12 6.3 Multiple OS Threads Running One At A Time: MSS . 14 6.4 Variations on OS Threads . 14 6.5 SMS or MXS: Which To Choose? . 14 7 Light-Weight Thread Implementation 14 1 March 5, 2001 2 8 Other Issues 15 8.1 High-Level GUI Interfaces . 16 8.2 High-Level Thread Interfaces . 16 8.3 High-Level Streams Interfaces . 16 8.4 Completely Random Stuff . 16 1 Introduction This document collects some random thoughts on runtime issues relating to concurrency, threads, GUI’s and the like. Some of this is extracted from recent R-core email threads. I’ve tried to provide lots of references that might be of use. -
ESA: a CLIM Library for Writing Emacs-Style Applications
ESA: A CLIM Library for Writing Emacs-Style Applications Robert Strandh Troels Henriksen LaBRI, Université Bordeaux 1 DIKU, University of Copenhagen 351, Cours de la Libération Universitetsparken 1, Copenhagen 33405 Talence Cedex [email protected] France [email protected] David Murray Christophe Rhodes ADMurray Associates Goldsmiths, University of London 10 Rue Carrier Belleuse, 75015 Paris New Cross Road, London, SE14 6NW [email protected] [email protected] ABSTRACT style applications. The central distinguishing feature of an We describe ESA (for Emacs-Style Application), a library Emacs-style application, for our purposes, is that it uses for writing applications with an Emacs look-and-feel within short sequences of keystrokes as the default method of in- the Common Lisp Interface Manager. The ESA library voking commands, and only occasionally requires the user to takes advantage of the layered design of CLIM to provide a type the full name of the command in a minibuffer. A spe- command loop that uses Emacs-style multi-keystroke com- cial keystroke (M-x) is used to invoke commands by name. mand invocation. ESA supplies other functionality for writ- This interaction style is substantially different from the one ing such applications such as a minibuffer for invoking ex- provided by CLIM by default, and therefore required us to tended commands and for supplying command arguments, write a different CLIM top level. Fortunately, CLIM was Emacs-style keyboard macros and numeric arguments, file designed to make this not only possible but fairly straight- and buffer management, and more. ESA is currently used forward, as the implementation of a replacement top level in two major CLIM applications: the Climacs text editor can build on the protocol layers beneath, just as the default (and the Drei text gadget integrated with the McCLIM im- top level is built. -
A Python Implementation for Racket
PyonR: A Python Implementation for Racket Pedro Alexandre Henriques Palma Ramos Thesis to obtain the Master of Science Degree in Information Systems and Computer Engineering Supervisor: António Paulo Teles de Menezes Correia Leitão Examination Committee Chairperson: Prof. Dr. José Manuel da Costa Alves Marques Supervisor: Prof. Dr. António Paulo Teles de Menezes Correia Leitão Member of the Committee: Prof. Dr. João Coelho Garcia October 2014 ii Agradecimentos Agradec¸o... Em primeiro lugar ao Prof. Antonio´ Leitao,˜ por me ter dado a oportunidade de participar no projecto Rosetta com esta tese de mestrado, por todos os sabios´ conselhos e pelos momentos de discussao˜ e elucidac¸ao˜ que se proporcionaram ao longo deste trabalho. Aos meus pais excepcionais e a` minha mana preferida, por me terem aturado e suportado ao longo destes quase 23 anos e sobretudo pelo incondicional apoio durante estes 5 anos de formac¸ao˜ superior. Ao pessoal do Grupo de Arquitectura e Computac¸ao˜ (Hugo Correia, Sara Proenc¸a, Francisco Freire, Pedro Alfaiate, Bruno Ferreira, Guilherme Ferreira, Inesˆ Caetano e Carmo Cardoso), por todas as sug- estoes˜ e pelo inestimavel´ feedback em artigos e apresentac¸oes.˜ Aos amigos em Tomar (Rodrigo Carrao,˜ Hugo Matos, Andre´ Marques e Rui Santos) e em Lisboa (Diogo da Silva, Nuno Silva, Pedro Engana, Kaguedes, Clara Paiva e Odemira), por terem estado pre- sentes, duma forma ou doutra, nos essenciais momentos de lazer. A` Fundac¸ao˜ para a Cienciaˆ e Tecnologia (FCT) e ao INESC-ID pelo financiamento e acolhimento atraves´ da atribuic¸ao˜ de uma bolsa de investigac¸ao˜ no ambitoˆ dos contratos Pest-OE/EEI/LA0021/2013 e PTDC/ATP-AQI/5224/2012. -
ASDF 3, Or Why Lisp Is Now an Acceptable Scripting Language (Extended Version)
ASDF 3, or Why Lisp is Now an Acceptable Scripting Language (Extended version) François-René Rideau Google [email protected] Abstract libraries, or network services; one can scale them into large, main- ASDF, the de facto standard build system for Common Lisp, has tainable and modular systems; and one can make those new ser- been vastly improved between 2009 and 2014. These and other im- vices available to other programs via the command-line as well as provements finally bring Common Lisp up to par with "scripting via network protocols, etc. languages" in terms of ease of writing and deploying portable code The last barrier to making that possible was the lack of a that can access and "glue" together functionality from the underly- portable way to build and deploy code so a same script can run ing system or external programs. "Scripts" can thus be written in unmodified for many users on one or many machines using one or Common Lisp, and take advantage of its expressive power, well- many different compilers. This was solved by ASDF 3. defined semantics, and efficient implementations. We describe the ASDF has been the de facto standard build system for portable most salient improvements in ASDF and how they enable previ- CL software since shortly after its release by Dan Barlow in 2002 ously difficult and portably impossible uses of the programming (Barlow 2004). The purpose of a build system is to enable divi- language. We discuss past and future challenges in improving this sion of labor in software development: source code is organized key piece of software infrastructure, and what approaches did or in separately-developed components that depend on other compo- didn’t work in bringing change to the Common Lisp community. -
Commonloops Merging Lisp and Object-Oriented Programming Daniel G
CommonLoops Merging Lisp and Object-Oriented Programming Daniel G. Bobrow, Kenneth Kahn, Gregor Kiczales, Larry Masinter, Mark Stefik, and Frank Zdybel Xerox Palo Alto Research Center Palo Alto, California 94304 CommonLoops blends object-oriented programming Within the procedure-oriented paradigm, Lisp smoothly and tightly with the procedure-oriented provides an important approach for factoring design of Lisp. Functions and methods are combined programs that is'different from common practice in in a more general abstraction. Message passing is object-oriented programming. In this paper we inuoked via normal Lisp function call. Methods are present the linguistic mechanisms that we have viewed as partial descriptions of procedures. Lisp data developed for integrating these styles. We argue that types are integrated with object classes. With these the unification results in something greater than the integrations, it is easy to incrementally move a program sum of the parts, that is, that the mechanisms needed between the procedure and object -oriented styles. for integrating object-oriented and procedure-oriented approaches give CommonLoops surprising strength. One of the most important properties of CommonLoops is its extenswe use of meta-objects. We discuss three We describe a smooth integration of these ideas that kinds of meta-objects: objects for classes, objects for can work efficiently in Lisp systems implemented on a methods, and objects for discriminators. We argue that wide variety of machines. We chose the Common Lisp these meta-objects make practical both efficient dialect as a base on which to bui|d CommonLoops (a implementation and experimentation with new ideas Common Lisp Object-Oriented Programming System).