Activity of Linezolid Against Anaerobic Bacteria
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The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio In
microorganisms Review The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease Spase Stojanov 1,2, Aleš Berlec 1,2 and Borut Štrukelj 1,2,* 1 Faculty of Pharmacy, University of Ljubljana, SI-1000 Ljubljana, Slovenia; [email protected] (S.S.); [email protected] (A.B.) 2 Department of Biotechnology, Jožef Stefan Institute, SI-1000 Ljubljana, Slovenia * Correspondence: borut.strukelj@ffa.uni-lj.si Received: 16 September 2020; Accepted: 31 October 2020; Published: 1 November 2020 Abstract: The two most important bacterial phyla in the gastrointestinal tract, Firmicutes and Bacteroidetes, have gained much attention in recent years. The Firmicutes/Bacteroidetes (F/B) ratio is widely accepted to have an important influence in maintaining normal intestinal homeostasis. Increased or decreased F/B ratio is regarded as dysbiosis, whereby the former is usually observed with obesity, and the latter with inflammatory bowel disease (IBD). Probiotics as live microorganisms can confer health benefits to the host when administered in adequate amounts. There is considerable evidence of their nutritional and immunosuppressive properties including reports that elucidate the association of probiotics with the F/B ratio, obesity, and IBD. Orally administered probiotics can contribute to the restoration of dysbiotic microbiota and to the prevention of obesity or IBD. However, as the effects of different probiotics on the F/B ratio differ, selecting the appropriate species or mixture is crucial. The most commonly tested probiotics for modifying the F/B ratio and treating obesity and IBD are from the genus Lactobacillus. In this paper, we review the effects of probiotics on the F/B ratio that lead to weight loss or immunosuppression. -
Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis
International Journal of Molecular Sciences Review Fatty Acid Diets: Regulation of Gut Microbiota Composition and Obesity and Its Related Metabolic Dysbiosis David Johane Machate 1, Priscila Silva Figueiredo 2 , Gabriela Marcelino 2 , Rita de Cássia Avellaneda Guimarães 2,*, Priscila Aiko Hiane 2 , Danielle Bogo 2, Verônica Assalin Zorgetto Pinheiro 2, Lincoln Carlos Silva de Oliveira 3 and Arnildo Pott 1 1 Graduate Program in Biotechnology and Biodiversity in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] (D.J.M.); [email protected] (A.P.) 2 Graduate Program in Health and Development in the Central-West Region of Brazil, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; pri.fi[email protected] (P.S.F.); [email protected] (G.M.); [email protected] (P.A.H.); [email protected] (D.B.); [email protected] (V.A.Z.P.) 3 Chemistry Institute, Federal University of Mato Grosso do Sul, Campo Grande 79079-900, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-67-3345-7416 Received: 9 March 2020; Accepted: 27 March 2020; Published: 8 June 2020 Abstract: Long-term high-fat dietary intake plays a crucial role in the composition of gut microbiota in animal models and human subjects, which affect directly short-chain fatty acid (SCFA) production and host health. This review aims to highlight the interplay of fatty acid (FA) intake and gut microbiota composition and its interaction with hosts in health promotion and obesity prevention and its related metabolic dysbiosis. -
Biofire Blood Culture Identification System (BCID) Fact Sheet
BioFire Blood Culture Identification System (BCID) Fact Sheet What is BioFire BioFire BCID is a multiplex polymerase chain reaction (PCR) test designed to BCID? identify 24 different microorganism targets and three antibiotic resistance genes from positive blood culture bottles. What is the purpose The purpose of BCID is to rapidly identify common microorganisms and of BCID? antibiotic resistance genes from positive blood cultures so that antimicrobial therapy can be quickly optimized by the physician and the antibiotic stewardship pharmacist. It is anticipated that this will result in improved patient outcomes, decreased length of stay, improved antibiotic stewardship, and decreased costs. When will BCID be BCID is performed on all initially positive blood cultures after the gram stain is routinely performed and reported. performed? When will BCID not For blood cultures on the same patient that subsequently become positive with be routinely a microorganism showing the same morphology as the initial positive blood performed? culture, BCID will not be performed. BCID will not be performed on positive blood cultures with gram positive bacilli unless Listeria is suspected. BCID will not be performed on blood culture bottles > 8 hours after becoming positive. BCID will not be performed between 10PM-7AM on weekdays and 2PM-7AM on weekends. BCID will not be performed for clinics that have specifically opted out of testing. How soon will BCID After the blood culture becomes positive and the gram stain is performed and results be available? reported, the bottle will be sent to the core Microbiology lab by routine courier. BCID testing will then be performed. It is anticipated that total turnaround time will generally be 2-3 hours after the gram stain is reported. -
Bacteroides Fragilis Group Is on the Fast Track to Resistance
antibiotics Article Surveillance of Antimicrobial Susceptibility of Anaerobe Clinical Isolates in Southeast Austria: Bacteroides fragilis Group Is on the Fast Track to Resistance Elisabeth König 1,2, Hans P. Ziegler 1, Julia Tribus 1, Andrea J. Grisold 1 , Gebhard Feierl 1 and Eva Leitner 1,* 1 Diagnostic & Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, A 8010 Graz, Austria; [email protected] (E.K.); [email protected] (H.P.Z.); [email protected] (J.T.); [email protected] (A.J.G.); [email protected] (G.F.) 2 Section of Infectious Diseases and Tropical Medicine, Department of Internal Medicine, Medical University of Graz, A 8010 Graz, Austria * Correspondence: [email protected] Abstract: Anaerobic bacteria play an important role in human infections. Bacteroides spp. are some of the 15 most common pathogens causing nosocomial infections. We present antimicrobial susceptibility testing (AST) results of 114 Gram-positive anaerobic isolates and 110 Bacteroides-fragilis- group-isolates (BFGI). Resistance profiles were determined by MIC gradient testing. Furthermore, we performed disk diffusion testing of BFGI and compared the results of the two methods. Within Gram-positive anaerobes, the highest resistance rates were found for clindamycin and moxifloxacin Citation: König, E.; Ziegler, H.P.; (21.9% and 16.7%, respectively), and resistance for beta-lactams and metronidazole was low (<1%). Tribus, J.; Grisold, A.J.; Feierl, G.; For BFGI, the highest resistance rates were also detected for clindamycin and moxifloxacin (50.9% and Leitner, E. Surveillance of 36.4%, respectively). Resistance rates for piperacillin/tazobactam and amoxicillin/clavulanic acid Antimicrobial Susceptibility of were 10% and 7.3%, respectively. -
Table 3. Distribution of Tetracycline Resistance Genes Among Gram-Positive Bacteria, Mycobacterium, Mycoplasma, Nocardia, Streptomyces and Ureaplasma Modified Sept
Table 3. Distribution of tetracycline resistance genes among Gram-positive bacteria, Mycobacterium, Mycoplasma, Nocardia, Streptomyces and Ureaplasma Modified Sept. 27, 2021 [n=58 genera] Originally modified from MMBR 2001; 65:232-260 with permission from ASM Journals One Determinant Two Determinants Three or More Determinants n=27 n=7 n=22 k Abiotrophia tet(M) Arthrobacter tet(33)(M) Actinomyces tet(L)(M)(W) Afipia tet(M) Gardnerella tet(M)(Q) Aerococcus tet(M)(O)(58)(61) o Amycolatopsis tet(M) Gemella tet(M)(O) Bacillus tet(K)(L)(M)(O)ao(T)ao(W)(39)m(42)I (45)atotr(A)L Anaerococcus tet(M)g Granulicatella tet(M)(O) Bifidobacterium a, w tet(L)(M)(O)(W) Bacterionema tet(M) Lactococcus tet(M)(S) Bhargavaea tet(L)ac(M)(45)aa ar Brachybacterium tet(M)k Mobiluncusa tet(O)(Q) Clostridiuma,f tet(K)(L)(M)(O)(P)(Q)(W)(36)(40)j(44)p(X) Catenibacteriuma tet(M) Savagea tet(L)(M) Clostridioidesat tet(L)(P)(W)(40) Cellulosimicrobium tet(39)m Corynebacterium tet(M)(Z)(33)(W)q (39)ak Cottaibacterium tet(M) Enterococcus tet(K)(L)(M)(O)(S)(T)(U)(58)ad(61)aq Cutibacterium tet(W)aq Eubacteriuma tet(K)(M)(O)(Q)(32) Erysipelothrix tet(M) Lactobacillusf tet(K)(L)(M)(O)(Q)(S)(W)(Z)(36)am Finegoldia tet(M)g Listeria tet(K)(L)(M)(S)AB(46)ag Geobacillus tet(L) Microbacterium tet(M)(O)ae(42)I Helcococcus tet(M)ah Mycobacteriumc tet(K)(L)(M)(O)t(V)arotr(A)(B) Leifsonia tet(O)t Nocardia tet(K)(L)(M)ai (O) ai Lysinibacillus tet(39)m Paenibacillus tet(L)(M)(O)t(42)i Micrococcus tet(42) Peptostreptococcusa tet(K)(L)(M)(O)(Q) Mycoplasmab tet(M) Sporosarcina tet(K)(L)ac(M)n -
Diarrhea Predominant-Irritable Bowel Syndrome (IBS-D): Effects of Different Nutritional Patterns on Intestinal Dysbiosis and Symptoms
nutrients Review Diarrhea Predominant-Irritable Bowel Syndrome (IBS-D): Effects of Different Nutritional Patterns on Intestinal Dysbiosis and Symptoms Annamaria Altomare 1,2 , Claudia Di Rosa 2,*, Elena Imperia 2, Sara Emerenziani 1, Michele Cicala 1 and Michele Pier Luca Guarino 1 1 Gastroenterology Unit, Campus Bio-Medico University of Rome, Via Álvaro del Portillo 21, 00128 Rome, Italy; [email protected] (A.A.); [email protected] (S.E.); [email protected] (M.C.); [email protected] (M.P.L.G.) 2 Unit of Food Science and Human Nutrition, Campus Bio-Medico University of Rome, Via Álvaro del Portillo 21, 00128 Rome, Italy; [email protected] * Correspondence: [email protected] Abstract: Irritable Bowel Syndrome (IBS) is a chronic functional gastrointestinal disorder charac- terized by abdominal pain associated with defecation or a change in bowel habits. Gut microbiota, which acts as a real organ with well-defined functions, is in a mutualistic relationship with the host, harvesting additional energy and nutrients from the diet and protecting the host from pathogens; specific alterations in its composition seem to play a crucial role in IBS pathophysiology. It is well known that diet can significantly modulate the intestinal microbiota profile but it is less known how different nutritional approach effective in IBS patients, such as the low-FODMAP diet, could be Citation: Altomare, A.; Di Rosa, C.; responsible of intestinal microbiota changes, thus influencing the presence of gastrointestinal (GI) Imperia, E.; Emerenziani, S.; Cicala, symptoms. The aim of this review was to explore the effects of different nutritional protocols (e.g., M.; Guarino, M.P.L. -
Identification and Antimicrobial Susceptibility Testing of Anaerobic
antibiotics Review Identification and Antimicrobial Susceptibility Testing of Anaerobic Bacteria: Rubik’s Cube of Clinical Microbiology? Márió Gajdács 1,*, Gabriella Spengler 1 and Edit Urbán 2 1 Department of Medical Microbiology and Immunobiology, Faculty of Medicine, University of Szeged, 6720 Szeged, Hungary; [email protected] 2 Institute of Clinical Microbiology, Faculty of Medicine, University of Szeged, 6725 Szeged, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-62-342-843 Academic Editor: Leonard Amaral Received: 28 September 2017; Accepted: 3 November 2017; Published: 7 November 2017 Abstract: Anaerobic bacteria have pivotal roles in the microbiota of humans and they are significant infectious agents involved in many pathological processes, both in immunocompetent and immunocompromised individuals. Their isolation, cultivation and correct identification differs significantly from the workup of aerobic species, although the use of new technologies (e.g., matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, whole genome sequencing) changed anaerobic diagnostics dramatically. In the past, antimicrobial susceptibility of these microorganisms showed predictable patterns and empirical therapy could be safely administered but recently a steady and clear increase in the resistance for several important drugs (β-lactams, clindamycin) has been observed worldwide. For this reason, antimicrobial susceptibility testing of anaerobic isolates for surveillance -
(BCID) Results Are “Not Detected”
Interpretation of Positive Blood Cultures When PCR Blood Culture Identification (BCID) Results are “Not Detected” Nebraska Medicine currently uses a multi-plex PCR-based blood culture identification (BCID) system that is able to identify 19 potential pathogens growing in blood culture. BCID generally detects over 90% of the most common causative agents in bloodstream infections; however, when microbes not included on the panel are present in a blood culture, it returns a result of “Not Detected.” This document aims to provide guidance in these scenarios supported by data collected at Nebraska Medicine from January 2018 to August 2019. Table 1: Recommendations for treatment of patients with blood cultures growing organisms not detected on BCID Gram Stain/Preliminary Likely Organism (% total BCID negative)* Recommended Treatment Culture Result Gram-positive: Aerobe Micrococcus sp. (18.1%) (most can also grow in Coagulase-negative Staphylococcus (9.3%) None anaerobic bottles) Diphtheroids (7%) None Peptostreptococcus sp. (4.4%) If therapy is desired: Anaerobe bottle only Lactobacillus sp. (2.6%) Metronidazole 500 mg PO q8h Clostridium sp. (2.6%) OR Penicillin G 4 million units IV q4h Gram-negative: Aerobe Acinetobacter sp. (1.8%) (most can also grow in Stenotrophomonas maltophilia (1.6%) Levofloxacin 750 mg IV/PO q24h anaerobic bottles) Pseudomonas fluorescens-putida group (1%) Bacteroides fragilis group (9.3%) Anaerobe bottle only Metronidazole 500 mg IV/PO q8h Fusobacterium sp. (4.7%) *A full list of isolated organisms can be found below in Table 2 Orange text = Cocci, Blue text = Bacilli (rods) Gram-Positives When BCID results as “Not Detected” but there is microbial growth, the organism is most frequently gram-positive (71%). -
790 Increase in Bacteroides/Firmicutes Ratio After Early-Life Repeated Administration of Cefixime In
ORIGINAL ARTICLE Bali Medical Journal (Bali Med J) 2017, Volume 6, Number 3: 368-371 P-ISSN.2089-1180, E-ISSN.2302-2914 Increase in bacteroides/firmicutes ratio after ORIGINAL ARTICLE early-life repeated administration of Cefixime in Rat CrossMark Doi: http://dx.doi.org/10.15562/bmj.v6i3.790 Komang Januartha Putra Pinatih,1* Ketut Suastika,2 I Dewa Made Sukrama,1 I Nengah Sujaya3 Published by DiscoverSys Volume No.: 6 ABSTRACT The antibiotic administration could potentially to affects metabolism group. Both groups were transplanted orally with feces from 7-months and physiology by altering the gut microbiota composition and old infant boy prior to antibiotic administration. Cefixime group was Issue: 3 diversity. As early life is a critical period for metabolic development, given cefixime orally twice a day for five days in 3 consecutive periods microbiota disruption during this window period could have a with one-week interval. Microbiome analysis from caecal content was significant implication to the health status. In humans, early-life conducted to determine the changes in gut microbiota composition. microbiota disruption has been proven to be associated with increased This study found an increase in relative abundance of Bacteroides First page No.: 368 risk of overweight later in childhood. As the use of cefixime is rising and decrease in relative abundance of Firmicutes. An increase in in pediatric clinical infections, it is important to determine the Bacteroidetes/Firmicutes ratio by 32% was also observed. It was changes in gut microbiota composition after early-life exposure of concluded that early-life-repeated-administration of cefixime in rat P-ISSN.2089-1180 this antibiotic. -
Extraintestinal Clostridioides Difficile Infections
antibiotics Article Extraintestinal Clostridioides difficile Infections: Epidemiology in a University Hospital in Hungary and Review of the Literature Edit Urbán 1,*, Gabriella Terhes 2 and Márió Gajdács 3 1 Department of Public Health, Faculty of Medicine, University of Szeged, Dóm tér 10., 6720 Szeged, Hungary 2 Institute of Clinical Microbiology, Faculty of Medicine, University of Szeged, Semmelweis utca 6., 6725 Szeged, Hungary; [email protected] 3 Department of Pharmacodynamics and Biopharmacy, Faculty of Pharmacy, University of Szeged, Eötvös utca 6., 6720 Szeged, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-62-342-861 Received: 8 December 2019; Accepted: 31 December 2019; Published: 2 January 2020 Abstract: Extraintestinal manifestations of Clostridioides difficile infections (CDIs) are very uncommon, and according to the literature, poor outcomes and a high mortality have been observed among affected individuals. The objective of this study was to investigate the incidence rate of extraintestinal infections caused by C. difficile (ECD) in a tertiary-care university hospital in Hungary. During a 10-year study period, the microbiology laboratory isolated 4129 individual strains of C. difficile; among these, the majority were either from diarrheal fecal samples or from colonic material and only n = 24 (0.58%) were from extraintestinal sources. The 24 extraintestinal C. difficile isolates were recovered from 22 patients (female-to-male ratio: 1, average age: 55.4 years). The isolates in n = 8 patients were obtained from abdominal infections, e.g., appendicitis, rectal abscess or Crohn’s disease. These extraintestinal cases occurred without concomitant diarrhea. In all, but two cases C. -
A Case of Necrotizing Fasciitis Caused by Finegoldia Magna in a Patient with Type 2 Diabetes Mellitus
Le Infezioni in Medicina, n. 4, 359-363, 2018 CASE REPORTS 359 A case of necrotizing fasciitis caused by Finegoldia magna in a patient with type 2 diabetes mellitus Margherita Scapaticci1, Sabina Marchetto2, Andrea Nardi2, Maira Zoppelletto3, Andrea Bartolini3 1Laboratory Medicine Department, San Camillo Hospital, Treviso, Italy; 2Diabetic Foot Surgery Department, San Camillo Hospital, Treviso, Italy; 3Laboratory Medicine, San Bassiano Hospital, AULSS 7 Pedemontana, Bassano del Grappa, Italy SUMMARY Diabetes mellitus is one of the serious conditions the appropriate antibacterial agents. Hence the key associated with necrotizing fasciitis, a severe bac- to successful management is an early and accurate terial skin infection that spreads quickly and is diagnosis. We report a case of necrotizing fasciitis characterized by extensive necrosis of the deep and caused by Finegoldia magna in a patient with type 2 superficial fascia resulting in devascularization diabetes mellitus. and necrosis of the associated tissues. In addition to debridement and aggressive surgery procedures, Keywords: necrotizing fasciitis, type 2 diabetes mellitus, the effectiveness of therapy depends on choosing diabetic foot ulcers, anaerobes, GPACs. n INTRODUCTION lesion caused by a trauma, frequently trivial [4]. Symptoms include red or purple skin in the affect- iabetic foot ulcers are one of the main caus- ed area, severe pain, fever, and vomiting [5]. The Des of hospitalization and the major cause of major causative organisms include Streptococcus morbidity in individuals suffering from diabetes pyogenes, Staphylococcus aureus, anaerobic bacteria and, if not properly treated, can need amputation. and intestinal flora [4,6]. Diabetic patients may be The effectiveness of therapy depends on choos- predisposed to necrotizing fasciitis by the tissue hy- ing the appropriate antibacterial agents, and for poxia caused by arteriosclerosis and the immuno- this reason the key to a successful management is deficiency associated with poor glycemic control. -
Human Milk Microbiota Profiles in Relation to Birthing Method, Gestation and Infant Gender Camilla Urbaniak1,2, Michelle Angelini3, Gregory B
Urbaniak et al. Microbiome (2016) 4:1 DOI 10.1186/s40168-015-0145-y RESEARCH Open Access Human milk microbiota profiles in relation to birthing method, gestation and infant gender Camilla Urbaniak1,2, Michelle Angelini3, Gregory B. Gloor4 and Gregor Reid1,2* Abstract Background: Human milk is an important source of bacteria for the developing infant and has been shown to influence the bacterial composition of the neonate, which in turn can affect disease risk later in life. Very little is known about what factors shape the human milk microbiome. The goal of the present study was to examine the milk microbiota from a range of women who delivered vaginally or by caesarean (C) section, who gave birth to males or females, at term or preterm. Methods: Milk was collected from 39 Caucasian Canadian women, and microbial profiles were analyzed by 16S ribosomal RNA (rRNA) sequencing using the Illumina platform. Results: A diverse community of milk bacteria was found with the most dominant phyla being Proteobacteria and Firmicutes and at the genus level, Staphylococcus, Pseudomonas, Streptococcus and Lactobacillus. Comparison of bacterial profiles between preterm and term births, C section (elective and non-elective) and vaginal deliveries, and male and female infants showed no statistically significant differences. Conclusions: The study revealed the diverse bacterial types transferred to newborns. We postulate that there may be a fail-safe mechanism whereby the mother is “ready” to pass along her bacterial imprint irrespective of when and how the baby is born. Keywords: Human milk, Milk microbiota, Factors affecting the milk microbiota Background levels of Bifidobacterium in human milk correlate with With the incidence of various non-infectious diseases on low levels of Bifidobacterium in the neonatal gut [3], the rise, there is much interest in the developmental ori- allowing for higher than normal levels of Bacteroides to gins of health and disease and the potential role of early be established [4].