Supplementary Table 1. Up-regulated in Tert T6E6 cells compared to TertVec cells outRowID outRowSymbol outRowGeneDescription Fold 209395_at CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 54.97181197 220330_s_at SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 32.23546472 201859_at SRGN serglycin 25.38690804 208146_s_at CPVL carboxypeptidase, vitellogenic-like 20.0194377 206172_at IL13RA2 interleukin 13 receptor, alpha 2 19.09674258 207173_x_at CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 17.55016071 209396_s_at CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 16.07704114 212764_at 13.39688812 202037_s_at SFRP1 secreted frizzled-related 1 13.30332509 213258_at TFPI tissue factor pathway inhibitor (lipoprotein-associated 12.58454421 coagulation inhibitor) 201721_s_at LAPTM5 lysosomal associated multispanning membrane protein 5 11.73561147 204457_s_at GAS1 growth arrest-specific 1 11.19199635 201720_s_at LAPTM5 lysosomal associated multispanning membrane protein 5 10.76398002 202859_x_at IL8 interleukin 8 10.7067595 213711_at KRT81 keratin 81 10.553013 204115_at GNG11 guanine nucleotide binding protein (G protein), gamma 11 10.35858684 201858_s_at SRGN serglycin 10.35236466 209723_at SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 10.29221078 205767_at EREG epiregulin 10.04463047 221911_at ETV1 ets variant 1 9.989513096 209267_s_at SLC39A8 solute carrier family 39 ( transporter), member 8 9.233843211 204454_at LDOC1 leucine zipper, down-regulated in cancer 1 9.113048348 203799_at CD302 CD302 molecule 7.672823494 207442_at CSF3 colony stimulating factor 3 (granulocyte) 7.246221 213479_at NPTX2 neuronal pentraxin II 7.083385312 209742_s_at MYL2 myosin, light chain 2, regulatory, cardiac, slow 6.918469368 202664_at WIPF1 WAS/WASL interacting , member 1 6.806585089 204422_s_at FGF2 fibroblast growth factor 2 (basic) 6.591044037 229438_at FAM20C family with sequence similarity 20, member C 6.469010582 AFFX-M27830_5_at 6.051740223 205257_s_at AMPH amphiphysin (Stiff-Man syndrome with breast cancer 128kDa 5.986990962 autoantigen) 206157_at PTX3 pentraxin-related gene, rapidly induced by IL-1 beta 5.893673319 1563357_at 5.889847769 202036_s_at SFRP1 secreted frizzled-related protein 1 5.750290963 205896_at SLC22A4 solute carrier family 22 (organic cation transporter), member 4 5.502675929 1553293_at MRGPRX3 MAS-related GPR, member X3 5.381699746 202437_s_at CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 5.341469552 223629_at PCDHB5 protocadherin beta 5 5.299870908 203939_at NT5E 5'-nucleotidase, ecto (CD73) 5.198757351 219778_at ZFPM2 protein, multitype 2 5.18332733 205100_at GFPT2 glutamine-fructose-6-phosphate transaminase 2 5.044067647 232113_at LOC399959 hypothetical gene supported by BX647608 5.040883587 205476_at CCL20 chemokine (C-C motif) ligand 20 5.016743385 204174_at ALOX5AP arachidonate 5-lipoxygenase-activating protein 5.006409703 203889_at SCG5 secretogranin V (7B2 protein) 4.875641497 223700_at MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) 4.872619649 228461_at SH3MD4 SH3 multiple domains 4 4.833007295 226237_at COL8A1 collagen, type VIII, alpha 1 4.72333987 230493_at TMEM46 transmembrane protein 46 4.644996319 1555241_at C8orf59 8 open reading frame 59 4.571203608 202510_s_at TNFAIP2 tumor necrosis factor, alpha-induced protein 2 4.529917406 205623_at ALDH3A1 aldehyde dehydrogenase 3 family, memberA1 4.518439474 1555638_a_at SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 4.502976016 206290_s_at RGS7 regulator of G-protein signalling 7 4.490533085 212912_at RPS6KA2 ribosomal protein S6 , 90kDa, polypeptide 2 4.467712308 1555243_x_at C8orf59 chromosome 8 open reading frame 59 4.391963638 219869_s_at SLC39A8 solute carrier family 39 (zinc transporter), member 8 4.375996052 220334_at RGS17 regulator of G-protein signalling 17 4.373666057 241844_x_at TMEM156 transmembrane protein 156 4.350702137 219525_at FLJ10847 hypothetical protein FLJ10847 4.335318431 221731_x_at VCAN versican 4.328881231 210139_s_at PMP22 peripheral myelin protein 22 4.325764696 205364_at ACOX2 acyl-Coenzyme A oxidase 2, branched chain 4.312530562 1569583_at EREG epiregulin 4.301677193 213262_at SACS spastic ataxia of Charlevoix-Saguenay (sacsin) 4.277925798 204236_at FLI1 Friend leukemia virus integration 1 4.276801583 208892_s_at DUSP6 dual specificity phosphatase 6 4.274485697 224321_at TMEFF2 transmembrane protein with EGF-like and two follistatin-like 4.207168172 domains 2 205362_s_at PFDN4 prefoldin subunit 4 4.174482065 219294_at CENPQ centromere protein Q 4.051624392 210664_s_at TFPI tissue factor pathway inhibitor (lipoprotein-associated 4.049219024 coagulation inhibitor) 218332_at BEX1 brain expressed, X-linked 1 4.012148046 208891_at DUSP6 dual specificity phosphatase 6 3.987256963 211506_s_at IL8 interleukin 8 3.986487584 213943_at TWIST1 twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen 3.868822095 syndrome) () 208025_s_at HMGA2 high mobility group AT-hook 2 3.831313777 205830_at CLGN calmegin 3.802338768 231325_at UNC5D unc-5 homolog D (C. elegans) 3.794736095 234464_s_at EME1 essential meiotic endonuclease 1 homolog 1 (S. pombe) 3.794261252 228204_at PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 3.767437359 204620_s_at VCAN versican 3.747609724 205122_at TMEFF1 transmembrane protein with EGF-like and two follistatin-like 3.728079151 domains 1 223218_s_at NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B- 3.727900251 cells inhibitor, zeta 1562484_at FLJ35848 hypothetical protein FLJ35848 3.712618735 235333_at B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, 3.707954006 polypeptide 6 206953_s_at LPHN2 latrophilin 2 3.66839768 229761_at LOC440173 LOC440173 3.656230873 213249_at FBXL7 F-box and leucine-rich repeat protein 7 3.651538453 228393_s_at ZNF302 zinc finger protein 302 3.646884857 235498_at LRRC44 leucine rich repeat containing 44 3.630213121 226281_at DNER delta/notch-like EGF repeat containing 3.619380969 236075_s_at ZNF232 zinc finger protein 232 3.609916607 219512_at DSN1 DSN1, MIND kinetochore complex component, homolog (S. 3.532071655 cerevisiae) 210786_s_at FLI1 Friend leukemia virus integration 1 3.495635666 219888_at SPAG4 sperm associated antigen 4 3.481103315 230102_at ETV5 ets variant gene 5 (ets-related molecule) 3.448592602 205072_s_at XRCC4 X-ray repair complementing defective repair in Chinese hamster 3.421025634 cells 4 209676_at TFPI tissue factor pathway inhibitor (lipoprotein-associated 3.410479417 coagulation inhibitor) 211122_s_at CXCL11 chemokine (C-X-C motif) ligand 11 3.39445996 205361_s_at PFDN4 prefoldin subunit 4 3.385212267 202635_s_at POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa 3.3691225 202838_at FUCA1 fucosidase, alpha-L- 1, tissue 3.359514943 1566342_at SOD2 superoxide dismutase 2, mitochondrial 3.271320597 225575_at LIFR leukemia inhibitory factor receptor alpha 3.263932096 AFFX-r2-Ec-bioB-5_at 3.252406776 225908_at IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 3.251094019 227468_at CPT1C carnitine palmitoyltransferase 1C 3.249523251 1552767_a_at HS6ST2 heparan sulfate 6-O-sulfotransferase 2 3.246546484 231779_at IRAK2 interleukin-1 receptor-associated kinase 2 3.222290748 235759_at 3.221254801 212233_at 3.216281291 216609_at TXN thioredoxin 3.19170887 205176_s_at ITGB3BP integrin beta 3 binding protein (beta3-endonexin) 3.173338566 AFFX-BioC-3_at 3.15803213 225424_at GPAM glycerol-3-phosphate acyltransferase, mitochondrial 3.146974661 225455_at TADA1L transcriptional adaptor 1 (HFI1 homolog, yeast)-like 3.145753052 210299_s_at FHL1 four and a half LIM domains 1 3.139124865 204235_s_at GULP1 GULP, engulfment adaptor PTB domain containing 1 3.127988391 227059_at GPC6 glypican 6 3.123772514 236641_at KIF14 kinesin family member 14 3.110473187 215646_s_at VCAN versican 3.101072899 201426_s_at VIM vimentin 3.097073474 213220_at LOC92482 hypothetical protein LOC92482 3.064077376 225855_at EPB41L5 erythrocyte membrane protein band 4.1 like 5 3.05899056 226404_at RBM39 RNA binding motif protein 39 3.058554317 203349_s_at ETV5 ets variant gene 5 (ets-related molecule) 3.042918903 239058_at FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1) 3.037177751 215933_s_at HHEX hematopoietically expressed homeobox 3.032871834 230653_at SERF1A small EDRK-rich factor 1A (telomeric) 3.030517761 219495_s_at ZNF180 zinc finger protein 180 3.021992686 224367_at BEX2 brain expressed X-linked 2 3.01552919 226834_at 3.013880792 220122_at MCTP1 multiple C2 domains, transmembrane 1 3.001383855 203650_at PROCR protein C receptor, endothelial (EPCR) 2.994315993 203921_at CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 2.992124877 223381_at NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. 2.98536751 cerevisiae) 222848_at CENPK centromere protein K 2.979546787 201540_at FHL1 four and a half LIM domains 1 2.97367168 AFFX-r2-Ec-bioB-M_at 2.971636742 235629_at FN1 fibronectin 1 2.968187819 241017_at RPL31 ribosomal protein L31 2.965094939 219786_at MTL5 metallothionein-like 5, testis-specific (tesmin) 2.963833713 203008_x_at TXNDC9 thioredoxin domain containing 9 2.961304524 237853_x_at KRTAP10-12 keratin associated protein 10-12 2.960561979 203153_at IFIT1 interferon-induced protein with tetratricopeptide repeats 1 2.954978638 217915_s_at C15orf15 chromosome 15 open reading frame 15 2.948814466 AFFX-BioB-M_at 2.939979742 211573_x_at TGM2 transglutaminase 2 (C polypeptide, protein-glutamine-gamma- 2.933651914 glutamyltransferase) 207339_s_at LTB lymphotoxin beta (TNF superfamily, member 3) 2.928147435 208510_s_at PPARG peroxisome proliferator-activated receptor gamma 2.928053642 203535_at S100A9 S100 calcium binding protein A9 2.923398426 201111_at CSE1L CSE1 chromosome segregation 1-like (yeast) 2.908666187 202436_s_at CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 2.907115269 207096_at SAA4 serum amyloid A4, constitutive 2.902208158 1555759_a_at CCL5 chemokine (C-C motif) ligand 5 2.900340006 205880_at PRKD1 protein kinase D1 2.899874563 1553575_at 2.899818795 205421_at SLC22A3 solute carrier family 22 (extraneuronal monoamine transporter), 2.897131842 member 3 226610_at PRR6 proline rich 6 2.886502136 204205_at APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic 2.881435491 polypeptide-like 3G 203474_at IQGAP2 IQ motif containing GTPase activating protein 2 2.868840856 219918_s_at ASPM asp (abnormal spindle) homolog, microcephaly associated 2.866503642 (Drosophila) 204421_s_at FGF2 fibroblast growth factor 2 (basic) 2.86126537 235301_at KIAA1324L KIAA1324-like 2.859023194 204619_s_at VCAN versican 2.857472995 225532_at CABLES1 Cdk5 and Abl enzyme substrate 1 2.855405464 235888_at 2.853835562 215146_s_at TTC28 tetratricopeptide repeat domain 28 2.851513777 206985_at HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 2.848106472 204781_s_at FAS Fas (TNF receptor superfamily, member 6) 2.829746503 226630_at C14orf106 chromosome 14 open reading frame 106 2.829413651 AFFX-BioB-5_at 2.812993024 208229_at FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase, 2.811879778 keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) 1553311_at C20orf197 chromosome 20 open reading frame 197 2.804991296 205207_at IL6 interleukin 6 (interferon, beta 2) 2.804492015 AFFX-BioB-3_at 2.800418265 228751_at CLK4 CDC-like kinase 4 2.781905912 239641_at FLI1 Friend leukemia virus integration 1 2.777220964 244427_at KIF23 kinesin family member 23 2.77648109 208893_s_at DUSP6 dual specificity phosphatase 6 2.775143807 237250_at 2.774675783 220171_x_at KIAA1704 KIAA1704 2.77337163 222465_at C15orf15 chromosome 15 open reading frame 15 2.77291095 226962_at ZBTB41 zinc finger and BTB domain containing 41 2.764065484 204646_at DPYD dihydropyrimidine dehydrogenase 2.76380124 231975_s_at MIER3 mesoderm induction early response 1, family member 3 2.760622191 AFFX-BioDn-5_at 2.758692732 228737_at C20orf100 chromosome 20 open reading frame 100 2.757051851 204906_at RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 2.752893879 204301_at KBTBD11 kelch repeat and BTB (POZ) domain containing 11 2.752864928 210495_x_at FN1 fibronectin 1 2.749042681 225786_at FAM36A family with sequence similarity 36, member A 2.748801255 1552335_at CATSPER1 cation channel, sperm associated 1 2.748379704 204655_at CCL5 chemokine (C-C motif) ligand 5 2.736729923 209016_s_at KRT7 keratin 7 2.733505137 209422_at PHF20 PHD finger protein 20 2.730217907 211758_x_at TXNDC9 thioredoxin domain containing 9 2.728792399 222317_at PDE3B phosphodiesterase 3B, cGMP-inhibited 2.727147964 214043_at PTPRD protein tyrosine phosphatase, receptor type, D 2.726060482