Defensins: More Than Nature's Anti-Bug Spray?
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(12) United States Patent (10) Patent No.: US 8,585,627 B2 Dacey, Jr
US008585627B2 (12) United States Patent (10) Patent No.: US 8,585,627 B2 Dacey, Jr. et al. (45) Date of Patent: Nov. 19, 2013 (54) SYSTEMS, DEVICES, AND METHODS (51) Int. Cl. INCLUDING CATHETERS CONFIGURED TO A6B 9/00 (2006.01) MONITOR BOFILMI FORMATION HAVING (52) U.S. Cl. BOFILMI SPECTRAL INFORMATION USPC ................................... 604/8; 604/6.08; 604/9 CONFIGURED ASA DATASTRUCTURE (58) Field of Classification Search USPC ........................................... 604/6.08, 8, 9, 20 (75) Inventors: Ralph G. Dacey, Jr., St. Louis,MO See application file for complete search history. (US); Roderick A. Hyde, Redmond, WA (US); Muriel Y. Ishikawa, Livermore, CA (US); Jordin T. Kare, Seattle, WA (56) References Cited (US); Eric C. Leuthardt, St. Louis,MO U.S. PATENT DOCUMENTS (US); Nathan P. Myhrvold, Bellevue, WA (US); Dennis J. Rivet, Chesapeake, 3,274.406 A 9/1966 Sommers, Jr. VA (US); Michael A. Smith, Phoenix, 3,825,016 A 7, 1974 Lale et al. AZ (US); Elizabeth A. Sweeney, Seattle, (Continued) WA (US); Clarence T. Tegreene, Bellevue, WA (US); Lowell L. Wood, FOREIGN PATENT DOCUMENTS Jr., Bellevue, WA (US); Victoria Y. H. EP 1614 442 A2 1, 2006 Wood, Livermore, CA (US) WO WO91,06855 A2 5, 1991 (73) Assignee: The Invention Science Fund I, LLC (Continued) (*) Notice: Subject to any disclaimer, the term of this OTHER PUBLICATIONS patent is extended or adjusted under 35 PCT International Search Report; International App. No. PCT/ U.S.C. 154(b) by 291 days. US2010/003088; Apr. 1, 2011; pp. 1-4. (21) Appl. No.: 12/927,294 (Continued) (22) Filed: Nov. -
Effect of Dermcidin, an Antimicrobial Peptide, on Body Fat Mobilization in Normal Mice
111 Effect of dermcidin, an antimicrobial peptide, on body fat mobilization in normal mice Kyung-Ah Kim1,*, Sun-O Ka1,*, Woo Sung Moon2, Ho-Keun Yi3, Young-Hoon Lee4, Kang-Beom Kwon5, Jin-Woo Park1 and Byung-Hyun Park1 Departments of 1Biochemistry and 2Pathology, Medical School and Institute for Medical Sciences, 3Biochemistry and 4Oral Anatomy, Dental School and Institute of Oral Biosciences, Chonbuk National University, Jeonju, Jeonbuk 561-756, South Korea 5Department of Physiology, School of Oriental Medicine, Wonkwang University, Iksan, Jeonbuk 570-749, South Korea (Correspondence should be addressed to B-H Park; Email: [email protected]) *(K-A Kim and S-O Ka contributed equally to this work) Abstract Dermcidin (DCD), an antimicrobial peptide that is secreted tissues obtained from Ad-b-gal-injected mice. The gene by sweat glands, is reportedly a human homolog of mouse expression profiles revealed an upregulation of hormone- proteolysis-inducing factor. This study was conducted to sensitive lipase and adipose fatty acid-binding protein, both of investigate the effect of DCD on body fat mobilization. The which are involved in adipocyte lipolysis, in Ad-DCD- expression level of DCD in the livers of Ad-DCD-injected injected mice, and this lipolytic effect of DCD paralleled the mice was higher than in those of Ad-b-galactosidase (Ad-b- increase of circulating tumor necrosis factor-a (TNF-a)level gal)-injected mice 7 days after injection. In addition, injection that was observed. The perilipin levels in adipose tissue were with the Ad-DCD virus led to decreased body weight and decreased in Ad-DCD-injected mice when compared with epididymal fat mass when compared with controls. -
Design, Development, and Characterization of Novel Antimicrobial Peptides for Pharmaceutical Applications Yazan H
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 8-2013 Design, Development, and Characterization of Novel Antimicrobial Peptides for Pharmaceutical Applications Yazan H. Akkam University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Biochemistry Commons, Medicinal and Pharmaceutical Chemistry Commons, and the Molecular Biology Commons Recommended Citation Akkam, Yazan H., "Design, Development, and Characterization of Novel Antimicrobial Peptides for Pharmaceutical Applications" (2013). Theses and Dissertations. 908. http://scholarworks.uark.edu/etd/908 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Design, Development, and Characterization of Novel Antimicrobial Peptides for Pharmaceutical Applications Design, Development, and Characterization of Novel Antimicrobial Peptides for Pharmaceutical Applications A Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Cell and Molecular Biology by Yazan H. Akkam Jordan University of Science and Technology Bachelor of Science in Pharmacy, 2001 Al-Balqa Applied University Master of Science in Biochemistry and Chemistry of Pharmaceuticals, 2005 August 2013 University of Arkansas This dissertation is approved for recommendation to the Graduate Council. Dr. David S. McNabb Dissertation Director Professor Roger E. Koeppe II Professor Gisela F. Erf Committee Member Committee Member Professor Ralph L. Henry Dr. Suresh K. Thallapuranam Committee Member Committee Member ABSTRACT Candida species are the fourth leading cause of nosocomial infection. The increased incidence of drug-resistant Candida species has emphasized the need for new antifungal drugs. -
Le Fonctionnement Du Transporteur ABC De Streptococcus Pneumoniae Impliqué Dans La Résistance Contre Les Peptides Antimicrobiens Jaroslav Vorac
Le fonctionnement du transporteur ABC de Streptococcus pneumoniae impliqué dans la résistance contre les peptides antimicrobiens Jaroslav Vorac To cite this version: Jaroslav Vorac. Le fonctionnement du transporteur ABC de Streptococcus pneumoniae impliqué dans la résistance contre les peptides antimicrobiens. Biologie moléculaire. Université Grenoble Alpes, 2016. Français. NNT : 2016GREAV009. tel-01503129 HAL Id: tel-01503129 https://tel.archives-ouvertes.fr/tel-01503129 Submitted on 6 Apr 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITÉ GRENOBLE ALPES Spécialité : Biologie Structurale et Nanobiologie Arrêté ministériel : 7 août 2006 Présentée par Jaroslav VORÁ! Thèse dirigée par Dr. Jean-Michel JAULT et codirigée par Dr. Claire DURMORT préparée au sein d e l’ Institut de Biologie Structurale dans l'École Doctorale Chimie et Sciences d u Vivant Le fonctionnement du transporteur ABC de Streptococcus pneumoniae impliqué dans la résistance contre les peptides antimicrobiens 7KqVHVRXWHQXHSXEOLTXHPHQWOHDYULO Jury composé de : Prof. Tino KRELL Rapporteur Dr. Marc PRUDHOMME Rapporteur Dr. Guillaume LENOIR Examinateur Prof. Dominique SCHNEIDER 3UpVLGHQW Dr. Jean-Michel Jault Directeur de th qse Dr. Claire Durmort Co-directrice de th qse THESIS To obtain the degree of DOCTOR of PHILOSOPHY of the UNIVERSITY GRENOBLE ALPES Speciality : Structural Biology and Nanobiology Arrêté ministériel : 7 août 2006 Presented by Jaroslav VORÁ! Thesis directed by Dr. -
Analysis of the Solution Structure of the Human Antibiotic Peptide Dermcidin and Its Interaction with Phospholipid Vesicles
BMB reports Analysis of the solution structure of the human antibiotic peptide dermcidin and its interaction with phospholipid vesicles Hyun Ho Jung1, Sung-Tae Yang2, Ji-Yeong Sim1, Seungkyu Lee1, Ju Yeon Lee1, Ha Hyung Kim3, Song Yub Shin4 & Jae Il Kim1,* 1Department of Life Science, Gwangju Institute of Science and Technology, Gwangju, 2Section on Membrane Biology, Laboratory of Cellular and Molecular Biophysics, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, 3College of Pharmacy, Chung-Ang University, Seoul, 4Department of Bio-Materials, Graduate School and Department of Cellular & Molecular Medicine, School of Medicine, Chosun University, Gwangju 501-759, Korea Dermcidin is a human antibiotic peptide that is secreted by the of the modes of action of various antimicrobial peptides have sweat glands and has no homology to other known antimicro- revealed that their cationic nature contributes to their initial bial peptides. As an initial step toward understanding dermci- binding to negatively charged bacterial membranes through din’s mode of action at bacterial membranes, we used homo- electrostatic interaction, while their amphipathic structures en- nuclear and heteronuclear NMR to determine the conforma- hance peptide-lipid interactions at the water-bilayer interface, tion of the peptide in 50% trifluoroethanol solution. We found ultimately leading to cell death via pore formation or mem- that dermcidin adopts a flexible amphipathic α-helical struc- brane disintergration (9-14). ture with a helix-hinge-helix motif, which is a common molec- Dermcidin (DCD) is an antimicrobial peptide found in hu- ular fold among antimicrobial peptides. Spin-down assays of man sweat. -
Persistent Infection by Yersinia Pseudotuberculosis
Persistent infection by Yersinia pseudotuberculosis Kemal Avican Department of Molecular Biology Umeå Centre for Microbial Research (UCMR) Laboratory for Molecular Infection Sweden (MIMS) Umeå University Umeå 2015 Copyright © Kemal Avican Responsible publisher under swedish law: the Dean of the Medical Faculty This work is protected by the Swedish Copyright Legislation (Act 1960:729) ISBN: 978-91-7601-335-9 ISSN: 0346-6612 New Series No: 1748 Cover Picture: Transcriptome of Yersinia pseudotuberculosis Cover Design: Kemal Avican Electronic version is avaliable at http://umu.diva-portal.org/ Printed by: Print & Media Umeå, Sweden 2015 To my parents… ! Table of contents Abstract ................................................................................................... i List of Abbreviations ............................................................................. ii Papers in This Thesis ........................................................................... iv 1! Introduction ...................................................................................... 1! 1.1! Emergence of Bacterial Pathogens ................................................................ 3! 1.1.1! Emergence of pathogenic properties ............................................................................ 3! 1.1.1.1! Bacteria–protozoa interactions .............................................................................. 3! 1.1.1.2! Genome plasticity ................................................................................................. -
Microbial Mechanisms of Pathogenicity 661
Chapter 15 | Microbial Mechanisms of Pathogenicity 661 Chapter 15 Microbial Mechanisms of Pathogenicity Figure 15.1 Although medical professionals rely heavily on signs and symptoms to diagnose disease and prescribe treatment, many diseases can produce similar signs and symptoms. (credit left: modification of work by U.S. Navy) Chapter Outline 15.1 Characteristics of Infectious Disease 15.2 How Pathogens Cause Disease 15.3 Virulence Factors of Bacterial and Viral Pathogens 15.4 Virulence Factors of Eukaryotic Pathogens Introduction Jane woke up one spring morning feeling not quite herself. Her throat felt a bit dry and she was sniffling. She wondered why she felt so lousy. Was it because of a change in the weather? The pollen count? Was she coming down with something? Did she catch a bug from her coworker who sneezed on her in the elevator yesterday? The signs and symptoms we associate with illness can have many different causes. Sometimes they are the direct result of a pathogenic infection, but in other cases they result from a response by our immune system to a pathogen or another perceived threat. For example, in response to certain pathogens, the immune system may release pyrogens, chemicals that cause the body temperature to rise, resulting in a fever. This response creates a less-than-favorable environment for the pathogen, but it also makes us feel sick. Medical professionals rely heavily on analysis of signs and symptoms to determine the cause of an ailment and prescribe treatment. In some cases, signs and symptoms alone are enough to correctly identify the causative agent of a disease, but since few diseases produce truly unique symptoms, it is often necessary to confirm the identity of the infectious agent by other direct and indirect diagnostic methods. -
The Antimicrobial Effect of Dermcidin Investigated by Computational Electrophysiology Molecular Dynamics Simulations
The antimicrobial effect of dermcidin investigated by computational electrophysiology molecular dynamics simulations Björn Forsberg Department of Biochemistry and Biophysics Stockholm University 2013 Supervisor(s): Erik Lindahl (SU) / Bert de Groot (MPI-BPC) Conducted in the group for biomolecular dynamics at the dept. of theoretical and computational biophysics, Max-Planck Institute for biophysical Chemistry, Göttingen, Germany The barber put a hand on top of my head to turn me for a better look. Then he said to the guard, "Did you get your deer, Charles?" I liked this barber. We weren’t acquainted well enough to call each other by name, but when I came in for a haircut he knew me and knew I used to fish, so we’d talk fishing. I don’t think he hunted, but he could talk on any subject and was a good listener. In this regard he was a good barber. "Bill, it’s a funny story. The damnedest thing," the guard said. He removed the toothpick and laid it in the ashtray. He shook his head. "I did and yet I didn’t. So yes and no to your question." - Raymond Carver, The Calm 2 Contents 1 Popular science description 4 2 Abstract 5 3 Introduction 6 4 Introduction to the biological system under study 6 4.1 Cellular membranes . 6 4.1.1 Lipids . 6 4.1.2 Additional components . 7 4.1.3 Bacterial membranes . 7 4.2 AntiMicrobial Peptides (AMPs)and the antimicrobial effect . 8 4.3 Human dermcidin . 9 4.3.1 Prevalence and function . 9 4.3.2 Structure . -
The Structure of the Antimicrobial Human Cathelicidin LL-37 Shows
www.nature.com/scientificreports OPEN The structure of the antimicrobial human cathelicidin LL‑37 shows oligomerization and channel formation in the presence of membrane mimics Enea Sancho‑Vaello1,7, David Gil‑Carton2, Patrice François 3, Eve‑Julie Bonetti3, Mohamed Kreir4,8, Karunakar Reddy Pothula 5, Ulrich Kleinekathöfer 5 & Kornelius Zeth6* The human cathelicidin LL‑37 serves a critical role in the innate immune system defending bacterial infections. LL‑37 can interact with molecules of the cell wall and perforate cytoplasmic membranes resulting in bacterial cell death. To test the interactions of LL‑37 and bacterial cell wall components we crystallized LL‑37 in the presence of detergents and obtained the structure of a narrow tetrameric channel with a strongly charged core. The formation of a tetramer was further studied by cross‑ linking in the presence of detergents and lipids. Using planar lipid membranes a small but defned conductivity of this channel could be demonstrated. Molecular dynamic simulations underline the stability of this channel in membranes and demonstrate pathways for the passage of water molecules. Time lapse studies of E. coli cells treated with LL‑37 show membrane discontinuities in the outer membrane followed by cell wall damage and cell death. Collectively, our results open a venue to the understanding of a novel AMP killing mechanism and allows the rational design of LL‑37 derivatives with enhanced bactericidal activity. Te increase in antibiotic resistance is one of the biggest health challenges our society is currently facing1. As a consequence, the discovery of new bactericidal drug candidates from any source including antimicrobial peptides (AMPs) is urgent2–4. -
Innate Immunology, Lecture 5: Barrier Epithelia and Antimicrobial Peptides
Stanford Microbiology and Immunology 104/204: Innate Immunology, Lecture 5: Barrier epithelia and antimicrobial peptides Structure of a lung Trachea lead to bronchi to bronchioles to alveoli It is a dead-end structure that must deal with inhaled particles which would otherwise accumulate in the alveolae Mucus escalator In the bronchioles the mucus escalator moves material up to the throat. This escalator functions in the eustachian tubes, nose and lungs Think of the escalator as moving flypaper that traps particles and moves them out of the lung. The bronchiolar epithelia are composed of epithelia cells with many cilia, goblet cells that secrete mucus and mucus glands In an uninfected state the mucus glands produce most of the mucus but during an infection the goblet cells are induced to produce large amounts of mucus resulting in the production of phlegm. Alveoli This is the location where oxygen and carbon dioxide are exchanged. A thin epithelium is in close contact with capillaries, allowing rapid gas exchange. Alveolar lumen contains Macrophages Complement Antibodies- IgA Surfactant – also an opsonizing lectin Alveolus is a dead end – it contains no cilia and cannot cough things out; Particles must be removed by macrophages Infection and biowarfare considerations Particles above a certain size (~10 um) will contact the mucus-lined walls of the bronchioles and be swept from the lungs. Inhaled pathogens that survive in the alveolae must be smaller than this – in the 1-5 µm range we remember from the anthrax mail case. How do you defeat -
Structural Basis for Tuning Activity and Membrane Specificity of Bacterial
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.16.154724; this version posted June 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Structural basis for tuning activity and membrane specificity of bacterial 2 cytolysins 3 4 5 Authors: Nita R. Shah1, Tomas B. Voisin1, Edward S. Parsons2, Courtney M. Boyd1, Bart W. 6 Hoogenboom2,3, Doryen Bubeck1* 7 8 Affiliations: 9 1 Department of Life Sciences, Sir Ernst Chain Building, Imperial College London, London, SW7 10 2AZ, UK 11 2 London Centre for Nanotechnology, University College London, London, WC1H 0AH, UK 12 3 Department of Physics and Astronomy, University College London, Gower Street, London, 13 WC1E 6BT, UK 14 15 16 *Contact Information: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.16.154724; this version posted June 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 17 ABSTRACT 18 Cholesterol-dependent cytolysins (CDCs) form protein nanopores to lyse cells. They target 19 eukaryotic cells using different mechanisms, but all require the presence of cholesterol to pierce 20 lipid bilayers. How CDCs use cholesterol to selectively lyse cells is essential for understanding 21 virulence strategies of several pathogenic bacteria, and for repurposing CDCs to kill new cellular 22 targets. -
Histatin Peptides: Pharmacological Functions and Their Applications in Dentistry
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Bradford Scholars The University of Bradford Institutional Repository http://bradscholars.brad.ac.uk This work is made available online in accordance with publisher policies. Please refer to the repository record for this item and our Policy Document available from the repository home page for further information. To see the final version of this work please visit the publisher’s website. Access to the published online version may require a subscription. Link to publisher’s version: http://dx.doi.org/10.1016/j.jsps.2016.04.027 Citation: Khurshid Z, Najeeb S, Mali M et al (2016) Histatin peptides: Pharmacological functions and their applications in dentistry. Saudi Pharmaceutical Journal. Copyright statement: © 2016 The Authors. This is an open access article licensed under the Crative Commons CC-BY-NC-ND license. Saudi Pharmaceutical Journal (2016) xxx, xxx–xxx King Saud University Saudi Pharmaceutical Journal www.ksu.edu.sa www.sciencedirect.com REVIEW Histatin peptides: Pharmacological functions and their applications in dentistry Zohaib Khurshid a, Shariq Najeeb b, Maria Mali c, Syed Faraz Moin d, Syed Qasim Raza e, Sana Zohaib f, Farshid Sefat f,g, Muhammad Sohail Zafar h,* a Department of Dental Biomaterials, College of Dentistry, King Faisal University, Al-Ahsa, Saudi Arabia b School of Dentistry, University of Sheffield, Sheffield, UK c Department of Endodontics, Fatima Jinnah Dental College, Karachi, Pakistan d National Centre for Proteomics,