Building the Business Case for SNOMED CT®
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Direct Comparison of MEDCIN and SNOMED CT for Representation Of
Direct Comparison of MEDCIN ® and SNOMED CT ® for Representation of a General Medical Evaluation Template Steven H. Brown MS MD 1,2 , S. Trent Rosenbloom MD MPH 2 , Brent A. Bauer MD 3, Dietli nd Wahner -Roedler MD 3, David A. Froehling, MD, Kent R, Bailey PhD, M ichael J Lincoln MD, Diane Montella MD 1, Elliot M. Fielstein PhD 1,2 Peter L. Elkin MD 3 1. Department of Veterans Affairs 2. Vanderbilt University, Nashville TN 3. Mayo Clinic, Rochester MN Background : Two candidate terminologies to efforts. Usable and functionally complete support entry of ge neral medical data are standard terminologies need to be available to SNOMED CT and MEDCIN . W e compare the systems designers and architects. Two candidate ability of SNOMED CT and MEDCIN to terminologies to support entry of general medical represent concepts and interface terms from a data are SNOMED CT and MED CIN . VA gener al medical examination template. Methods : We parsed the VA general medical SNOMED CT is a reference terminology that evaluation template and mapped the resulting has been recommended for various components expressions into SNOMED CT and MEDCIN . of patient medical record information by the Internists conducted d ouble independent reviews Consolidated Health Informatics Council and the on 864 expressions . Exact concept level matches National Committee on Vital and Health were used to evaluate reference coverage. Exact Statistics. (12) SNOMED CT, licensed for US - term level matches were required for interface wide use by the National Library of Medicine in terms. 2003, was evaluated in 15 M edline indexed Resul ts : Sensitivity of SNOMED CT as a studie s in 2006 . -
Advancing Standards for Precision Medicine
Advancing Standards for Precision Medicine FINAL REPORT Prepared by: Audacious Inquiry on behalf of the Office of the National Coordinator for Health Information Technology under Contract No. HHSM-500-2017-000101 Task Order No. HHSP23320100013U January 2021 ONC Advancing Standards for Precision Medicine Table of Contents Executive Summary ...................................................................................................................................... 5 Standards Development and Demonstration Projects ............................................................................ 5 Mobile Health, Sensors, and Wearables ........................................................................................... 5 Social Determinants of Health (SDOH) ............................................................................................. 5 Findings and Lessons Learned .......................................................................................................... 6 Recommendations ........................................................................................................................................ 6 Introduction ................................................................................................................................................... 7 Background ................................................................................................................................................... 7 Project Purpose, Goals, and Objectives .................................................................................................. -
Standard Nursing Terminologies: a Landscape Analysis
Standard Nursing Terminologies: A Landscape Analysis MBL Technologies, Clinovations, Contract # GS35F0475X Task Order # HHSP2332015004726 May 15, 2017 Table of Contents I. Introduction ....................................................................................................... 4 II. Background ........................................................................................................ 4 III. Landscape Analysis Approach ............................................................................. 6 IV. Summary of Background Data ............................................................................ 7 V. Findings.............................................................................................................. 8 A. Reference Terminologies .....................................................................................................8 1. SNOMED CT ................................................................................................................................... 8 2. Logical Observation Identifiers Names and Codes (LOINC) ........................................................ 10 B. Interface Terminologies .................................................................................................... 11 1. Clinical Care Classification (CCC) System .................................................................................... 11 2. International Classification for Nursing Practice (ICNP) ............................................................. 12 3. NANDA International -
Identifying Clinical Terms in Medical Text Using Ontology-Guided Machine Learning
JMIR MEDICAL INFORMATICS Arbabi et al Original Paper Identifying Clinical Terms in Medical Text Using Ontology-Guided Machine Learning Aryan Arbabi1,2, MSc; David R Adams3, MD, PhD; Sanja Fidler1, PhD; Michael Brudno1,2, PhD 1Department of Computer Science, University of Toronto, Toronto, ON, Canada 2Centre for Computational Medicine, Hospital for Sick Children, Toronto, ON, Canada 3Section on Human Biochemical Genetics, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, United States Corresponding Author: Michael Brudno, PhD Department of Computer Science University of Toronto 10 King©s College Road, SF 3303 Toronto, ON, M5S 3G4 Canada Phone: 1 4169782589 Email: [email protected] Abstract Background: Automatic recognition of medical concepts in unstructured text is an important component of many clinical and research applications, and its accuracy has a large impact on electronic health record analysis. The mining of medical concepts is complicated by the broad use of synonyms and nonstandard terms in medical documents. Objective: We present a machine learning model for concept recognition in large unstructured text, which optimizes the use of ontological structures and can identify previously unobserved synonyms for concepts in the ontology. Methods: We present a neural dictionary model that can be used to predict if a phrase is synonymous to a concept in a reference ontology. Our model, called the Neural Concept Recognizer (NCR), uses a convolutional neural network to encode input phrases and then rank medical concepts based on the similarity in that space. It uses the hierarchical structure provided by the biomedical ontology as an implicit prior embedding to better learn embedding of various terms. -
Snomed Ct® and 3M™ Hdd: the Successful Implementation Strategy
SNOMED CT® AND 3M™ HDD: THE SUCCESSFUL IMPLEMENTATION STRATEGY Federal Health Care Agencies Take the Lead The United States government has taken a leading role in the use of health information technologies to enhance the quality of patient care. Considered by leaders in health care technology to be a necessary step towards the enhancement of patient care, a 5-year, nationwide license for SNOMED Clinical Terms® (SNOMED CT®) was purchased by agencies of the Department of Health and Human Services for perpetual use by any governmental or eligible public, for- profit and non-profit organization located, incorporated and operating in the U.S. A comprehensive, widely accessible controlled medical vocabulary (CMV) such as this is deemed a required part of any integrated clinical information system that provides the communication of accurate, detailed patient information. In January 2004 the National Library of Medicine (NLM) of the National Institutes of Health will make SNOMED CT® available via the Unified Medical Language System® (UMLS). This comprehensive set of encoded medical concepts will work within a framework of interoperability standards for the electronic exchange of clinical health information. SNOMED – CT® will be incorporated into this common set of health care information technologies to support numerous efforts within the health care industry. Projects - such as the National Health Information Infrastructure (NHII) and the paperless electronic health record - have been outlined through collaborations between industry leaders, health care associations, and the U.S. government. The widespread use of an integrated set of health information standards is considered to be essential for the success of such projects, which have the potential for improving the quality of health-related services through the seamless exchange of accurate information. -
SNOMED International Address to the NCVHS Semantic Standards Harmonization Panel
SNOMED International address to the NCVHS Semantic Standards Harmonization Panel James T. Case MS, DVM, PhD, FACMI Chief Terminologist, SNOMED International AUGUST 25, 2021 SNOMED International: Delivering CT What do we mean by ● Clinical meaning captured specifically and explicitly semantic ○ Granularity harmonization? ○ No implied meaning ○ Computable definitions In the context of healthcare ● Lossless transfer between terminology standards, systems harmonization is interpreted ● Bidirectional equivalence maps as the maintenance of fidelity ● Compatible with multiple of meaning of data information models throughout its lifecycle, ● Meaning maintained when unaffected by mappings or translated to another language translation. 2 SNOMED International: Delivering CT What is the greatest opportunity for harmonizing terminology standards? ● Identification of a subset of high priority, robust, fit-for-purpose standards ○ “The nice thing about standards is that there are so many of them to choose from.” - Andrew S. Tanenbaum ○ Reliably maintained, frequent releases ○ Focus on enhancement (comprehensive coverage) ○ USCDI is a good start (limited scope) ● Collaboration among SDOs (formal agreements) ● Joint Initiative Council for Global Health Informatics Standardization (JIC) Focus on a small set of “fit-for-purpose” standards. Agreement needed for SDOs to work together 3 SNOMED International: Delivering CT What are the greatest barriers to semantic harmonization? How do we move the barrier? • Leverage experiences in other ● Extensive use of local -
SNOMED CT Clinical Forum
Benefits of SNOMED CT from a clinical perspective; The Rotherham experience Tuesday 9 April 2019 SNOMED International – Business MeetinGs 2019, London, UK Monica Jones – Associate Director of Information Services TRFT & Population Health ManaGement Lead for YHCR Agenda This presentation will provide an honest account drawing on real life experience of how using SNOMED CT has impacted the Rotherham NHS Foundation Trust, over the past six years, offering insight on the processes and challenges as well as sharing lessons learned. This session focuses on the clinical benefits of implementing SNOMED CT, gaining valuable insight from a trust that has already made the changeover. From practical necessities to wider service implications, these insights and 'top tips' will enable colleagues to accurately predict and overcome likely challenges. Rotherham NHS FT - Health Informatics • A fully co-terminus health and social care community with a population of c260,000 • ‘Medium’ District General Hospital and community services. • Approx. 4,200 staff, £250M pa budGet • Rural with Industrial Centre • Shared Health Informatics Service The NHS digital strategic landscape • The focus in digital planning has shifted from trusts to the local health community, Sustainability and Transformation Partnerships (STPs) leading to Integrated Care Systems (ICS) • The national agenda has changed from technology to ‘digitisation’ • The Wachter Report to NHS England endorsed this and led to 12 Trusts being appointed ‘Global Digitisation Exemplars (GDEs)’ attracting matched funding up to £10m • Trust-based systems are still critical in driving a paper-lite NHS agenda for the 2020’s • There is an increased awareness of CyberSecurity threats to the NHS Over the past 10 years the Trust has implemented and developed core mission-critical patient systems around Meditech (Acute) and SystmOne (Community). -
The Need for a Global Language - SNOMED CT Introduction
The need for a global language - SNOMED CT introduction Jane Millar Collaboration Lead Ian Green Clinical Engagement and Education business manager Purpose of tutorial ▪ Increasing knowledge of SNOMED CT and its applicability for healthcare professionals, ▪ Outlining how SNOMED CT contributes to the EHR and the benefits for those caring for individuals. ▪ Provides details of the work with ICN to align SNOMED CT and ICNP and practically what this means for nursing documentation and the shared EHR Objectives therefore: ▪ Attendees will: ▪ be able to understand what SNOMED CT is and how it fits in the EHR with other standards ▪ have an insight into its importance in supporting the information requirements for Nursing practice ▪ have an insight into the importance of nursing input into the development of SNOMED CT ▪ know how you can extend your knowledge of SNOMED CT Agenda ▪ SNOMED CT and its place as part of the EHR (part 1) ▪ Background ▪ What is SNOMED CT Break – group work ▪ SNOMED CT and its place as part of the EHR (part 2) ▪ Scope and usage of SNOMED CT ▪ Clinical input to SNOMED CT ▪ IHTSDO approach to Collaboration ▪ Linking SNOMED CT and ICNP through Collaboration Break – group work ▪ Feedback from break ▪ Taking SNOMED CT home ▪ What next, education, finding out more etc Approach ▪ High level view only in the time, with guidance on where to find out more ▪ As interactive as possible – ▪ Sharing experience of those in the room ▪ Take questions as we go – please raise your hand to indicate you have a question SNOMED CT and the EHR -
UMLS Update & Discussion
Introduction – Jerry Sheehan UMLS Overview – Olivier Bodenreider Brief History Overview through an example (Addison’s disease) UMLS Users and Use Cases – Patrick McLaughlin UMLS Terminology Services (UTS) Usage Statistics Distribution and other Issues 2 Olivier Bodenreider, MD, PhD Chief, Cognitive Science Branch Lister Hill National Center for Biomedical Communications National Library of Medicine [email protected] 3 Unified Medical Language System 4 Started in 1986 National Library of Medicine “Long-term R&D project” (Integrated Academic Complementary to IAIMS Information Management Systems) «[…] the UMLS project is an effort to overcome two significant barriers to effective retrieval of machine-readable information. • The first is the variety of ways the same concepts are expressed in different machine-readable sources and by different people. • The second is the distribution of useful information among many disparate databases and systems.» Lindberg DA, Humphreys BL, McCray AT. Methods Inf Med. 1993 Aug;32(4):281-91. 5 Database Series of relational files Interfaces UMLS Terminology Services (UTS) Web-based UMLS browser Controlled access To files for download (UMLS, RxNorm, SNOMED CT) To derived applications (VSAC, CDE repository) Application programming interfaces (Restful API) Applications lvg (lexical programs) MetamorphoSys (installation and customization) “middleware” rather than end-user application 6 Metathesaurus . Organize terms Concepts Inter-concept relationships . Organize concepts Semantic Network Semantic types . Categorize concepts Semantic network relationships Lexical resources SPECIALIST Lexicon . Support discovery of Lexical tools synonymy 7 (2017AB) . SNOMED CT . English 153 families of source vocabularies . Spanish Not counting 48 translations . RxNorm . FDB 25 languages (through translations) . Micromedex . Multum Broad coverage of biomedicine . CVX 10.7M names (normalized) . -
Useful Applications for SNOMED CT®
Useful Applications for SNOMED CT® Audio Seminar/Webinar March 8, 2007 Practical Tools for Seminar Learning © Copyright 2007 American Health Information Management Association. All rights reserved. Disclaimer The American Health Information Management Association makes no representation or guarantee with respect to the contents herein and specifically disclaims any implied guarantee of suitability for any specific purpose. AHIMA has no liability or responsibility to any person or entity with respect to any loss or damage caused by the use of this audio seminar, including but not limited to any loss of revenue, interruption of service, loss of business, or indirect damages resulting from the use of this program. As a provider of continuing education, the American Health Information Management Association (AHIMA) must assure balance, independence, objectivity and scientific rigor in all of its endeavors. AHIMA is solely responsible for control of program objectives and content and the selection of presenters. All speakers and planning committee members are expected to disclose to the audience: 1) any significant financial interest or other relationships with the manufacturer(s) or provider(s) of any commercial product(s) or services(s) discussed in an educational presentation; 2) any significant financial interest or other relationship with any companies providing commercial support for the activity; and 3) if the presentation will include discussion of investigational or unlabeled uses of a product. The intent of this requirement is not to prevent a speaker with commercial affiliations from presenting, but rather to provide the participants with information from which they may make their own judgments. AHIMA 2007 Audio Seminar Series i Faculty James Richard Campbell, MD is Professor of Internal Medicine at the University of Nebraska Medical Center. -
A Novel Framework for Standardizing and Digitizing Clinical Pathways in Healthcare Information Systems
Lakehead University Knowledge Commons,http://knowledgecommons.lakeheadu.ca Electronic Theses and Dissertations Electronic Theses and Dissertations from 2009 2020 A novel framework for standardizing and digitizing clinical pathways in healthcare information systems Alahmar, Ayman http://knowledgecommons.lakeheadu.ca/handle/2453/4701 Downloaded from Lakehead University, KnowledgeCommons A Novel Framework for Standardizing and Digitizing Clinical Pathways in Healthcare Information Systems by Ayman Alahmar A thesis presented to Lakehead University in fulfillment of the thesis requirement for the degree of Doctor of Philosophy in Electrical and Computer Engineering Thunder Bay, Ontario, Canada, 2020 © Ayman Alahmar 2020 Examining Committee Membership The following served on the Examining Committee for this thesis. The decision of the Examining Committee is by majority vote. External Examiner: Dr. Carson Kai-Sang Leung Professor, Dept. of Computer Science, University of Manitoba Supervisor: Dr. Rachid Benlamri Professor, Dept. of Software Engineering, Lakehead University Internal Member: Dr. Abdulsalam Yassine Assistant Professor, Dept. of Software Engineering, Lakehead University Internal-External Member: Dr. Salama Ikki Associate Professor, Dept. of Electrical Engineering, Lakehead University ii I hereby declare that I am the sole author of this thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. iii Abstract Most healthcare institutions are reorganizing their healthcare delivery systems based on Clinical Pathways (CPs). CPs are medical management plans designed to standardize medical activities, reduce cost, optimize resource usage, and improve quality of service. However, most CPs are still paper-based and not fully integrated with Health Information Systems (HISs). -
Implementing the SCCI Standard: SNOMED CT V 0.7 Draft 13/09/2016
Document filename: Implementing the SCCI Standard SNOMED CT Classifications and Terminology Directorate / Programme Project SCCI ISN Development Service Document Reference <insert> Project Manager Denise Downs Status Draft Owner Lynn Bracewell Version 0.7 Author Denise Downs Version issue date 13/09/2016 Implementing the SCCI Standard: SNOMED CT An up-to-date version of this document can be found at on the UKTC web pages. Copyright ©2016 Health and Social Care Information Centre Page 1 of 44 The Health and Social Care Information Centre is a non-departmental body created by statute, also known as NHS Digital. Implementing the SCCI Standard: SNOMED CT v 0.7 Draft 13/09/2016 Document Management Revision History Version Date Summary of Changes 0.1 16/03/2016 Document Creation 0.2 02/04/2016 Address review feedback 0.3 03/06/2016 Further development to include primary care requirements 0.4 20/06/2016 Incorporating feedback following SCCI discussions on the standard 0.5 11/07/2016 Incorporating feedback from internal reviewers 0.6 15/08/2016 Incorporating feedback from internals Incorporating comments from externals responding to the burden 0.7 12/09/2016 assessment, and rebranding. Includes clinical safety statement. Reviewers This document must be reviewed by the following people: Reviewer name Title / Responsibility Date Version 0.1 Terminology Ian Spiers Implementation 01-Aug-2016 0.5 Specialist 0.7 0.2 Senior Terminology Andrew Perry Implementation 01-Aug-2016 0.5 Specialist 0.7 Head of SNOMED CT 0.4 Ian Arrowsmith 23-Jun-2016 Implementation 0.7 Principal Classifications Hazel Brear 01-Jul-2016 0.3 Specialist Senior Terminology Stuart Abbott 23-Jun-2016 0.3 Specialist Principal Terminology Ed Cheetham 12-Aug-2016 0.5 Specialist 08-July-206 0.4 Gerry Firkin SCCI advisor 12-Aug-2016 0.5 CCIO, Cambridge 26-Aug-2016 Sections of 0.6 Afzal Chaudhry University Hospitals 09-Sept-2016 0.7 NHS Digital, Clinical Clinical safety Hannah McCann 13-Sept-2016 Safety Engineer section of 0.7 Copyright © 2016 Health and Social Care Information Centre.