South Atlantic Tidal Wetlands
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Alternative Stable States of Tidal Marsh Vegetation Patterns and Channel Complexity
ECOHYDROLOGY Ecohydrol. (2016) Published online in Wiley Online Library (wileyonlinelibrary.com) DOI: 10.1002/eco.1755 Alternative stable states of tidal marsh vegetation patterns and channel complexity K. B. Moffett1* and S. M. Gorelick2 1 School of the Environment, Washington State University Vancouver, Vancouver, WA, USA 2 Department of Earth System Science, Stanford University, Stanford, CA, USA ABSTRACT Intertidal marshes develop between uplands and mudflats, and develop vegetation zonation, via biogeomorphic feedbacks. Is the spatial configuration of vegetation and channels also biogeomorphically organized at the intermediate, marsh-scale? We used high-resolution aerial photographs and a decision-tree procedure to categorize marsh vegetation patterns and channel geometries for 113 tidal marshes in San Francisco Bay estuary and assessed these patterns’ relations to site characteristics. Interpretation was further informed by generalized linear mixed models using pattern-quantifying metrics from object-based image analysis to predict vegetation and channel pattern complexity. Vegetation pattern complexity was significantly related to marsh salinity but independent of marsh age and elevation. Channel complexity was significantly related to marsh age but independent of salinity and elevation. Vegetation pattern complexity and channel complexity were significantly related, forming two prevalent biogeomorphic states: complex versus simple vegetation-and-channel configurations. That this correspondence held across marsh ages (decades to millennia) -
Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
Exploring Our Wonderful Wetlands Publication
Exploring Our Wonderful Wetlands Student Publication Grades 4–7 Dear Wetland Students: Are you ready to explore our wonderful wetlands? We hope so! To help you learn about several types of wetlands in our area, we are taking you on a series of explorations. As you move through the publication, be sure to test your wetland wit and write about wetlands before moving on to the next exploration. By exploring our wonderful wetlands, we hope that you will appreciate where you live and encourage others to help protect our precious natural resources. Let’s begin our exploration now! Southwest Florida Water Management District Exploring Our Wonderful Wetlands Exploration 1 Wading Into Our Wetlands ................................................Page 3 Exploration 2 Searching Our Saltwater Wetlands .................................Page 5 Exploration 3 Finding Out About Our Freshwater Wetlands .............Page 7 Exploration 4 Discovering What Wetlands Do .................................... Page 10 Exploration 5 Becoming Protectors of Our Wetlands ........................Page 14 Wetlands Activities .............................................................Page 17 Websites ................................................................................Page 20 Visit the Southwest Florida Water Management District’s website at WaterMatters.org. Exploration 1 Wading Into Our Wetlands What exactly is a wetland? The scientific and legal definitions of wetlands differ. In 1984, when the Florida Legislature passed a Wetlands Protection Act, they decided to use a plant list containing plants usually found in wetlands. We are very fortunate to have a lot of wetlands in Florida. In fact, Florida has the third largest wetland acreage in the United States. The term wetlands includes a wide variety of aquatic habitats. Wetland ecosystems include swamps, marshes, wet meadows, bogs and fens. Essentially, wetlands are transitional areas between dry uplands and aquatic systems such as lakes, rivers or oceans. -
Freshwater Marsh and Coastal Salt Marsh. Both
MARSH VEGETATION COMMUNITY There are two types of Marsh lands in San Diego County; Freshwater Marsh and Coastal Salt Marsh. Both of these communities are very important for wildlife, and both have had extensive reductions due to channelization, dredging and vegetation removal. Both communities have been reduced in area by 85-90 percent of their original area to less than 1,000 acres total. Coastal Salt Marsh is found within the tidal zone on the edge of lagoons and bays. The major locations of this community are the Tijuana Estuary, Penasquitos Lagoon and the mouth of the Santa Margarita River. Dominant plants in Coastal Salt Marsh are Glasswort (Salicornia), Alkali heath (Frankenia), Salt grass and Cordgrass. Two notable endangered birds occur within this community, the Light footed clapper rail and the Belding’s savannah sparrow. However, the Marsh lands are also important for shorebirds and the naturally occurring flow channels within Coastal Salt Marsh are important spawning areas for a number of fish species. Freshwater Marsh land is found along stream courses and near Riparian wetland areas. It was originally found near natural springs and ponded areas within the major stream channels. It has been affected by channelization and clearing of vegetation within stream channels. Dominant plants within Freshwater Marsh include rushes, cattails, bulrushes (or tules) and several species of small willows. There is often open water in depressions or natural springs. Freshwater Marsh is home to a number of species of birds including the Yellowthroat, a species of Warbler, several species of small herons as well as rails. Freshwater Marsh in its natural state has also served as habitat for native frog species, several of which are now endangered. -
Ecosystem Element Conceptual Model Tidal Marsh
Sacramento-San Joaquin Delta Regional Ecosystem Restoration Implementation Plan Ecosystem Element Conceptual Model Tidal Marsh Prepared by: Ronald T. Kneib, University of Georgia Marine Institute [email protected] and • Charles A. Simenstad, School of Aquatic & Fisheries Sciences, University of Washington • Matt L. Nobriga, CALFED Science Program • Drew M. Talley, San Francisco Bay National Estuarine Research Reserve, San Francisco State University, Romberg Tiburon Center Date of Model: October 2008 Status of Peer Review: Completed peer review on October 2008. Model content and format are suitable and model is ready for use in identifying and evaluating restoration actions. Suggested Citation: Kneib R, Simenstad C, Nobriga M, Talley D. 2008. Tidal marsh conceptual model. Sacramento (CA): Delta Regional Ecosystem Restoration Implementation Plan. For further inquiries on the DRERIP conceptual models, please contact Brad Burkholder at [email protected] or Steve Detwiler at [email protected]. PREFACE This Conceptual Model is part of a suite of conceptual models which collectively articulate the current scientific understanding of important aspects of the Sacramento-San Joaquin River Delta ecosystem. The conceptual models are designed to aid in the identification and evaluation of ecosystem restoration actions in the Delta. These models are designed to structure scientific information such that it can be used to inform sound public policy. The Delta Conceptual Models include both ecosystem element models (including process, habitat, and stressor models) and species life history models. The models were prepared by teams of experts using common guidance documents developed to promote consistency in the format and terminology of the models http://www.delta.dfg.ca.gov/erpdeltaplan/science_process.asp . -
Responses of Tidal Freshwater and Brackish Marsh Macrophytes to Pulses of Saline Water Simulating Sea Level Rise and Reduced Discharge
Wetlands (2018) 38:885–891 https://doi.org/10.1007/s13157-018-1037-2 ORIGINAL RESEARCH Responses of Tidal Freshwater and Brackish Marsh Macrophytes to Pulses of Saline Water Simulating Sea Level Rise and Reduced Discharge Fan Li1 & Steven C. Pennings1 Received: 7 June 2017 /Accepted: 16 April 2018 /Published online: 25 April 2018 # Society of Wetland Scientists 2018 Abstract Coastal low-salinity marshes are increasingly experiencing periodic to extended periods of elevated salinities due to the com- bined effects of sea level rise and altered hydrological and climatic conditions. However, we lack the ability to predict detailed vegetation responses, especially for saline pulses that are more realistic in nature than permanent saline presses. In this study, we exposed common freshwater and brackish plants to different durations (1–31 days per month for 3 months) of saline water (salinity of 5). We found that Zizaniopsis miliacea was more tolerant to salinity than the other two freshwater species, Polygonum hydropiperoides and Pontederia cordata. We also found that Zizaniopsis miliacea belowground and total biomass appeared to increase with salinity pulses up to 16 days in length, although this relationship was quite variable. Brackish plants, Spartina cynosuroides, Schoenoplectus americanus and Juncus roemerianus, were unaffected by the experimental treatments. Our ex- periment did not evaluate how competitive interactions would further affect responses to salinity but our results suggest the hypothesis that short pulses of saline water will increase the cover of Zizaniopsis miliacea and decrease the cover of Polygonum hydropiperoides and Pontederia cordata in tidal freshwater marshes, thereby reducing diversity without necessarily affecting total plant biomass. -
Population Ecology of the Gulf Ribbed Mussel Across a Salinity Gradient: Recruitment, Growth and Density 1 2 3, AARON HONIG, JOHN SUPAN, and MEGAN LA PEYRE
Population ecology of the gulf ribbed mussel across a salinity gradient: recruitment, growth and density 1 2 3, AARON HONIG, JOHN SUPAN, AND MEGAN LA PEYRE 1School of Renewable Natural Resources, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA 2Louisiana Sea Grant, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA 3U.S. Geological Survey, Louisiana Cooperative Fish and Wildlife Research Unit, School of Renewable Natural Resources, Louisiana State University Agricultural Center, Baton Rouge, Louisiana 70803 USA Citation: Honig, A., J. Supan, and M. La Peyre. 2015. Population ecology of the gulf ribbed mussel across a salinity gradient: recruitment, growth and density. Ecosphere 6(11):226. http://dx.doi.org/10.1890/ES14-00499.1 Abstract. Benthic intertidal bivalves play an essential role in estuarine ecosystems by contributing to habitat provision, water filtration, and promoting productivity. As such, changes that impact population distributions and persistence of local bivalve populations may have large ecosystem level consequences. Recruitment, growth, mortality, population size structure and density of the gulf coast ribbed mussel, Geukensia granosissima, were examined across a salinity gradient in southeastern Louisiana. Data were collected along 100-m transects at interior and edge marsh plots located at duplicate sites in upper (salinity ;4 psu), central (salinity ;8 psu) and lower (salinity ;15 psu) Barataria Bay, Louisiana, U.S.A. Growth, mortality and recruitment were measured in established plots from April through November 2012. Mussel densities were greatest within the middle bay (salinity ;8) regardless of flooding regime, but strongly associated with highest stem densities of Juncus roemerianus vegetation. Mussel recruitment, growth, size and survival were significantly higher at mid and high salinity marsh edge sites as compared to all interior marsh and low salinity sites. -
Mangrove Elevation-Sea Level Rise Response Model
Mangrove sea-level rise response modeling to inform planning Karen Thorne & Kevin Buffington USGS Western Ecological Research Center RAE Conference December 12th, 10:30-12 “A Web-Based Interactive Decision-Support Tool for Adaptation of Coastal Urban and Natural Ecosystems (ACUNE) in Southwest Florida” Project and Science Lead: Peter Sheng, University of Florida ([email protected]) Coordination Lead: Michael Savarese, Florida Gulf Coast University ([email protected]) Team: Christine Angelini, Mike Barry, Kevin Buffington, Justin Davis, Felix Jose, Ken Krause, David Letson, Vladimir Paramygin, Karen Thorne, Chuen “Andy” Hsu, Adail Rivera-Nieves, Sean Sharp, Kun Yang We are developing ACUNE to enable Adaption of Coastal Urban and Natural Systems for A Sustainable & Economically Healthy SW Florida in the Context of Increasing Future Inundation Risk Study Domain Largest Mangrove Forest in Gulf of Mexico region Ecosystem Services: Ecosystem Diversity, Fishery Habitat, Flood Protection Coastal Wetland Vulnerability to Sea-level rise • Projected sea-level rise pose a risk to coastal wetlands, including tidal marshes and mangroves • Mangroves provide wildlife habitat and valuable ecosystem services, including protecting infrastructure from flooding and storms • Mangroves provide a lot of carbon storage • Coastal wetlands require mineral and organic sediment inputs to build elevations to keep pace with sea-level rise. Red, white, and black mangroves in FL Mangrove ecosystems From: Lee et al. Global Ecology and Biogeography, 2014, 23: 726–743 -
Spatial Scale and Abundance Patterns of Large Fish Communities in Freshwater Marshes of the Florida Everglades
WETLANDS, Vol. 24, No. 3, September 2004, pp. 652±664 q 2004, The Society of Wetland Scientists SPATIAL SCALE AND ABUNDANCE PATTERNS OF LARGE FISH COMMUNITIES IN FRESHWATER MARSHES OF THE FLORIDA EVERGLADES John H. Chick1, Carl R. Ruetz III2, and Joel C. Trexler Department of Biological Sciences, Florida International University Miami, Florida, USA 33199 1 Present address: Great Rivers Field Station Illinois Natural History Survey 8450 Montclair Ave. Brighton, Illinois, USA 62012 E-mail: [email protected] 2 Present address: Annis Water Resource Institute Grand Valley State University 740 West Shoreline Drive Muskegon, Michigan, USA 49441 Abstract: Anthropogenic habitat alterations and water-management practices have imposed an arti®cial spatial scale onto the once contiguous freshwater marshes of the Florida Everglades. To gain insight into how these changes may affect biotic communities, we examined whether variation in the abundance and community structure of large ®shes (SL . 8 cm) in Everglades marshes varied more at regional or intra- regional scales, and whether this variation was related to hydroperiod, water depth, ¯oating mat volume, and vegetation density. From October 1997 to October 2002, we used an airboat electro®sher to sample large ®shes at sites within three regions of the Everglades. Each of these regions is subject to unique water- management schedules. Dry-down events (water depth , 10 cm) occurred at several sites during spring in 1999, 2000, 2001, and 2002. The 2001 dry-down event was the most severe and widespread. Abundance of several ®shes decreased signi®cantly through time, and the number of days post-dry-down covaried signif- icantly with abundance for several species. -
Salt Marsh Monitoring by The
SaltSalt MarshMarsh MonitoringMonitoring byby thethe U.S.U.S. FishFish && WildlifeWildlife ServiceService’’ss NortheastNortheast RegionRegion Ralph Tiner Regional Wetland Coordinator U.S. Fish and Wildlife Service-Northeast Region February 2010 TypesTypes ofof MonitoringMonitoring RemotelyRemotely sensedsensed MonitoringMonitoring Area and type changes (e.g., trends analysis) Can cover large or small areas OnOn--thethe--groundground MonitoringMonitoring Addressing processes (accretion, erosion, subsidence, salt balance, etc.) Analyzing vegetation and soil changes Plot analysis Reference wetlands Evaluating wildlife habitat RemotelyRemotely SensedSensed MonitoringMonitoring NWINWI usesuses aerialaerial imageryimagery toto tracktrack wetlandwetland changeschanges inin wetlandwetland typetype WetlandWetland StatusStatus && TrendsTrends StudiesStudies == aa typetype ofof monitoringmonitoring For large geographic areas Statistical Sampling – analyze changes in 4-square mile plots; generate estimates For small areas Area-based Analysis –analyze complete area for changes over time RegionRegion vsvs LocalLocal ReportsReports CanfieldCanfield Cove,Cove, CTCT 19741974 20042004 Canfield Island Cove 60 50 40 s e 30 Acr 20 10 0 1974 1981 1986 1990 1995 2000 2004 Low Marsh High Marsh Flat ConsiderationsConsiderations forfor SiteSite--specificspecific MonitoringMonitoring SpecialSpecial aerialaerial imageryimagery LowLow tidetide PeakPeak ofof growinggrowing seasonseason NormalNormal issuesissues re:re: qualityquality (e.g.,(e.g., -
Comparison of Geukensia Demissa Populations in Rhode Island Fringe Salt Marshes with Varying Nitrogen Loads
MARINE ECOLOGY PROGRESS SERIES Vol. 320: 101–108, 2006 Published August 29 Mar Ecol Prog Ser Comparison of Geukensia demissa populations in Rhode Island fringe salt marshes with varying nitrogen loads Marnita M. Chintala*, Cathleen Wigand, Glen Thursby United States Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, 27 Tarzwell Drive, Narragansett, Rhode Island 02882, USA ABSTRACT: Increased residential development in coastal watersheds has led to increases in anthro- pogenic nitrogen inputs into estuaries. Sessile bivalves are good candidate organisms to examine nitrogen enrichment effects on consumers because they contribute significantly to material transport from pelagic to benthic systems. We examined condition index (CI), individual dry weight, density, and total biomass in the ribbed mussel Geukensia demissa (Dillwyn), from 10 marsh sites within Narragansett Bay, Rhode Island, subject to varying watershed sub-basin nitrogen loadings. We tested hypotheses that condition and population attributes of G. demissa are driven by watershed sub-basin nitrogen load. There was no clear relationship between the mussel CI and nitrogen load. G. demissa density and total biomass did increase significantly with increases in nitrogen load. Responses in individual mussel dry weight might be an indirect effect of increased nitrogen loading due to eutrophication-induced changes in food availability. Increased nitrogen loads could be increasing -
Ecology of Freshwater and Estuarine Wetlands: an Introduction
ONE Ecology of Freshwater and Estuarine Wetlands: An Introduction RebeCCA R. SHARITZ, DAROLD P. BATZER, and STeveN C. PENNINGS WHAT IS A WETLAND? WHY ARE WETLANDS IMPORTANT? CHARACTERISTicS OF SeLecTED WETLANDS Wetlands with Predominantly Precipitation Inputs Wetlands with Predominately Groundwater Inputs Wetlands with Predominately Surface Water Inputs WETLAND LOSS AND DeGRADATION WHAT THIS BOOK COVERS What Is a Wetland? The study of wetland ecology can entail an issue that rarely Wetlands are lands transitional between terrestrial and needs consideration by terrestrial or aquatic ecologists: the aquatic systems where the water table is usually at or need to define the habitat. What exactly constitutes a wet- near the surface or the land is covered by shallow water. land may not always be clear. Thus, it seems appropriate Wetlands must have one or more of the following three to begin by defining the wordwetland . The Oxford English attributes: (1) at least periodically, the land supports predominately hydrophytes; (2) the substrate is pre- Dictionary says, “Wetland (F. wet a. + land sb.)— an area of dominantly undrained hydric soil; and (3) the substrate is land that is usually saturated with water, often a marsh or nonsoil and is saturated with water or covered by shallow swamp.” While covering the basic pairing of the words wet water at some time during the growing season of each year. and land, this definition is rather ambiguous. Does “usu- ally saturated” mean at least half of the time? That would This USFWS definition emphasizes the importance of omit many seasonally flooded habitats that most ecolo- hydrology, soils, and vegetation, which you will see is a gists would consider wetlands.