Deep Carbon Cycle Through Five Reactions
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Lipid Analysis of CO2-Rich Subsurface Aquifers Suggests an Autotrophy-Based Deep Biosphere with Lysolipids Enriched in CPR Bacteria
The ISME Journal (2020) 14:1547–1560 https://doi.org/10.1038/s41396-020-0624-4 ARTICLE Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria 1,2 3,4 1,3 3 3 Alexander J. Probst ● Felix J. Elling ● Cindy J. Castelle ● Qingzeng Zhu ● Marcus Elvert ● 5,6 6 1 7,9 7 Giovanni Birarda ● Hoi-Ying N. Holman ● Katherine R. Lane ● Bethany Ladd ● M. Cathryn Ryan ● 8 3 1 Tanja Woyke ● Kai-Uwe Hinrichs ● Jillian F. Banfield Received: 20 November 2018 / Revised: 5 February 2020 / Accepted: 25 February 2020 / Published online: 13 March 2020 © The Author(s) 2020. This article is published with open access Abstract Sediment-hosted CO2-rich aquifers deep below the Colorado Plateau (USA) contain a remarkable diversity of uncultivated microorganisms, including Candidate Phyla Radiation (CPR) bacteria that are putative symbionts unable to synthesize membrane lipids. The origin of organic carbon in these ecosystems is unknown and the source of CPR membrane lipids remains elusive. We collected cells from deep groundwater brought to the surface by eruptions of Crystal Geyser, sequenced 1234567890();,: 1234567890();,: the community, and analyzed the whole community lipidome over time. Characteristic stable carbon isotopic compositions of microbial lipids suggest that bacterial and archaeal CO2 fixation ongoing in the deep subsurface provides organic carbon for the complex communities that reside there. Coupled lipidomic-metagenomic analysis indicates that CPR bacteria lack complete lipid biosynthesis pathways but still possess regular lipid membranes. These lipids may therefore originate from other community members, which also adapt to high in situ pressure by increasing fatty acid unsaturation. -
CO2 Derivatives of Molecular Tin Compounds. Part 1: † Hemicarbonato and Carbonato Complexes
inorganics Review CO2 Derivatives of Molecular Tin Compounds. Part 1: y Hemicarbonato and Carbonato Complexes Laurent Plasseraud Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB), UMR-CNRS 6302, Université de Bourgogne Franche-Comté, 9 avenue A. Savary, F-21078 Dijon, France; [email protected] Paper dedicated to Professor Georg Süss-Fink on the occasion of his 70th birthday. y Received: 31 March 2020; Accepted: 24 April 2020; Published: 29 April 2020 Abstract: This review focuses on organotin compounds bearing hemicarbonate and carbonate ligands, and whose molecular structures have been previously resolved by single-crystal X-ray diffraction analysis. Most of them were isolated within the framework of studies devoted to the reactivity of tin precursors with carbon dioxide at atmospheric or elevated pressure. Alternatively, and essentially for the preparation of some carbonato derivatives, inorganic carbonate salts such as K2CO3, Cs2CO3, Na2CO3 and NaHCO3 were also used as coreagents. In terms of the number of X-ray structures, carbonate compounds are the most widely represented (to date, there are 23 depositions in the Cambridge Structural Database), while hemicarbonate derivatives are rarer; only three have so far been characterized in the solid-state, and exclusively for diorganotin complexes. For each compound, the synthesis conditions are first specified. Structural aspects involving, in particular, the modes of coordination of the hemicarbonato and carbonato moieties and the coordination geometry around tin are then described and illustrated (for most cases) by showing molecular representations. Moreover, when they were available in the original reports, some characteristic spectroscopic data are also given for comparison (in table form). -
Carbonation and Decarbonation Reactions: Implications for Planetary Habitability K
American Mineralogist, Volume 104, pages 1369–1380, 2019 Carbonation and decarbonation reactions: Implications for planetary habitability k E.M. STEWART1,*,†, JAY J. AGUE1, JOHN M. FERRY2, CRAIG M. SCHIFFRIES3, REN-BIAO TAO4, TERRY T. ISSON1,5, AND NOAH J. PLANAVSKY1 1Department of Geology & Geophysics, Yale University, P.O. Box 208109, New Haven, Connecticut 06520-8109, U.S.A. 2Department of Earth and Planetary Sciences, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, U.S.A. 3Geophysical Laboratory, Carnegie Institution for Science, 5251 Broad Branch Road NW, Washington, D.C. 20015, U.S.A. 4School of Earth and Space Sciences, MOE Key Laboratory of Orogenic Belt and Crustal Evolution, Peking University, Beijing 100871, China 5School of Science, University of Waikato, 101-121 Durham Street, Tauranga 3110, New Zealand ABSTRACT The geologic carbon cycle plays a fundamental role in controlling Earth’s climate and habitability. For billions of years, stabilizing feedbacks inherent in the cycle have maintained a surface environ- ment that could sustain life. Carbonation/decarbonation reactions are the primary mechanisms for transferring carbon between the solid Earth and the ocean–atmosphere system. These processes can be broadly represented by the reaction: CaSiO3 (wollastonite) + CO2 (gas) ↔ CaCO3 (calcite) + SiO2 (quartz). This class of reactions is therefore critical to Earth’s past and future habitability. Here, we summarize their signifcance as part of the Deep Carbon Obsevatory’s “Earth in Five Reactions” project. In the forward direction, carbonation reactions like the one above describe silicate weathering and carbonate formation on Earth’s surface. Recent work aims to resolve the balance between silicate weathering in terrestrial and marine settings both in the modern Earth system and through Earth’s history. -
Earth Catastrophes and Their Impact on the Carbon Cycle
Earth Catastrophes and their Impact on the Carbon Cycle Celina A. Suarez1, Marie Edmonds2, and Adrian P. Jones3 1811-5209/19/0015-0301$2.50 DOI: 10.2138/gselements.15.5.301 arbon is one of the most important elements on Earth. It is the basis search for catastrophic causes of of life, it is stored and mobilized throughout the Earth from core to perturbations in the carbon cycle ranges from the tipping points Ccrust and it is the basis of the energy sources that are vital to human reached during slow accretion civilization. This issue will focus on the origins of carbon on Earth, the roles of tectonic plates into megacon- played by large-scale catastrophic carbon perturbations in mass extinctions, tinents, to shifts in atmospheric or ocean circulation, to instanta- the movement and distribution of carbon in large igneous provinces, and neous megaenergy events deliv- the role carbon plays in icehouse–greenhouse climate transitions in deep ered by Earth’s inevitable orbital time. Present-day carbon fluxes on Earth are changing rapidly, and it is of space encounters with bolides, utmost importance that scientists understand Earth’s carbon cycle to secure to large-scale volcanism. These major events are often associated a sustainable future. with biological diversity crises and KEYWORDS: impacts, Earth’s origin, extinction, climate change, volcanism, mass extinctions. Deciphering the large igneous province complex and often faint signals of distant catastrophes requires a INTRODUCTION multidisciplinary effort and the most innovative analytical technology. Great strides have been made in quantifying the diverse world of carbon in Earth. -
Of Grignard Reagent Formation. the Surface Nature of the Reaction
286 Ace. Chem. Res. 1990,23, 286-293 Mechanism of Grignard Reagent Formation. The Surface Nature of the Reaction H. M. WALBORSKY Dittmer Laboratory of Chemistry, Florida State University, Tallahassee, Florida 32306 Received February 23, 1990 (Revised Manuscript Received May 7, 1990) The reaction of organic halides (Br, C1, I) with mag- Scheme I nesium metal to yield what is referred to today as a Kharasch-Reinmuth Mechanism for Grignard Reagent Grignard reagent has been known since the turn of the Formation century,' The name derives from its discoverer, Nobel (1)(Mg0)AMg*)2y + RX 4 [(M~'~(MQ')~~-,('MQX)+ R.] + laureate Victor Grignard. How this reagent is formed, (Mgo)x-2(MQ')2~MgX)(MgR) that is, how a magnesium atom is inserted into a car- bon-halogen bond, is the subject of this Account. ('4 (Ms0),-*(M9')2~MgX)(MgR) + + (Mg0)x-dMg*)2y+2 + 2RMgX RX + Mg - RMgX Kharasch and Reinmuth,, persuaded by the work of late under the same conditions gave Itl = 6.2 X s-l. Another system that meets the above criterion is the Gomberg and Bachmad as well as by product analyses of many Grignard formation reactions that existed in vinyl system. The lack of reactivity of vinyl halides toward SN1reactions is well-known and is exemplified the literature prior to 1954,speculated that the reaction involved radicals and that the radical reactions might by the low solvolysis rate of 2-propenyl triflate5 in 80% involve "surface adherent radicals, at least in part". The ethanol at 25 OC, kl being 9.8 X s-l. -
Deep Carbon Emissions from Volcanoes Michael R
Reviews in Mineralogy & Geochemistry Vol. 75 pp. 323-354, 2013 11 Copyright © Mineralogical Society of America Deep Carbon Emissions from Volcanoes Michael R. Burton Istituto Nazionale di Geofisica e Vulcanologia Via della Faggiola, 32 56123 Pisa, Italy [email protected] Georgina M. Sawyer Laboratoire Magmas et Volcans, Université Blaise Pascal 5 rue Kessler, 63038 Clermont Ferrand, France and Istituto Nazionale di Geofisica e Vulcanologia Via della Faggiola, 32 56123 Pisa, Italy Domenico Granieri Istituto Nazionale di Geofisica e Vulcanologia Via della Faggiola, 32 56123 Pisa, Italy INTRODUCTION: VOLCANIC CO2 EMISSIONS IN THE GEOLOGICAL CARBON CYCLE Over long periods of time (~Ma), we may consider the oceans, atmosphere and biosphere as a single exospheric reservoir for CO2. The geological carbon cycle describes the inputs to this exosphere from mantle degassing, metamorphism of subducted carbonates and outputs from weathering of aluminosilicate rocks (Walker et al. 1981). A feedback mechanism relates the weathering rate with the amount of CO2 in the atmosphere via the greenhouse effect (e.g., Wang et al. 1976). An increase in atmospheric CO2 concentrations induces higher temperatures, leading to higher rates of weathering, which draw down atmospheric CO2 concentrations (Ber- ner 1991). Atmospheric CO2 concentrations are therefore stabilized over long timescales by this feedback mechanism (Zeebe and Caldeira 2008). This process may have played a role (Feulner et al. 2012) in stabilizing temperatures on Earth while solar radiation steadily increased due to stellar evolution (Bahcall et al. 2001). In this context the role of CO2 degassing from the Earth is clearly fundamental to the stability of the climate, and therefore to life on Earth. -
Jesse H. Ausubel the Liberation of the Environment
Jesse H. Ausubel The Liberation of the Environment Di Renzo Dialogues in Science The Dialogues: Science The books of this series result from extensive discussions with the author, who, stimulated by our questions, similar to those which a reader might wish to pose, develops clearly the themes of his professional career. ©2014 Di Renzo Editore Viale Manzoni 59 00185 Roma Tel. 06/77 20 90 20 Fax 06/70 47 40 67 E‐mail: [email protected] Internet: http://www.direnzo.it JESSE H. AUSUBEL La liberazione dell’ambiente Di Renzo Editore Table of Contents My Roots..................................................................................................................................1 My Childhood...........................................................................................................................4 University Years........................................................................................................................8 The US National Academy of Sciences and the First United Nations World Climate Conference..............................................................12 A Bridge over the Cold War: The International Institute for Applied Systems Analysis ........14 Global Warming and Climate Change............................................................. .......................17 The mid‐80s: A General Theory of Environmental Problems.................................................20 A Question of Efficiency.........................................................................................................22 -
Diamond Formation in the Deep Lower Mantle
www.nature.com/scientificreports OPEN Diamond formation in the deep lower mantle: a high-pressure reaction of MgCO3 and SiO2 Received: 30 August 2016 Fumiya Maeda1, Eiji Ohtani1,2, Seiji Kamada1,3, Tatsuya Sakamaki1, Naohisa Hirao4 & Accepted: 07 December 2016 Yasuo Ohishi4 Published: 13 January 2017 Diamond is an evidence for carbon existing in the deep Earth. Some diamonds are considered to have originated at various depth ranges from the mantle transition zone to the lower mantle. These diamonds are expected to carry significant information about the deep Earth. Here, we determined the phase relations in the MgCO3-SiO2 system up to 152 GPa and 3,100 K using a double sided laser- heated diamond anvil cell combined with in situ synchrotron X-ray diffraction. MgCO3 transforms from magnesite to the high-pressure polymorph of MgCO3, phase II, above 80 GPa. A reaction between MgCO3 phase II and SiO2 (CaCl2-type SiO2 or seifertite) to form diamond and MgSiO3 (bridgmanite or post-perovsktite) was identified in the deep lower mantle conditions. These observations suggested that the reaction of the MgCO3 phase II with SiO2 causes formation of super-deep diamond in cold slabs descending into the deep lower mantle. Carbon is circulated around the surface and interior of the Earth with subducting slabs and volcanic eruptions; subduction carries carbon-bearing rocks to the Earth’s interior and volcanic eruption expels carbon-bearing gas, lavas and rocks from the interior of the Earth1. The flux of subducted carbon within oceanic plates is estimated to be more than 5 Tmol/yr, almost twice as large as the expelled-carbon flux, 2–3 Tmol/yr, through arc magmatism2. -
Submitted to the Requirements For
THE SYNTIIE$IS OP C LABELLED 2, 4-DICI LOROi-EENOÇYAGETIC ACID by ERNEST GEORGE AWORSKI A THESIS submitted to OREGON STA1 COLLEGE in partial fulfillment or the requirements for the degree of MAS2R 0F SCIENCE June 1950 PROVED: professor ot Clie'thlstry Department In Charge of Major Head of Department of' Chemistry Chairman of School Graduate Conimittee Dean of Graduate School Date thesis is presented Typed by Clara Homyar ACNOWLEDGMNTS The author wishes to express his appreciation to Dr. oseph S. Butts for his eneouragem.ent and generous direction in r4laking this work possible. Grateful aoknowledgnient is given to Dr. Albert V. Logan for his assistance in methodical diff i- culties. This research project was supported by an Atoniic inergy Commission grant carried under Navy contract N7-onr-3 7602. TABLE OF CONTENTS Page I. INTRODUCTION I II. STNTHESI OF ALPHA METH'LENB LABELLED2,14-D . , * 4 A. Apparatus ......*,*., B Method . 7 C. Analysis and }hysica1 Constants 3.7 In. StfliSIs OF C CABBOXTh LABELLED 2LD 19 A. Apparatus . 19 B )kethoc3. , , , , , 23. C. Analysis and PhjsLoa3. Constants 26 Iv DISCUSSION . , , . , , V. SUL2&RY . e e . 30 LTTERATUREOITED .......... 31 I1N1)I. 3 2 THE SYNTHESIS OF C LABELLED 2, 4-DICHLOROHENOXThCETIC ACID I. INTRODUCTION The synthesis or C labelled 2,4-dichlorophen- oxyacetic acid (hereafter referred to as 2,4V-D) was undertaken In order to study the process by which lt exerts its selective herbicidal effect on soiae noxious plants. Should this method prove fruitful, it would be useful for a more systematic approach to the study of ooitounds having potential herbicidal properties. -
Jie (Jackie) Li
Jie (Jackie) Li Jie (Jackie) Li Department of Earth and Environmental Sciences, University of Michigan 1100 N. University Ave., Ann Arbor MI 48109 +1 734 6157317, [email protected] http:/www.earth.lsa.umich.edu/jackieli/ EDUCATION 1992 University of Science and Technology of China, B.S. Geochemistry 1997 Harvard University, M.A. Geophysics 1998 Harvard University. Ph.D. Earth and Planetary Sciences POSITIONS HELD University of Michigan 2016- Professor 2010-2016 Associate Professor University of Illinois 2009 Associate Professor 2003-2009 Assistant Professor Carnegie Institution for Science 2000-2003 Postdoctoral Associate, 1998-2000 Gilbert Postdoctoral Fellow 2018 Stanford University, Blaustein Visiting Adjunct Professor, 2013 University of Western Australia, Short-Stay Visitor, Institute of Advanced Studies, 2012 Tohoku University, Japan Global Center of Excellence Scholar, 2012 Columbia University, Tharp Fellow 1996-1997 Harvard University, Resident Tutor, Winthrop House AWARDS AND HONORS 2013 Kavli Fellow, National Academy of Sciences 2010 Fellow, Mineralogical Society of America 2009-2010 COMPRES (Consortium for Materials Properties Research) Distinguished Lecturer 2009 Helen Corley Petit Scholar, University of Illinois, College of Liberal Arts and Sciences 2009-2010 Center for Advanced Study Fellow, University of Illinois 2003-2008 Teachers Ranked as Excellent by Their Students, University of Illinois 1992 Presidential Guo Morou Prize, University of Science and Technology of China PROFESSIONAL SOCIETY MEMBERSHIP 2016- American Association -
Part I. Inversion of Secondary Cyclic Grignard Reagents
This dissertation has been , 69-11,692 microfilmed exactly as received PECHHOLD, Engelbert, 1933- STUDIES OF THE BEHAVIOR AND GENERATION OF GARB ANIONS: PART I. INVERSION OF SECONDARY CYCLIC GRIGNARD REAGENTS. PART II. FRAGMENTATION OF AZOFORMATE SALTS AND ACYLAZO COMPOUNDS WITH BASES. The Ohio State University, Ph.D., 1968 Chemistry, organic University Microfilms, Inc., Ann Arbor, Michigan ©Copyright "by- Engelbert Pechhold 1969 STUDIES OF THE BEHAVIOR MD GENERATION OF CARBANIONS PART I. INVERSION OF SECONDARY CYCLIC GRIGNARD REAGENTS PART II. FRAGMENTATION OF AZOFORMATE SADIS AND ACYLAZO COMPOUNDS WITH BASES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Engelbert Pechhold * # # * * # The Ohio State University 1968 Approved by •pV-gpa.-t— Adviser Department of Chemistry DEDICATION To my wife, Ingrid, and my parents, whose love, understanding, and encouragement have made this venture possible. ii ACKNOWLEDaEMElWS I -wish to express my deepest appreciation to Professor Gideon Fraenkel for suggestinf^ this problem, and for his guidance and encouragement throughout the course of this research. His assistance in the preparation of this dissertation is gratefully acknowledged. It is an understatement to say that without his un usual courage of conviction and high standards for academic perfor mance, this work could not have come into being. I owe special debt of gratitude to my colleagues for many suimtü-ating discussions of chemical matters and otherwise. In particular, I wish to express my gratitute to Dr. Don Dix, Dr. Dave Mams, and James Morton, who gave me much insight in ny research. -
Nature and Extent of the Deep Biosphere Frederick S
Reviews in Mineralogy & Geochemistry Vol. 75 pp. 547-574, 2013 17 Copyright © Mineralogical Society of America Nature and Extent of the Deep Biosphere Frederick S. Colwell College of Earth, Ocean, and Atmospheric Sciences Oregon State University Corvallis, Oregon 97331-5503, U.S.A. [email protected] Steven D’Hondt Graduate School of Oceanography University of Rhode Island Narragansett, Rhode Island 02882, U.S.A. [email protected] INTRODUCTION In the last three decades we have learned a great deal about microbes in subsurface envi- ronments. Once, these habitats were rarely examined, perhaps because so much of the life that we are concerned with exists at the surface and seems to pace its metabolic and evolutionary rhythms with the overt planetary, solar, and lunar cycles that dictate our own lives. And it cer- tainly remains easier to identify with living beings that are in our midst, most obviously strug- gling with us or against us for survival over time scales that are easiest to track using diurnal, monthly or annual periods. Yet, research efforts are drawn again and again to the subsurface to consider life there. No doubt this has been due to our parochial interests in the resources that exist there (the water, minerals, and energy) that our society continues to require and that in some cases are created or modified by microbes. However, we also continue to be intrigued by the scientific curiosities that might only be solved by going underground and examining life where it does and does not exist. But really, is life underground just a peculiarity of most life on the planet and only a re- cently discovered figment of life? Or is it actually a more prominent and fundamental, if unseen, theme for life on our planet? Our primary purpose in this chapter is to provide an incremental assembly of knowledge of subsurface life with the aim of moving us towards a more complete conceptual model of deep life on the planet.