Mg2+ Transporters in Digestive Cancers
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Regulatory Effects of Cu, Zn, and Ca on Fe Absorption: the Intricate Play Between Nutrient Transporters
Nutrients 2013, 5, 957-970; doi:10.3390/nu5030957 OPEN ACCESS nutrients ISSN 2072-6643 www.mdpi.com/journal/nutrients Review Regulatory Effects of Cu, Zn, and Ca on Fe Absorption: The Intricate Play between Nutrient Transporters Nathalie Scheers Division of Life Sciences, Food Science, Department of Chemical and Biological Engineering, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden; E-Mail: [email protected]; Tel.: +46-31-772-3821; Fax: +46-31-772-3830 Received: 4 February 2013; in revised form: 8 March 2013 / Accepted: 15 March 2013 / Published: 20 March 2013 Abstract: Iron is an essential nutrient for almost every living organism because it is required in a number of biological processes that serve to maintain life. In humans, recycling of senescent erythrocytes provides most of the daily requirement of iron. In addition, we need to absorb another 1–2 mg Fe from the diet each day to compensate for losses due to epithelial sloughing, perspiration, and bleeding. Iron absorption in the intestine is mainly regulated on the enterocyte level by effectors in the diet and systemic regulators accessing the enterocyte through the basal lamina. Recently, a complex meshwork of interactions between several trace metals and regulatory proteins was revealed. This review focuses on advances in our understanding of Cu, Zn, and Ca in the regulation of iron absorption. Ascorbate as an important player is also considered. Keywords: iron; absorption; Fe; Zn; Cu; Ca; ascorbate 1. Introduction Iron (Fe) is the second most abundant metal on earth and is a necessity for all life. Iron plays the key role in numerous enzymatic reactions due to its ease in shifting between the two common oxidation states, ferrous (Fe2+) and ferric (Fe3+) iron. -
Bioinformatic Analyses of Integral Membrane Transport Proteins Encoded Within the Genome of the Planctomycetes Species, Rhodopirellula Baltica
UC San Diego UC San Diego Previously Published Works Title Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica. Permalink https://escholarship.org/uc/item/0f85q1z7 Journal Biochimica et biophysica acta, 1838(1 Pt B) ISSN 0006-3002 Authors Paparoditis, Philipp Västermark, Ake Le, Andrew J et al. Publication Date 2014 DOI 10.1016/j.bbamem.2013.08.007 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Biochimica et Biophysica Acta 1838 (2014) 193–215 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbamem Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica Philipp Paparoditis a, Åke Västermark a,AndrewJ.Lea, John A. Fuerst b, Milton H. Saier Jr. a,⁎ a Department of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA, 92093–0116, USA b School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, 9072, Australia article info abstract Article history: Rhodopirellula baltica (R. baltica) is a Planctomycete, known to have intracellular membranes. Because of its un- Received 12 April 2013 usual cell structure and ecological significance, we have conducted comprehensive analyses of its transmembrane Received in revised form 8 August 2013 transport proteins. The complete proteome of R. baltica was screened against the Transporter Classification Data- Accepted 9 August 2013 base (TCDB) to identify recognizable integral membrane transport proteins. 342 proteins were identified with a Available online 19 August 2013 high degree of confidence, and these fell into several different classes. -
Evaluation of Response to Neoadjuvant Chemotherapy for Esophageal Cancer: PET Response Criteria in Solid Tumors Versus Response Evaluation Criteria in Solid Tumors
Journal of Nuclear Medicine, published on May 11, 2012 as doi:10.2967/jnumed.111.098699 Evaluation of Response to Neoadjuvant Chemotherapy for Esophageal Cancer: PET Response Criteria in Solid Tumors Versus Response Evaluation Criteria in Solid Tumors Masahiro Yanagawa*1, Mitsuaki Tatsumi*1,2, Hiroshi Miyata3, Eiichi Morii4, Noriyuki Tomiyama1, Tadashi Watabe2, Kayako Isohashi2, Hiroki Kato2, Eku Shimosegawa2, Makoto Yamasaki3, Masaki Mori3, Yuichiro Doki3, and Jun Hatazawa2 1Department of Radiology, Osaka University Graduate School of Medicine, Suita-city, Osaka, Japan; 2Department of Nuclear Medicine and Tracer Kinetics, Osaka University Graduate School of Medicine, Suita-city, Osaka, Japan; 3Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita-city, Osaka, Japan; and 4Department of Pathology, Osaka University Graduate School of Medicine, Suita-city, Osaka, Japan onstrate the correlation between therapeutic responses and Recently, PET response criteria in solid tumors (PERCIST) have prognosis in patients with esophageal cancer receiving neoadju- been proposed as a new standardized method to assess vant chemotherapy. However, PERCIST was found to be the chemotherapeutic response metabolically and quantitatively. strongest independent predictor of outcomes. Given the signifi- The aim of this study was to evaluate therapeutic response to cance of noninvasive radiologic imaging in formulating clinical neoadjuvant chemotherapy for locally advanced esophageal treatment strategies, PERCIST might be considered more suit- cancer, comparing PERCIST with the currently widely used able for evaluation of chemotherapeutic response to esophageal response evaluation criteria in solid tumors (RECIST). Methods: cancer than RECIST. Fifty-one patients with locally advanced esophageal cancer who Key Words: RECIST; PERCIST; 18F-FDG PET; esophageal cancer; received neoadjuvant chemotherapy (5-fluorouracil, adriamycin, response to therapy and cisplatin), followed by surgery were studied. -
Slc1a3-2A-Creert2 Mice Reveal Unique Features of Bergmann Glia and Augment a Growing Collection of Cre Drivers and Effectors In
www.nature.com/scientificreports OPEN Slc1a3‑2A‑CreERT2 mice reveal unique features of Bergmann glia and augment a growing collection of Cre drivers and efectors in the 129S4 genetic background Lech Kaczmarczyk1,2, Nicole Reichenbach2, Nelli Blank2, Maria Jonson1, Lars Dittrich2, Gabor C. Petzold2,3 & Walker S. Jackson1,2* Genetic variation is a primary determinant of phenotypic diversity. In laboratory mice, genetic variation can be a serious experimental confounder, and thus minimized through inbreeding. However, generalizations of results obtained with inbred strains must be made with caution, especially when working with complex phenotypes and disease models. Here we compared behavioral characteristics of C57Bl/6—the strain most widely used in biomedical research—with those of 129S4. In contrast to 129S4, C57Bl/6 demonstrated high within‑strain and intra‑litter behavioral hyperactivity. Although high consistency would be advantageous, the majority of disease models and transgenic tools are in C57Bl/6. We recently established six Cre driver lines and two Cre efector lines in 129S4. To augment this collection, we genetically engineered a Cre line to study astrocytes in 129S4. It was validated with two Cre efector lines: calcium indicator gCaMP5g‑tdTomato and RiboTag—a tool widely used to study cell type‑specifc translatomes. These reporters are in diferent genomic loci, and in both the Cre was functional and astrocyte‑specifc. We found that calcium signals lasted longer and had a higher amplitude in cortical compared to hippocampal astrocytes, genes linked to a single neurodegenerative disease have highly divergent expression patterns, and that ribosome proteins are non‑uniformly expressed across brain regions and cell types. -
Cellular and Molecular Signatures in the Disease Tissue of Early
Cellular and Molecular Signatures in the Disease Tissue of Early Rheumatoid Arthritis Stratify Clinical Response to csDMARD-Therapy and Predict Radiographic Progression Frances Humby1,* Myles Lewis1,* Nandhini Ramamoorthi2, Jason Hackney3, Michael Barnes1, Michele Bombardieri1, Francesca Setiadi2, Stephen Kelly1, Fabiola Bene1, Maria di Cicco1, Sudeh Riahi1, Vidalba Rocher-Ros1, Nora Ng1, Ilias Lazorou1, Rebecca E. Hands1, Desiree van der Heijde4, Robert Landewé5, Annette van der Helm-van Mil4, Alberto Cauli6, Iain B. McInnes7, Christopher D. Buckley8, Ernest Choy9, Peter Taylor10, Michael J. Townsend2 & Costantino Pitzalis1 1Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. Departments of 2Biomarker Discovery OMNI, 3Bioinformatics and Computational Biology, Genentech Research and Early Development, South San Francisco, California 94080 USA 4Department of Rheumatology, Leiden University Medical Center, The Netherlands 5Department of Clinical Immunology & Rheumatology, Amsterdam Rheumatology & Immunology Center, Amsterdam, The Netherlands 6Rheumatology Unit, Department of Medical Sciences, Policlinico of the University of Cagliari, Cagliari, Italy 7Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8TA, UK 8Rheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Birmingham B15 2WB, UK 9Institute of -
Immunohistochemical Detection of WT1 Protein in a Variety of Cancer Cells
Modern Pathology (2006) 19, 804–814 & 2006 USCAP, Inc All rights reserved 0893-3952/06 $30.00 www.modernpathology.org Immunohistochemical detection of WT1 protein in a variety of cancer cells Shin-ichi Nakatsuka1, Yusuke Oji2, Tetsuya Horiuchi3, Takayoshi Kanda4, Michio Kitagawa5, Tamotsu Takeuchi6, Kiyoshi Kawano7, Yuko Kuwae8, Akira Yamauchi9, Meinoshin Okumura10, Yayoi Kitamura2, Yoshihiro Oka11, Ichiro Kawase11, Haruo Sugiyama12 and Katsuyuki Aozasa13 1Department of Clinical Laboratory, National Hospital Organization Osaka Minami Medical Center, Kawachinagano, Osaka, Japan; 2Department of Biomedical Informatics, Osaka University Graduate School of Medicine, Suita, Osaka, Japan; 3Department of Surgery, National Hospital Organization Osaka Minami Medical Center, Kawachinagano, Osaka, Japan; 4Department of Gynecology, National Hospital Organization Osaka Minami Medical Center, Kawachinagano, Osaka, Japan; 5Department of Urology, National Hospital Organization Osaka Minami Medical Center, Kawachinagano, Osaka, Japan; 6Department of Pathology, Kochi Medical School, Kohasu, Oko-cho, Nankoku City, Kochi, Japan; 7Department of Pathology, Osaka Rosai Hospital, Sakai, Osaka, Japan; 8Department of Pathology, Osaka Medical Center and Research Institute of Maternal and Child Health, Izumi, Osaka, Japan; 9Department of Cell Regulation, Faculty of Medicine, Kagawa University, Miki-cho, Kida-gun, Kagawa, Japan; 10Department of Surgery, Osaka University Graduate School of Medicine, Suita, Osaka, Japan; 11Department of Molecular Medicine, Osaka University Graduate School of Medicine, Suita, Osaka, Japan; 12Department of Functional Diagnostic Science, Osaka University Graduate School of Medicine, Suita, Osaka, Japan and 13Department of Pathology, Osaka University Graduate School of Medicine, Suita, Osaka, Japan WT1 was first identified as a tumor suppressor involved in the development of Wilms’ tumor. Recently, oncogenic properties of WT1 have been demonstrated in various hematological malignancies and solid tumors. -
Prognostic Factors Affecting Mortality in Patients with Esophageal Gists
JBUON 2020; 25(1): 497-507 ISSN: 1107-0625, online ISSN: 2241-6293 • www.jbuon.com Email: [email protected] ORIGINAL ARTICLE Prognostic factors affecting mortality in patients with esophageal GISTs Dimitrios Schizas1, George Bagias2, Prodromos Kanavidis1, Demetrios Moris1, Eleftherios Spartalis3, Christos Damaskos3, Nikolaos Garmpis3, Ioannis Karavokyros1, Evangelos P. Misiakos4, Theodore Liakakos1 11st Department of Surgery, Laikon General Hospital, National and Kapodistrian University of Athens, Athens, Greece; 2Clinic for General, Visceral and Transplant Surgery, Hannover Medical School, Hannover, Germany; 32nd Department of Propedeutic Surgery, Laikon General Hospital, National and Kapodistrian University of Athens, Athens, Greece; 43rd Department of Surgery, Attikon University Hospital, National and Kapodistrian University of Athens, Athens, Greece. Summary Purpose: Esophageal gastrointestinal stromal tumors (54.3%), followed by tumor enucleation (45.7%). The median (GISTs) compose a very rare clinical entity, representing follow-up period was 34 months; tumor recurrence occurred 0.7% of all GISTs. Therefore, the clinicopathological factors in 18 cases (18.9%) and 19 died of disease (19.2%). The over- that affect mortality are currently not adequately examined. all survival rate was 75.8%. We found out that tumor size We reviewed individual cases of esophageal GISTs found in and high mitotic rate (>10 mitosis per hpf) were significant the literature in order to identify the prognostic factors af- prognostic factors for survival. Presence of symptoms, ul- fecting mortality. ceration, and tumor necrosis as well as tumor recurrence were also significant prognostic factors (p<0.01). Methods: MEDLINE, EMBASE, and the Cochrane Library were systematically searched to identify clinical studies and Conclusions: Esophageal GISTs’ tumor size and mitotic case reports referring to esophageal GISTs. -
Magnesium Is a Key Player in Neuronal Maturation and Neuropathology
International Journal of Molecular Sciences Review Magnesium Is a Key Player in Neuronal Maturation and Neuropathology Ryu Yamanaka 1,2 , Yutaka Shindo 1 and Kotaro Oka 1,3,4,* 1 Center for Biosciences and Informatics, School of Fundamental Science and Technology Graduate School of Science and Technology, Keio University, Yokohama, Kanagawa 223-8522, Japan 2 Faculty of Pharmaceutical Sciences, Sanyo-Onoda City University, Sanyo-Onoda, Yamaguchi 756-0884, Japan 3 Graduate Institute of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung City 80708, Taiwan 4 Waseda Research Institute for Science and Engineering, Waseda University, 2-2 Wakamatsucho, Shinjuku, Tokyo 162-8480, Japan * Correspondence: [email protected]; Tel.: +81-045-566-1789 Received: 16 June 2019; Accepted: 9 July 2019; Published: 12 July 2019 Abstract: Magnesium (Mg) is the second most abundant cation in mammalian cells, and it is essential for numerous cellular processes including enzymatic reactions, ion channel functions, metabolic cycles, cellular signaling, and DNA/RNA stabilities. Because of the versatile and universal nature of Mg2+, the homeostasis of intracellular Mg2+ is physiologically linked to growth, proliferation, differentiation, energy metabolism, and death of cells. On the cellular and tissue levels, maintaining Mg2+ within optimal levels according to the biological context, such as cell types, developmental stages, extracellular environments, and pathophysiological conditions, is crucial for development, normal functions, and diseases. Hence, Mg2+ is pathologically involved in cancers, diabetes, and neurodegenerative diseases, such as Parkinson’s disease, Alzheimer’s disease, and demyelination. In the research field regarding the roles and mechanisms of Mg2+ regulation, numerous controversies caused by its versatility and complexity still exist. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
The Diagnostic and Prognostic Value of a Liquid Biopsy for Esophageal Cancer: a Systematic Review and Meta-Analysis
cancers Review The Diagnostic and Prognostic Value of a Liquid Biopsy for Esophageal Cancer: A Systematic Review and Meta-Analysis Daisuke Matsushita 1,* , Takaaki Arigami 2 , Keishi Okubo 1, Ken Sasaki 1, Masahiro Noda 1, Yoshiaki Kita 1, Shinichiro Mori 1, Yoshikazu Uenosono 3, Takao Ohtsuka 1 and Shoji Natsugoe 4 1 Department of Digestive Surgery, Breast and Thyroid Surgery, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima 890-8520, Japan; [email protected] (K.O.); [email protected] (K.S.); [email protected] (M.N.); [email protected] (Y.K.); [email protected] (S.M.); [email protected] (T.O.) 2 Department of Onco-biological Surgery, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima 890-8520, Japan; [email protected] 3 Department of Surgery, Jiaikai Imamura General Hospital, Kagoshima 890-0064, Japan; [email protected] 4 Department of Surgery, Gyokushoukai Kajiki Onsen Hospital, Aira 899-5241, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-99-275-5361; Fax: +81-99-265-7426 Received: 9 September 2020; Accepted: 18 October 2020; Published: 21 October 2020 Simple Summary: The “liquid biopsy” is a novel concept for detecting circulating biomarkers in the peripheral blood of patients with various cancers, including esophageal cancer. There are two main methods to identify circulating cancer related biomarkers such as morphological techniques or molecular biological techniques. -
Tumor Budding Is Associated with an Increased Risk of Lymph Node
Modern Pathology (2014) 27, 1578–1589 1578 & 2014 USCAP, Inc All rights reserved 0893-3952/14 $32.00 Tumor budding is associated with an increased risk of lymph node metastasis and poor prognosis in superficial esophageal adenocarcinoma Michael S Landau1, Steven M Hastings1, Tyler J Foxwell1, James D Luketich2, Katie S Nason2 and Jon M Davison1 1Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA and 2Department of Cardiothoracic Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA The treatment approach for superficial (stage T1) esophageal adenocarcinoma critically depends on the pre-operative assessment of metastatic risk. Part of that assessment involves evaluation of the primary tumor for pathologic characteristics known to predict nodal metastasis: depth of invasion (intramucosal vs submucosal), angiolymphatic invasion, tumor grade, and tumor size. Tumor budding is a histologic pattern that is associated with poor prognosis in early-stage colorectal adenocarcinoma and a predictor of nodal metastasis in T1 colorectal adenocarcinoma. In a retrospective study, we used a semi-quantitative histologic scoring system to categorize 210 surgically resected, superficial (stage T1) esophageal adenocarcinomas according to the extent of tumor budding (none, focal, and extensive) and also evaluated other known risk factors for nodal metastasis, including depth of invasion, angiolymphatic invasion, tumor grade, and tumor size. We assessed the risk of nodal metastasis associated with tumor budding in univariate analyses and controlled for other risk factors in a multivariate logistic regression model. In all, 41% (24 out of 59) of tumors with extensive tumor budding (tumor budding in Z3 20X microscopic fields) were metastatic to regional lymph nodes, compared with 10% (12 out of 117) of tumors with no tumor budding, and 15% (5 out of 34) of tumors with focal tumor budding (Po0.001). -
Figure S1. HAEC ROS Production and ML090 NOX5-Inhibition
Figure S1. HAEC ROS production and ML090 NOX5-inhibition. (a) Extracellular H2O2 production in HAEC treated with ML090 at different concentrations and 24 h after being infected with GFP and NOX5-β adenoviruses (MOI 100). **p< 0.01, and ****p< 0.0001 vs control NOX5-β-infected cells (ML090, 0 nM). Results expressed as mean ± SEM. Fold increase vs GFP-infected cells with 0 nM of ML090. n= 6. (b) NOX5-β overexpression and DHE oxidation in HAEC. Representative images from three experiments are shown. Intracellular superoxide anion production of HAEC 24 h after infection with GFP and NOX5-β adenoviruses at different MOIs treated or not with ML090 (10 nM). MOI: Multiplicity of infection. Figure S2. Ontology analysis of HAEC infected with NOX5-β. Ontology analysis shows that the response to unfolded protein is the most relevant. Figure S3. UPR mRNA expression in heart of infarcted transgenic mice. n= 12-13. Results expressed as mean ± SEM. Table S1: Altered gene expression due to NOX5-β expression at 12 h (bold, highlighted in yellow). N12hvsG12h N18hvsG18h N24hvsG24h GeneName GeneDescription TranscriptID logFC p-value logFC p-value logFC p-value family with sequence similarity NM_052966 1.45 1.20E-17 2.44 3.27E-19 2.96 6.24E-21 FAM129A 129. member A DnaJ (Hsp40) homolog. NM_001130182 2.19 9.83E-20 2.94 2.90E-19 3.01 1.68E-19 DNAJA4 subfamily A. member 4 phorbol-12-myristate-13-acetate- NM_021127 0.93 1.84E-12 2.41 1.32E-17 2.69 1.43E-18 PMAIP1 induced protein 1 E2F7 E2F transcription factor 7 NM_203394 0.71 8.35E-11 2.20 2.21E-17 2.48 1.84E-18 DnaJ (Hsp40) homolog.