Neuronal Junctophilins Recruit Specific Cav and Ryr Isoforms to ER-PM Junctions and Functionally Alter Cav2.1 and Cav2.2 Stefano Perni, Kurt Beam*
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Cooperativity of Imprinted Genes Inactivated by Acquired Chromosome 20Q Deletions
Cooperativity of imprinted genes inactivated by acquired chromosome 20q deletions Athar Aziz, … , Anne C. Ferguson-Smith, Anthony R. Green J Clin Invest. 2013;123(5):2169-2182. https://doi.org/10.1172/JCI66113. Research Article Oncology Large regions of recurrent genomic loss are common in cancers; however, with a few well-characterized exceptions, how they contribute to tumor pathogenesis remains largely obscure. Here we identified primate-restricted imprinting of a gene cluster on chromosome 20 in the region commonly deleted in chronic myeloid malignancies. We showed that a single heterozygous 20q deletion consistently resulted in the complete loss of expression of the imprinted genes L3MBTL1 and SGK2, indicative of a pathogenetic role for loss of the active paternally inherited locus. Concomitant loss of both L3MBTL1 and SGK2 dysregulated erythropoiesis and megakaryopoiesis, 2 lineages commonly affected in chronic myeloid malignancies, with distinct consequences in each lineage. We demonstrated that L3MBTL1 and SGK2 collaborated in the transcriptional regulation of MYC by influencing different aspects of chromatin structure. L3MBTL1 is known to regulate nucleosomal compaction, and we here showed that SGK2 inactivated BRG1, a key ATP-dependent helicase within the SWI/SNF complex that regulates nucleosomal positioning. These results demonstrate a link between an imprinted gene cluster and malignancy, reveal a new pathogenetic mechanism associated with acquired regions of genomic loss, and underline the complex molecular and cellular consequences of “simple” cancer-associated chromosome deletions. Find the latest version: https://jci.me/66113/pdf Research article Cooperativity of imprinted genes inactivated by acquired chromosome 20q deletions Athar Aziz,1,2 E. Joanna Baxter,1,2,3 Carol Edwards,4 Clara Yujing Cheong,5 Mitsuteru Ito,4 Anthony Bench,3 Rebecca Kelley,1,2 Yvonne Silber,1,2 Philip A. -
The Mineralocorticoid Receptor Leads to Increased Expression of EGFR
www.nature.com/scientificreports OPEN The mineralocorticoid receptor leads to increased expression of EGFR and T‑type calcium channels that support HL‑1 cell hypertrophy Katharina Stroedecke1,2, Sandra Meinel1,2, Fritz Markwardt1, Udo Kloeckner1, Nicole Straetz1, Katja Quarch1, Barbara Schreier1, Michael Kopf1, Michael Gekle1 & Claudia Grossmann1* The EGF receptor (EGFR) has been extensively studied in tumor biology and recently a role in cardiovascular pathophysiology was suggested. The mineralocorticoid receptor (MR) is an important efector of the renin–angiotensin–aldosterone‑system and elicits pathophysiological efects in the cardiovascular system; however, the underlying molecular mechanisms are unclear. Our aim was to investigate the importance of EGFR for MR‑mediated cardiovascular pathophysiology because MR is known to induce EGFR expression. We identifed a SNP within the EGFR promoter that modulates MR‑induced EGFR expression. In RNA‑sequencing and qPCR experiments in heart tissue of EGFR KO and WT mice, changes in EGFR abundance led to diferential expression of cardiac ion channels, especially of the T‑type calcium channel CACNA1H. Accordingly, CACNA1H expression was increased in WT mice after in vivo MR activation by aldosterone but not in respective EGFR KO mice. Aldosterone‑ and EGF‑responsiveness of CACNA1H expression was confrmed in HL‑1 cells by Western blot and by measuring peak current density of T‑type calcium channels. Aldosterone‑induced CACNA1H protein expression could be abrogated by the EGFR inhibitor AG1478. Furthermore, inhibition of T‑type calcium channels with mibefradil or ML218 reduced diameter, volume and BNP levels in HL‑1 cells. In conclusion the MR regulates EGFR and CACNA1H expression, which has an efect on HL‑1 cell diameter, and the extent of this regulation seems to depend on the SNP‑216 (G/T) genotype. -
Transcriptomic Analysis of Native Versus Cultured Human and Mouse Dorsal Root Ganglia Focused on Pharmacological Targets Short
bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets Short title: Comparative transcriptomics of acutely dissected versus cultured DRGs Andi Wangzhou1, Lisa A. McIlvried2, Candler Paige1, Paulino Barragan-Iglesias1, Carolyn A. Guzman1, Gregory Dussor1, Pradipta R. Ray1,#, Robert W. Gereau IV2, # and Theodore J. Price1, # 1The University of Texas at Dallas, School of Behavioral and Brain Sciences and Center for Advanced Pain Studies, 800 W Campbell Rd. Richardson, TX, 75080, USA 2Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine # corresponding authors [email protected], [email protected] and [email protected] Funding: NIH grants T32DA007261 (LM); NS065926 and NS102161 (TJP); NS106953 and NS042595 (RWG). The authors declare no conflicts of interest Author Contributions Conceived of the Project: PRR, RWG IV and TJP Performed Experiments: AW, LAM, CP, PB-I Supervised Experiments: GD, RWG IV, TJP Analyzed Data: AW, LAM, CP, CAG, PRR Supervised Bioinformatics Analysis: PRR Drew Figures: AW, PRR Wrote and Edited Manuscript: AW, LAM, CP, GD, PRR, RWG IV, TJP All authors approved the final version of the manuscript. 1 bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Stac Adaptor Proteins Regulate Trafficking and Function of Muscle
Stac adaptor proteins regulate trafficking and function + of muscle and neuronal L-type Ca2 channels Alexander Polster, Stefano Perni, Hicham Bichraoui, and Kurt G. Beam1 Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045 Contributed by Kurt G. Beam, December 5, 2014 (sent for review November 11, 2014; reviewed by Bruce P. Bean and Terry P. Snutch) + Excitation–contraction (EC) coupling in skeletal muscle depends precisely regulated. As for other high-voltage activated Ca2 upon trafficking of CaV1.1, the principal subunit of the dihydropyr- channels, the auxiliary β-subunit is important for membrane traf- + idine receptor (DHPR) (L-type Ca2 channel), to plasma membrane ficking (5, 6). However, it is clear that an additional factor(s) is regions at which the DHPRs interact with type 1 ryanodine recep- also crucial. Specifically, CaV1.1 expresses poorly (7) or not at all tors (RyR1) in the sarcoplasmic reticulum. A distinctive feature of in mammalian cells that are not of muscle origin (e.g., tsA201 2+ this trafficking is that CaV1.1 expresses poorly or not at all in cells), whereas the closely related cardiac/neuronal L-type Ca mammalian cells that are not of muscle origin (e.g., tsA201 cells), channel, CaV1.2, is readily expressed in such cells (8–10). The in which all of the other nine CaV isoforms have been successfully absence of RyR1 seems insufficient to account for the difficulty expressed. Here, we tested whether plasma membrane trafficking of expressing Ca 1.1 in tsA201 cells because Ca 1.1 expresses of Ca 1.1 in tsA201 cells is promoted by the adapter protein Stac3, V V V well in dyspedic myotubes, albeit producing less current per because recent work has shown that genetic deletion of Stac3 in channel (3). -
1 Inventory of Supplemental Information Presented in Relation To
Inventory of Supplemental Information presented in relation to each of the main figures in the manuscript 1. Figure S1. Related to Figure 1. 2. Figure S2. Related to Figure 2. 3. Figure S3. Related to Figure 3. 4. Figure S4. Related to Figure 4. 5. Figure S5. Related to Figure 5. 6. Figure S6. Related to Figure 6. 7. Figure S7. Related to Figure 7. 8. Table S1. Related to Figures 1 and S1. 9. Table S2. Related to Figures 3, 4, 6 and 7. 10. Table S3. Related to Figure 3. Supplemental Experimental Procedures 1. Patients and samples 2. Cell culture 3. Long term culture-initiating cells (LTC-IC) assay 4. Differentiation of CD34+ cord blood cells 5. Bi-phasic erythroid differentiation assay 6. Clonal assay 7. Mutation and sequencing analysis 8. Bisulphite sequencing and quantitative pyrosequencing 9. Human SNP genotyping 10. Strand-specific cDNA synthesis and PCR 11. Chromatin Immuno-precipitation (ChIP) 12. Immunoprecipitation and western blot 13. Colony genotyping 14. shRNA generation and viral infection 15. Retrovirus generation and transduction 16. Study approval 17. Statistical Methods 18. Primers list Supplementary References (19) 1 Additional SGK2 families 2 3 4 ♂ ♀ ♂ ♀ ♂ ♀ C/G C/C C/C C/G C/C C/G ♀ ♀ ♂ ♀ C/G C/G C/G C/G T T C T G C T A G A T T C T C C T A G A T T C T C C T A G A T T C T C C T A G A T-Cells T-Cells T-Cells T-Cells Additional GDAP1L1 familiy 2 ♂ ♀ G/G A/A ♀ G/A A C A C G G T G Erythroblasts Figure S1 - . -
Identification of Gene Expression and DNA Methylation of SERPINA5 and TIMP1 As Novel Prognostic Markers in Lower-Grade Gliomas
Identification of gene expression and DNA methylation of SERPINA5 and TIMP1 as novel prognostic markers in lower-grade gliomas Wen-Jing Zeng1,2,3,4, Yong-Long Yang5, Zhi-Peng Wen1,2, Peng Chen1,2, Xiao-Ping Chen1,2 and Zhi-Cheng Gong3,4 1 Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha, Hunan, China 2 Institute of Clinical Pharmacology, Central South University, Hunan Key Laboratory of Pharmacogenetics, Changsha, Hunan, China 3 Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, Hunan, China 4 National Clinical Research Center for Geriatric Disorders (XIANGYA), Xiangya Hospital, Central South University, Changsha, Hunan, China 5 Department of Clinical Pharmacology Research Center, Changsha Carnation Geriatrics Hospital, Changsha, Hunan, China ABSTRACT Background. Lower-grade gliomas (LGGs) is characteristic with great difference in prognosis. Due to limited prognostic biomarkers, it is urgent to identify more molecular markers to provide a more objective and accurate tumor classification system for LGGs. Methods. In the current study, we performed an integrated analysis of gene expression data and genome-wide methylation data to determine novel prognostic genes and methylation sites in LGGs. Results. To determine genes that differentially expressed between 44 short-term survivors (<2 years) and 48 long-term survivors (≥2 years), we searched LGGs TCGA RNA-seq dataset and identified 106 differentially expressed genes. SERPINA5 and Submitted 11 October 2019 Accepted 9 May 2020 TIMP1 were selected for further study. Kaplan–Meier plots showed that SERPINA5 Published 3 June 2020 and TIMP1 expression were significantly correlated with overall survival (OS) and Corresponding authors relapse-free survival (RFS) in TCGA LGGs patients. -
RYR3 Gene Polymorphisms and Cardiovascular Disease Outcomes in the Context of Antihypertensive Treatment
The Pharmacogenomics Journal (2013) 13, 330 -- 334 & 2013 Macmillan Publishers Limited All rights reserved 1470-269X/13 www.nature.com/tpj ORIGINAL ARTICLE RYR3 gene polymorphisms and cardiovascular disease outcomes in the context of antihypertensive treatment AI Lynch1, MR Irvin1, E Boerwinkle2, BR Davis3, LK Vaughan4, CE Ford3, B Aissani1, JH Eckfeldt5, DK Arnett1 and S Shrestha1 Nearly one-third of adults in the United States have hypertension, which is associated with increased cardiovascular disease (CVD) morbidity and mortality. The goal of antihypertensive pharmacogenetic research is to enhance understanding of drug response based on the interaction of individual genetic architecture and antihypertensive therapy to improve blood pressure control and ultimately prevent CVD outcomes. In the context of the Genetics of Hypertension Associated Treatment study and using a case-only design, we examined whether single-nucleotide polymorphisms in RYR3 interact with four classes of antihypertensive drugs, particularly the calcium channel blocker amlodipine versus other classes, to modify the risk of coronary heart disease (CHD; fatal CHD and non-fatal myocardial infarction combined) and heart failure (HF) in high-risk hypertensive individuals. RYR3 mediates the mobilization of stored Ca þ 2 in cardiac and skeletal muscle to initiate muscle contraction. There was suggestive evidence of pharmacogenetic effects on HF, the strongest of which was for rs877087, with the smallest P-value ¼ 0.0005 for the codominant model when comparing amlodipine versus all other treatments. There were no pharmacogenetic effects observed for CHD. The findings reported here for the case-only analysis of the antihypertensive pharmacogenetic effect of RYR3 among 3058 CHD cases and 1940 HF cases show that a hypertensive patient’s genetic profile may help predict which medication(s) might better lower CVD risk. -
Ion Channels 3 1
r r r Cell Signalling Biology Michael J. Berridge Module 3 Ion Channels 3 1 Module 3 Ion Channels Synopsis Ion channels have two main signalling functions: either they can generate second messengers or they can function as effectors by responding to such messengers. Their role in signal generation is mainly centred on the Ca2 + signalling pathway, which has a large number of Ca2+ entry channels and internal Ca2+ release channels, both of which contribute to the generation of Ca2 + signals. Ion channels are also important effectors in that they mediate the action of different intracellular signalling pathways. There are a large number of K+ channels and many of these function in different + aspects of cell signalling. The voltage-dependent K (KV) channels regulate membrane potential and + excitability. The inward rectifier K (Kir) channel family has a number of important groups of channels + + such as the G protein-gated inward rectifier K (GIRK) channels and the ATP-sensitive K (KATP) + + channels. The two-pore domain K (K2P) channels are responsible for the large background K current. Some of the actions of Ca2 + are carried out by Ca2+-sensitive K+ channels and Ca2+-sensitive Cl − channels. The latter are members of a large group of chloride channels and transporters with multiple functions. There is a large family of ATP-binding cassette (ABC) transporters some of which have a signalling role in that they extrude signalling components from the cell. One of the ABC transporters is the cystic − − fibrosis transmembrane conductance regulator (CFTR) that conducts anions (Cl and HCO3 )and contributes to the osmotic gradient for the parallel flow of water in various transporting epithelia. -
Spatial Distribution of Leading Pacemaker Sites in the Normal, Intact Rat Sinoa
Supplementary Material Supplementary Figure 1: Spatial distribution of leading pacemaker sites in the normal, intact rat sinoatrial 5 nodes (SAN) plotted along a normalized y-axis between the superior vena cava (SVC) and inferior vena 6 cava (IVC) and a scaled x-axis in millimeters (n = 8). Colors correspond to treatment condition (black: 7 baseline, blue: 100 µM Acetylcholine (ACh), red: 500 nM Isoproterenol (ISO)). 1 Supplementary Figure 2: Spatial distribution of leading pacemaker sites before and after surgical 3 separation of the rat SAN (n = 5). Top: Intact SAN preparations with leading pacemaker sites plotted during 4 baseline conditions. Bottom: Surgically cut SAN preparations with leading pacemaker sites plotted during 5 baseline conditions (black) and exposure to pharmacological stimulation (blue: 100 µM ACh, red: 500 nM 6 ISO). 2 a &DUGLDFIoQChDQQHOV .FQM FOXVWHU &DFQDG &DFQDK *MD &DFQJ .FQLS .FQG .FQK .FQM &DFQDF &DFQE .FQM í $WSD .FQD .FQM í .FQN &DVT 5\U .FQM &DFQJ &DFQDG ,WSU 6FQD &DFQDG .FQQ &DFQDJ &DFQDG .FQD .FQT 6FQD 3OQ 6FQD +FQ *MD ,WSU 6FQE +FQ *MG .FQN .FQQ .FQN .FQD .FQE .FQQ +FQ &DFQDD &DFQE &DOP .FQM .FQD .FQN .FQG .FQN &DOP 6FQD .FQD 6FQE 6FQD 6FQD ,WSU +FQ 6FQD 5\U 6FQD 6FQE 6FQD .FQQ .FQH 6FQD &DFQE 6FQE .FQM FOXVWHU V6$1 L6$1 5$ /$ 3 b &DUGLDFReFHSWRUV $GUDF FOXVWHU $GUDD &DY &KUQE &KUP &KJD 0\O 3GHG &KUQD $GUE $GUDG &KUQE 5JV í 9LS $GUDE 7SP í 5JV 7QQF 3GHE 0\K $GUE *QDL $QN $GUDD $QN $QN &KUP $GUDE $NDS $WSE 5DPS &KUP 0\O &KUQD 6UF &KUQH $GUE &KUQD FOXVWHU V6$1 L6$1 5$ /$ 4 c 1HXURQDOPURWHLQV -
Communications Between Mitochondria and Endoplasmic Reticulum in the Regulation of Metabolic Homeostasis
cells Review Communications between Mitochondria and Endoplasmic Reticulum in the Regulation of Metabolic Homeostasis Pengcheng Zhang, Daniels Konja, Yiwei Zhang and Yu Wang * The State Key Laboratory of Pharmaceutical Biotechnology, Department of Pharmacology and Pharmacy, The University of Hong Kong, Hong Kong SAR, China; [email protected] (P.Z.); [email protected] (D.K.); [email protected] (Y.Z.) * Correspondence: [email protected] Abstract: Mitochondria associated membranes (MAM), which are the contact sites between en- doplasmic reticulum (ER) and mitochondria, have emerged as an important hub for signaling molecules to integrate the cellular and organelle homeostasis, thus facilitating the adaptation of energy metabolism to nutrient status. This review explores the dynamic structural and functional features of the MAM and summarizes the various abnormalities leading to the impaired insulin sensitivity and metabolic diseases. Keywords: mitochondria; endoplasmic reticulum; MAM; energy metabolism 1. Introduction Citation: Zhang, P.; Konja, D.; Zhang, In mammalian cells, the mitochondrion is the organelle specialized for energy produc- Y.; Wang, Y. Communications tion through the processes of oxidative phosphorylation, tricarboxylic acid (TCA) cycle between Mitochondria and and fatty acid β-oxidation [1]. Approximately 90% of cellular reactive oxygen species Endoplasmic Reticulum in the (ROS) are produced from mitochondria during the reactions of oxidative phosphorylation Regulation of Metabolic Homeostasis. (OXPHOS) -
Genomic Analyses Implicate Noncoding De Novo Variants in Congenital Heart Disease
Lawrence Berkeley National Laboratory Recent Work Title Genomic analyses implicate noncoding de novo variants in congenital heart disease. Permalink https://escholarship.org/uc/item/1ps986vj Journal Nature genetics, 52(8) ISSN 1061-4036 Authors Richter, Felix Morton, Sarah U Kim, Seong Won et al. Publication Date 2020-08-01 DOI 10.1038/s41588-020-0652-z Peer reviewed eScholarship.org Powered by the California Digital Library University of California HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Genet Manuscript Author . Author manuscript; Manuscript Author available in PMC 2020 December 29. Published in final edited form as: Nat Genet. 2020 August ; 52(8): 769–777. doi:10.1038/s41588-020-0652-z. Genomic analyses implicate noncoding de novo variants in congenital heart disease Felix Richter1,31, Sarah U. Morton2,3,31, Seong Won Kim4,31, Alexander Kitaygorodsky5,31, Lauren K. Wasson4,31, Kathleen M. Chen6,31, Jian Zhou6,7,8, Hongjian Qi5, Nihir Patel9, Steven R. DePalma4, Michael Parfenov4, Jason Homsy4,10, Joshua M. Gorham4, Kathryn B. Manheimer11, Matthew Velinder12, Andrew Farrell12, Gabor Marth12, Eric E. Schadt9,11,13, Jonathan R. Kaltman14, Jane W. Newburger15, Alessandro Giardini16, Elizabeth Goldmuntz17,18, Martina Brueckner19, Richard Kim20, George A. Porter Jr.21, Daniel Bernstein22, Wendy K. Chung23, Deepak Srivastava24,32, Martin Tristani-Firouzi25,32, Olga G. Troyanskaya6,7,26,32, Diane E. Dickel27,32, Yufeng Shen5,32, Jonathan G. Seidman4,32, Christine E. Seidman4,28,32, Bruce D. Gelb9,29,30,32,* 1Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA. 2Department of Pediatrics, Harvard Medical School, Boston, MA, USA. -
T-Tubule Biogenesis and Triad Formation in Skeletal Muscle and Implication in Human Diseases
T-tubule biogenesis and triad formation in skeletal muscle and implication in human diseases. Lama Al-Qusairi, Jocelyn Laporte To cite this version: Lama Al-Qusairi, Jocelyn Laporte. T-tubule biogenesis and triad formation in skeletal muscle and implication in human diseases.. Skeletal Muscle, BioMed Central, 2011, 1 (1), pp.26. 10.1186/2044- 5040-1-26. inserm-00614419 HAL Id: inserm-00614419 https://www.hal.inserm.fr/inserm-00614419 Submitted on 11 Aug 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Al-Qusairi and Laporte Skeletal Muscle 2011, 1:26 http://www.skeletalmusclejournal.com/content/1/1/26 Skeletal Muscle REVIEW Open Access T-tubule biogenesis and triad formation in skeletal muscle and implication in human diseases Lama Al-Qusairi1,2,3,4,5,6 and Jocelyn Laporte1,2,3,4,5* Abstract In skeletal muscle, the excitation-contraction (EC) coupling machinery mediates the translation of the action potential transmitted by the nerve into intracellular calcium release and muscle contraction. EC coupling requires a highly specialized membranous structure, the triad, composed of a central T-tubule surrounded by two terminal cisternae from the sarcoplasmic reticulum.