Impossibility Results for Grammar-Compressed Linear Algebra
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Schematic Entry
Schematic Entry Copyrights Software, documentation and related materials: Copyright © 2002 Altium Limited This software product is copyrighted and all rights are reserved. The distribution and sale of this product are intended for the use of the original purchaser only per the terms of the License Agreement. This document may not, in whole or part, be copied, photocopied, reproduced, translated, reduced or transferred to any electronic medium or machine-readable form without prior consent in writing from Altium Limited. U.S. Government use, duplication or disclosure is subject to RESTRICTED RIGHTS under applicable government regulations pertaining to trade secret, commercial computer software developed at private expense, including FAR 227-14 subparagraph (g)(3)(i), Alternative III and DFAR 252.227-7013 subparagraph (c)(1)(ii). P-CAD is a registered trademark and P-CAD Schematic, P-CAD Relay, P-CAD PCB, P-CAD ProRoute, P-CAD QuickRoute, P-CAD InterRoute, P-CAD InterRoute Gold, P-CAD Library Manager, P-CAD Library Executive, P-CAD Document Toolbox, P-CAD InterPlace, P-CAD Parametric Constraint Solver, P-CAD Signal Integrity, P-CAD Shape-Based Autorouter, P-CAD DesignFlow, P-CAD ViewCenter, Master Designer and Associate Designer are trademarks of Altium Limited. Other brand names are trademarks of their respective companies. Altium Limited www.altium.com Table of Contents chapter 1 Introducing P-CAD Schematic P-CAD Schematic Features ................................................................................................1 About -
Genetic Databases
Stefano Lonardi March, 2000 Compression of Biological Sequences by Greedy Off-line Textual Substitution Alberto Apostolico Stefano Lonardi Purdue University Università di Padova Genetic Databases § Massive § Growing exponentially Example: GenBank contains approximately 4,654,000,000 bases in 5,355,000 sequence records as of December 1999 Data Compression Conference 2000 1 Stefano Lonardi March, 2000 DNA Sequence Records Composed by annotations (in English) and DNA bases (on the alphabet {A,C,G,T,U,M,R,W,S,Y,K,V,H,D,B,X,N}) >RTS2 RTS2 upstream sequence, from -200 to -1 TCTGTTATAGTACATATTATAGTACACCAATGTAAATCTGGTCCGGGTTACACAACACTT TGTCCTGTACTTTGAAAACTGGAAAAACTCCGCTAGTTGAAATTAATATCAAATGGAAAA GTCAGTATCATCATTCTTTTCTTGACAAGTCCTAAAAAGAGCGAAAACACAGGGTTGTTT GATTGTAGAAAATCACAGCG >MEK1 MEK1 upstream sequence, from -200 to -1 TTCCAATCATAAAGCATACCGTGGTYATTTAGCCGGGGAAAAGAAGAATGATGGCGGCTA AATTTCGGCGGCTATTTCATTCATTCAAGTATAAAAGGGAGAGGTTTGACTAATTTTTTA CTTGAGCTCCTTCTGGAGTGCTCTTGTACGTTTCAAATTTTATTAAGGACCAAATATACA ACAGAAAGAAGAAGAGCGGA >NDJ1 NDJ1 upstream sequence, from -200 to -1 ATAAAATCACTAAGACTAGCAACCACGTTTTGTTTTGTAGTTGAGAGTAATAGTTACAAA TGGAAGATATATATCCGTTTCGTACTCAGTGACGTACCGGGCGTAGAAGTTGGGCGGCTA TTTGACAGATATATCAAAAATATTGTCATGAACTATACCATATACAACTTAGGATAAAA ATACAGGTAGAAAAACTATA Problem Textual compression of DNA data is difficult, i.e., “standard” methods do not seem to exploit the redundancies (if any) inherent to DNA sequences cfr. C.Nevill-Manning, I.H.Witten, “Protein is incompressible”, DCC99 Data Compression Conference 2000 2 Stefano Lonardi March, 2000 -
ARC-LEAP User Instructions for The
ARC-LEAP User Instructions Appalachian Regional Commission Local Economic Assessment Package prepared for the Appalachian Regional Commission prepared by Economic Development Research Group, Inc. Glen Weisbrod Teresa Lynch Margaret Collins January, 2004 ARC-LEAP User Instructions Appalachian Regional Commission Local Economic Assessment Package prepared for the Appalachian Regional Commission prepared by Economic Development Research Group, Inc. 2 Oliver Street, 9th Floor, Boston, MA 02109 Telephone 617.338.6775 Fax 617.338.1174 e-mail [email protected] Website www.edrgroup.com January, 2004 ARC-LEAP User Instructions PREFACE LEAP is a software tool that was designed and developed by Economic Development Research Group, Inc. (www.edrgroup.com) to assist practitioners in evaluating local economic development needs and opportunities. ARC-LEAP is a version of this tool developed specifically for the Appalachian Regional Commission (ARC) and it’s Local Development Districts (LDDs). Development of this user guide was funded by ARC as a companion to the ARC-LEAP analysis system. This document presents user instructions and technical documentation for ARC-LEAP. It is organized into three parts: I. overview of the ARC-LEAP tool II. instructions for users to obtain input information and run the analysis model III. interpretation of output tables . A separate Handbook document provides more detailed discussion of the economic development assessment process, including analysis of local economic performance, diagnosis of local strengths and weaknesses, and application of business opportunity information for developing an economic development strategy. Economic Development Research Group i ARC-LEAP User Instructions I. OVERVIEW The ARC-LEAP model serves to three related purposes, each aimed at helping practitioners identify target industries for economic development. -
FOCS 2005 Program SUNDAY October 23, 2005
FOCS 2005 Program SUNDAY October 23, 2005 Talks in Grand Ballroom, 17th floor Session 1: 8:50am – 10:10am Chair: Eva´ Tardos 8:50 Agnostically Learning Halfspaces Adam Kalai, Adam Klivans, Yishay Mansour and Rocco Servedio 9:10 Noise stability of functions with low influences: invari- ance and optimality The 46th Annual IEEE Symposium on Elchanan Mossel, Ryan O’Donnell and Krzysztof Foundations of Computer Science Oleszkiewicz October 22-25, 2005 Omni William Penn Hotel, 9:30 Every decision tree has an influential variable Pittsburgh, PA Ryan O’Donnell, Michael Saks, Oded Schramm and Rocco Servedio Sponsored by the IEEE Computer Society Technical Committee on Mathematical Foundations of Computing 9:50 Lower Bounds for the Noisy Broadcast Problem In cooperation with ACM SIGACT Navin Goyal, Guy Kindler and Michael Saks Break 10:10am – 10:30am FOCS ’05 gratefully acknowledges financial support from Microsoft Research, Yahoo! Research, and the CMU Aladdin center Session 2: 10:30am – 12:10pm Chair: Satish Rao SATURDAY October 22, 2005 10:30 The Unique Games Conjecture, Integrality Gap for Cut Problems and Embeddability of Negative Type Metrics Tutorials held at CMU University Center into `1 [Best paper award] Reception at Omni William Penn Hotel, Monongahela Room, Subhash Khot and Nisheeth Vishnoi 17th floor 10:50 The Closest Substring problem with small distances Tutorial 1: 1:30pm – 3:30pm Daniel Marx (McConomy Auditorium) Chair: Irit Dinur 11:10 Fitting tree metrics: Hierarchical clustering and Phy- logeny Subhash Khot Nir Ailon and Moses Charikar On the Unique Games Conjecture 11:30 Metric Embeddings with Relaxed Guarantees Break 3:30pm – 4:00pm Ittai Abraham, Yair Bartal, T-H. -
Lossless Compression of Internal Files in Parallel Reservoir Simulation
Lossless Compression of Internal Files in Parallel Reservoir Simulation Suha Kayum Marcin Rogowski Florian Mannuss 9/26/2019 Outline • I/O Challenges in Reservoir Simulation • Evaluation of Compression Algorithms on Reservoir Simulation Data • Real-world application - Constraints - Algorithm - Results • Conclusions 2 Challenge Reservoir simulation 1 3 Reservoir Simulation • Largest field in the world are represented as 50 million – 1 billion grid block models • Each runs takes hours on 500-5000 cores • Calibrating the model requires 100s of runs and sophisticated methods • “History matched” model is only a beginning 4 Files in Reservoir Simulation • Internal Files • Input / Output Files - Interact with pre- & post-processing tools Date Restart/Checkpoint Files 5 Reservoir Simulation in Saudi Aramco • 100’000+ simulations annually • The largest simulation of 10 billion cells • Currently multiple machines in TOP500 • Petabytes of storage required 600x • Resources are Finite • File Compression is one solution 50x 6 Compression algorithm evaluation 2 7 Compression ratio Tested a number of algorithms on a GRID restart file for two models 4 - Model A – 77.3 million active grid blocks 3.5 - Model K – 8.7 million active grid blocks 3 - 15.6 GB and 7.2 GB respectively 2.5 2 Compression ratio is between 1.5 1 compression ratio compression - From 2.27 for snappy (Model A) 0.5 0 - Up to 3.5 for bzip2 -9 (Model K) Model A Model K lz4 snappy gzip -1 gzip -9 bzip2 -1 bzip2 -9 8 Compression speed • LZ4 and Snappy significantly outperformed other algorithms -
Hierarchical Clustering with Global Objectives: Approximation Algorithms and Hardness Results
HIERARCHICAL CLUSTERING WITH GLOBAL OBJECTIVES: APPROXIMATION ALGORITHMS AND HARDNESS RESULTS ADISSERTATION SUBMITTED TO THE DEPARTMENT OF COMPUTER SCIENCE AND THE COMMITTEE ON GRADUATE STUDIES OF STANFORD UNIVERSITY IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Evangelos Chatziafratis June 2020 © 2020 by Evangelos Chatziafratis. All Rights Reserved. Re-distributed by Stanford University under license with the author. This work is licensed under a Creative Commons Attribution- Noncommercial 3.0 United States License. http://creativecommons.org/licenses/by-nc/3.0/us/ This dissertation is online at: http://purl.stanford.edu/bb164pj1759 ii I certify that I have read this dissertation and that, in my opinion, it is fully adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy. Tim Roughgarden, Primary Adviser I certify that I have read this dissertation and that, in my opinion, it is fully adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy. Moses Charikar, Co-Adviser I certify that I have read this dissertation and that, in my opinion, it is fully adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy. Li-Yang Tan I certify that I have read this dissertation and that, in my opinion, it is fully adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy. Gregory Valiant Approved for the Stanford University Committee on Graduate Studies. Stacey F. Bent, Vice Provost for Graduate Education This signature page was generated electronically upon submission of this dissertation in electronic format. -
Sequence Alignment/Map Format Specification
Sequence Alignment/Map Format Specification The SAM/BAM Format Specification Working Group 3 Jun 2021 The master version of this document can be found at https://github.com/samtools/hts-specs. This printing is version 53752fa from that repository, last modified on the date shown above. 1 The SAM Format Specification SAM stands for Sequence Alignment/Map format. It is a TAB-delimited text format consisting of a header section, which is optional, and an alignment section. If present, the header must be prior to the alignments. Header lines start with `@', while alignment lines do not. Each alignment line has 11 mandatory fields for essential alignment information such as mapping position, and variable number of optional fields for flexible or aligner specific information. This specification is for version 1.6 of the SAM and BAM formats. Each SAM and BAMfilemay optionally specify the version being used via the @HD VN tag. For full version history see Appendix B. Unless explicitly specified elsewhere, all fields are encoded using 7-bit US-ASCII 1 in using the POSIX / C locale. Regular expressions listed use the POSIX / IEEE Std 1003.1 extended syntax. 1.1 An example Suppose we have the following alignment with bases in lowercase clipped from the alignment. Read r001/1 and r001/2 constitute a read pair; r003 is a chimeric read; r004 represents a split alignment. Coor 12345678901234 5678901234567890123456789012345 ref AGCATGTTAGATAA**GATAGCTGTGCTAGTAGGCAGTCAGCGCCAT +r001/1 TTAGATAAAGGATA*CTG +r002 aaaAGATAA*GGATA +r003 gcctaAGCTAA +r004 ATAGCT..............TCAGC -r003 ttagctTAGGC -r001/2 CAGCGGCAT The corresponding SAM format is:2 1Charset ANSI X3.4-1968 as defined in RFC1345. -
Arrow: Integration to 'Apache' 'Arrow'
Package ‘arrow’ September 5, 2021 Title Integration to 'Apache' 'Arrow' Version 5.0.0.2 Description 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. This package provides an interface to the 'Arrow C++' library. Depends R (>= 3.3) License Apache License (>= 2.0) URL https://github.com/apache/arrow/, https://arrow.apache.org/docs/r/ BugReports https://issues.apache.org/jira/projects/ARROW/issues Encoding UTF-8 Language en-US SystemRequirements C++11; for AWS S3 support on Linux, libcurl and openssl (optional) Biarch true Imports assertthat, bit64 (>= 0.9-7), methods, purrr, R6, rlang, stats, tidyselect, utils, vctrs RoxygenNote 7.1.1.9001 VignetteBuilder knitr Suggests decor, distro, dplyr, hms, knitr, lubridate, pkgload, reticulate, rmarkdown, stringi, stringr, testthat, tibble, withr Collate 'arrowExports.R' 'enums.R' 'arrow-package.R' 'type.R' 'array-data.R' 'arrow-datum.R' 'array.R' 'arrow-tabular.R' 'buffer.R' 'chunked-array.R' 'io.R' 'compression.R' 'scalar.R' 'compute.R' 'config.R' 'csv.R' 'dataset.R' 'dataset-factory.R' 'dataset-format.R' 'dataset-partition.R' 'dataset-scan.R' 'dataset-write.R' 'deprecated.R' 'dictionary.R' 'dplyr-arrange.R' 'dplyr-collect.R' 'dplyr-eval.R' 'dplyr-filter.R' 'expression.R' 'dplyr-functions.R' 1 2 R topics documented: 'dplyr-group-by.R' 'dplyr-mutate.R' 'dplyr-select.R' 'dplyr-summarize.R' -
Official Service Contractor for The2018 International Bluegrass Music Association
International Bluegrass Musical Association OFFICIAL SERVICE September 26 - 29, 2018 CONTRACTOR Raleigh Convention Center Hall C Raleigh, NC Information and Order Forms Table of Contents General Information General Information................................................................2, 3 Payment Policy & Credit Card Authorization.........................4 Third Party Billing & Credit Card Charge Authorization..5,6 Color Chart for Drape, Table Skirts and Carpet...................7 Decorating Services Custom Booth Packages...........................................................8 Furnishing Rentals.......................................................................9 Mailing Address: Custom Signs and Graphics...................................................10 P. O. Box 49837 Greensboro, NC 27419 Labor Cleaning Service.........................................................................11 Street Address: Installation and Dismantle Labor............................................12 121 North Chimney Rock Road Exhibitor Appointed Contractor.........................................13,14 Greensboro, NC 27409 Material Handling Phone: (336) 315-5225 Material Handling General Information............................15,16 Fax: (336) 315-5220 Material Handling Rate Schedule and Order Form.......17,18 Shipping Labels........................................................................19 2 General 2 Information HOLLINS Exposition Services is pleased to have been selected as the Official Service Contractor for the2018 International -
Galileo Formats
Galileo Formats October 1998 edition Chapters INDEX Introduction Booking File Air Transportation Fares Cars Hotels LeisureShopper Document Production Queues Client File/TravelScreen Travel Information Miscellaneous SECURITY Sign On H/SON SON/Z217 or Sign on at own office SON/ followed by Z and a 1 to 3 character I.D.; the I.D. can be SON/ZHA initials, a number or a combination of both SON/ZGL4HA Sign on at branch agency SON/ followed by Z, own pseudo city code and a 1 to 3 character I.D. SON/Z7XX1/UMP Sign on at 4 character PCC branch agency SON/ followed by Z, own pseudo city code, second delimiter and 1 to 3 character I.D. SB Change to work area B SA/TA Change to work area A; different duty code TA (Training) SAI/ZHA Sign back into all work areas at own office SAI/ZGL4HA Sign back into all work areas at branch agency; SAI/ followed by Z, own pseudo city code and a 1 to 3 character I.D. Sign Off SAO Temporary sign out; incomplete Booking Files must be ignored or completed SOF Sign off; incomplete Booking Files must be ignored or completed SOF/ZHA Sign off override (at own office); incomplete transactions are not protected SOF/ZGL4HA Sign off override (at branch agency); incomplete transactions are not protected; SOF/ followed by Z, own pseudo city code and a 1 to 3 character I.D. SECURITY Security Profile STD/ZHA Display security profile, for sign on HA; once displayed, password may be changed SDA List security profiles created by user (second level authoriser and above) SDA/ZXXØ List security profiles associated with agency XXØ (second level authoriser and above) STD/ZXX1UMP or Display profile STD/ followed by Z, own pseudo city code, second delimiter if pseudo STD/Z7XX1/UMP city code is 4 characters and 1 to 3 character I.D. -
Summer 2010 PPAXAXCENTURIONCENTURION Boston Police Patrolmen’S Association, Inc
Boston Police Patrolmen’s Association, Inc. PRST. STD. 9-11 Shetland Street U.S. POSTAGE Flagwoman in Boston, Massachusetts 02119 PAID PERMIT NO. 2226 South Boston at WORCESTER, MA $53.00 per hour! Where’s the Globe photographer? See the back and forth with the Globe’s Scot Lehigh. See pages A10 & A11 Nation’s First Police Department • Established 1854 Volume 40, Number 3 • Summer 2010 PPAXAXCENTURIONCENTURION Boston Police Patrolmen’s Association, Inc. Boston Emergency Medical Technicians NATIONAL ASSOCIATION OF POLICE ORGANIZATIONS A DISGRACE!!! Police Picket Patrick City gives Woodman family, Thousands attend two-day picket, attorney Gov. Patrick jeered, AZ Gov. Brewer cheered By Jim Carnell, Pax Editor $3 million housands of Massachusetts municipal settlement Tpolice officers showed up to demon- strate at the National Governor’s Associa- By Jim Carnell, Pax Editor tion meeting held recently in Boston, hosted n yet another discouraging, insulting by our own little Lord Fauntleroy, Gover- slap at working police officers, the city I nor Deval Patrick. recently gave the family of David On Friday, July 9th, about three thousand Woodman and cop-hating Attorney officers appeared outside of Fenway Park Howard Friedman $3 million dollars, to greet the Governors and their staffs at an despite the fact that a formal lawsuit had event featuring our diminutive Governor. not even been filed. Governor Patrick has focused his (and his Woodman died at the Beth Israel allies in the bought-and-sold local media) Hospital eleven days after his initial en- attention upon police officers in particular, counter with police following the Celtics’ attacking police officer’s pay, benefits and 2008 victory. -
Parquet Data Format Performance
Parquet data format performance Jim Pivarski Princeton University { DIANA-HEP February 21, 2018 1 / 22 What is Parquet? 1974 HBOOK tabular rowwise FORTRAN first ntuples in HEP 1983 ZEBRA hierarchical rowwise FORTRAN event records in HEP 1989 PAW CWN tabular columnar FORTRAN faster ntuples in HEP 1995 ROOT hierarchical columnar C++ object persistence in HEP 2001 ProtoBuf hierarchical rowwise many Google's RPC protocol 2002 MonetDB tabular columnar database “first” columnar database 2005 C-Store tabular columnar database also early, became HP's Vertica 2007 Thrift hierarchical rowwise many Facebook's RPC protocol 2009 Avro hierarchical rowwise many Hadoop's object permanance and interchange format 2010 Dremel hierarchical columnar C++, Java Google's nested-object database (closed source), became BigQuery 2013 Parquet hierarchical columnar many open source object persistence, based on Google's Dremel paper 2016 Arrow hierarchical columnar many shared-memory object exchange 2 / 22 What is Parquet? 1974 HBOOK tabular rowwise FORTRAN first ntuples in HEP 1983 ZEBRA hierarchical rowwise FORTRAN event records in HEP 1989 PAW CWN tabular columnar FORTRAN faster ntuples in HEP 1995 ROOT hierarchical columnar C++ object persistence in HEP 2001 ProtoBuf hierarchical rowwise many Google's RPC protocol 2002 MonetDB tabular columnar database “first” columnar database 2005 C-Store tabular columnar database also early, became HP's Vertica 2007 Thrift hierarchical rowwise many Facebook's RPC protocol 2009 Avro hierarchical rowwise many Hadoop's object permanance and interchange format 2010 Dremel hierarchical columnar C++, Java Google's nested-object database (closed source), became BigQuery 2013 Parquet hierarchical columnar many open source object persistence, based on Google's Dremel paper 2016 Arrow hierarchical columnar many shared-memory object exchange 2 / 22 Developed independently to do the same thing Google Dremel authors claimed to be unaware of any precedents, so this is an example of convergent evolution.