Survivor of the Cretaceous Mass Extinction
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Evolution of the Patellar Sesamoid Bone in Mammals
A peer-reviewed version of this preprint was published in PeerJ on 21 March 2017. View the peer-reviewed version (peerj.com/articles/3103), which is the preferred citable publication unless you specifically need to cite this preprint. Samuels ME, Regnault S, Hutchinson JR. 2017. Evolution of the patellar sesamoid bone in mammals. PeerJ 5:e3103 https://doi.org/10.7717/peerj.3103 Evolution of the patellar sesamoid bone in mammals Mark E Samuels 1, 2 , Sophie Regnault 3 , John R Hutchinson Corresp. 3 1 Department of Medicine, University of Montreal, Montreal, Quebec, Canada 2 Centre de Recherche du CHU Ste-Justine, Montreal, Quebec, Canada 3 Structure & Motion Laboratory, Department of Comparative Biomedical Sciences, The Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom Corresponding Author: John R Hutchinson Email address: [email protected] The patella is a sesamoid bone located in the major extensor tendon of the knee joint, in the hindlimb of many tetrapods. Although numerous aspects of knee morphology are ancient and conserved among most tetrapods, the evolutionary occurrence of an ossified patella is highly variable. Among extant (crown clade) groups it is found in most birds, most lizards, the monotreme mammals and almost all placental mammals, but it is absent in most marsupial mammals as well as many reptiles. Here we integrate data from the literature and first-hand studies of fossil and recent skeletal remains to reconstruct the evolution of the mammalian patella. We infer that bony patellae most likely evolved between four to six times in crown group Mammalia: in monotremes, in the extinct multituberculates, in one or more stem-mammal genera outside of therian or eutherian mammals, and up to three times in therian mammals. -
The World at the Time of Messel: Conference Volume
T. Lehmann & S.F.K. Schaal (eds) The World at the Time of Messel - Conference Volume Time at the The World The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment and the History of Early Primates 22nd International Senckenberg Conference 2011 Frankfurt am Main, 15th - 19th November 2011 ISBN 978-3-929907-86-5 Conference Volume SENCKENBERG Gesellschaft für Naturforschung THOMAS LEHMANN & STEPHAN F.K. SCHAAL (eds) The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference Frankfurt am Main, 15th – 19th November 2011 Conference Volume Senckenberg Gesellschaft für Naturforschung IMPRINT The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference 15th – 19th November 2011, Frankfurt am Main, Germany Conference Volume Publisher PROF. DR. DR. H.C. VOLKER MOSBRUGGER Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25, 60325 Frankfurt am Main, Germany Editors DR. THOMAS LEHMANN & DR. STEPHAN F.K. SCHAAL Senckenberg Research Institute and Natural History Museum Frankfurt Senckenberganlage 25, 60325 Frankfurt am Main, Germany [email protected]; [email protected] Language editors JOSEPH E.B. HOGAN & DR. KRISTER T. SMITH Layout JULIANE EBERHARDT & ANIKA VOGEL Cover Illustration EVELINE JUNQUEIRA Print Rhein-Main-Geschäftsdrucke, Hofheim-Wallau, Germany Citation LEHMANN, T. & SCHAAL, S.F.K. (eds) (2011). The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates. 22nd International Senckenberg Conference. 15th – 19th November 2011, Frankfurt am Main. Conference Volume. Senckenberg Gesellschaft für Naturforschung, Frankfurt am Main. pp. 203. -
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology
JOURNAL OF MORPHOLOGY 277:1469–1485 (2016) A Three-Dimensional Morphometric Analysis of Upper Forelimb Morphology in the Enigmatic Tapir (Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology Jamie A. MacLaren1* and Sandra Nauwelaerts1,2 1Department of Biology, Universiteit Antwerpen, Building D, Campus Drie Eiken, Universiteitsplein, Wilrijk, Antwerp 2610, Belgium 2Centre for Research and Conservation, Koninklijke Maatschappij Voor Dierkunde (KMDA), Koningin Astridplein 26, Antwerp 2018, Belgium ABSTRACT Forelimb morphology is an indicator for order Perissodactyla (odd-toed ungulates). Modern terrestrial locomotor ecology. The limb morphology of the tapirs are widely accepted to belong to a single enigmatic tapir (Perissodactyla: Tapirus) has often been genus (Tapirus), containing four extant species compared to that of basal perissodactyls, despite the lack (Hulbert, 1973; Ruiz-Garcıa et al., 1985) and sev- of quantitative studies comparing forelimb variation in eral regional subspecies (Padilla and Dowler, 1965; modern tapirs. Here, we present a quantitative assess- ment of tapir upper forelimb osteology using three- Wilson and Reeder, 2005): the Baird’s tapir (T. dimensional geometric morphometrics to test whether bairdii), lowland tapir (T. terrestris), mountain the four modern tapir species are monomorphic in their tapir (T. pinchaque), and the Malayan tapir (T. forelimb skeleton. The shape of the upper forelimb bones indicus). Extant tapirs primarily inhabit tropical across four species (T. indicus; T. bairdii; T. terrestris; T. rainforest, with some populations also occupying pinchaque) was investigated. Bones were laser scanned wet grassland and chaparral biomes (Padilla and to capture surface morphology and 3D landmark analysis Dowler, 1965; Padilla et al., 1996). was used to quantify shape. -
A Species-Level Phylogenetic Supertree of Marsupials
J. Zool., Lond. (2004) 264, 11–31 C 2004 The Zoological Society of London Printed in the United Kingdom DOI:10.1017/S0952836904005539 A species-level phylogenetic supertree of marsupials Marcel Cardillo1,2*, Olaf R. P. Bininda-Emonds3, Elizabeth Boakes1,2 and Andy Purvis1 1 Department of Biological Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, U.K. 2 Institute of Zoology, Zoological Society of London, Regent’s Park, London NW1 4RY, U.K. 3 Lehrstuhl fur¨ Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany (Accepted 26 January 2004) Abstract Comparative studies require information on phylogenetic relationships, but complete species-level phylogenetic trees of large clades are difficult to produce. One solution is to combine algorithmically many small trees into a single, larger supertree. Here we present a virtually complete, species-level phylogeny of the marsupials (Mammalia: Metatheria), built by combining 158 phylogenetic estimates published since 1980, using matrix representation with parsimony. The supertree is well resolved overall (73.7%), although resolution varies across the tree, indicating variation both in the amount of phylogenetic information available for different taxa, and the degree of conflict among phylogenetic estimates. In particular, the supertree shows poor resolution within the American marsupial taxa, reflecting a relative lack of systematic effort compared to the Australasian taxa. There are also important differences in supertrees based on source phylogenies published before 1995 and those published more recently. The supertree can be viewed as a meta-analysis of marsupial phylogenetic studies, and should be useful as a framework for phylogenetically explicit comparative studies of marsupial evolution and ecology. -
Aptian–Albian) of Texas and Oklahoma
Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma BRIAN M. DAVIS and RICHARD L. CIFELLI Davis, B.M. and Cifelli, R.L. 2011. Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma. Acta Palaeontologica Polonica 56 (3): 441–462. The Trinity therians have long been the focus of attempts to reconstruct the evolutionary history of higher mammals, es− pecially in the context of the development of tribospheny. In this paper, we update the taxonomy of the tribosphenidan taxa known from the Trinity Group and establish with more confidence the premolar/molar count in each. Many isolated specimens can be referred to a specific tooth locus. Additional diversity is revealed within the Deltatheroida, with the de− scription of an additional species of Oklatheridium; Pappotherium is here considered a likely metatherian based on the in− ferred presence of four molars, while Holoclemensia is a basal eutherian (the opposite of some traditional interpretations). The remainder of the genera, Kermackia and Slaughteria, cannot be allied with either of the living groups of tribo− sphenidan mammals using the available data. We identify strong morphological diversity within this assemblage of stem taxa, including modifications to the traditional tribosphenic occlusal pattern in Kermackia. Mammalian evolution at the base of the tribosphenidan radiation was complex, and this underscores the need for caution when interpreting the mor− phology and relationships of taxa known by incomplete material. Key words: Tribosphenida, Metatheria, Eutheria, Deltatheroida, Trinity Group, Early Cretaceous. Brian M. Davis [[email protected]] and Richard L. Cifelli [[email protected]], Department of Zoology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, 2401 Chautauqua Ave, Norman, OK, 73072, USA. -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
0 Introduction
Cambridge University Press 978-0-521-78117-6 - Evolution of Tertiary Mammals of North America, Volume 2: Small Mammals, Xenarthrans, and Marine Mammals Christine M. Janis, Gregg F. Gunnell and Mark D. Uhen Excerpt More information 0 Introduction christine m. janis,1 gregg f. gunnell2 and mark d. uhen3 1Brown University, Providence, RI, USA 2Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA 3Smithsonian Institution, Washington, DC, USA AIMS OF VOLUME 2 the chapter are presented according to a standardized format, and the institutional abbreviations have also been standardized and are This enterprise was originally conceived of as a single volume. How- listed in an appendix (Appendix III). ever, after a span of 10 years from its original conception, the current senior editor (Christine Janis), and the then junior editors (Kathleen Scott and Louis Jacobs) realized that it would be more realistic THE STANDARDIZED LAYOUT OF EACH CHAPTER to proceed with chapters then in hand, which could more or less be assembled into the conceptually useful, if taxonomically para- The chapters are laid out in a similar fashion to those in Volume 1. phyletic, rubric of “Terrestrial Carnivores and Ungulates” (Janis, The contributors were requested to adhere to a common layout for Scott, and Jacobs, 1998). This in part reflected the chapters that had each chapter, in order to provide uniform information throughout been assembled to date, although it should be noted that some of the book. The “Introduction” for each chapter introduces the group. the chapters in this current volume, most notably those by Darryl The “Defining features” section lays out the basic cranial, dental, Domning on sirenians and desmostylians, were among the first ones and postcranial features of the taxon. -
The Fauna from the Tyrannosaurus Rex Excavation, Frenchman Formation (Late Maastrichtian), Saskatchewan
The Fauna from the Tyrannosaurus rex Excavation, Frenchman Formation (Late Maastrichtian), Saskatchewan Tim T. Tokaryk 1 and Harold N. Bryant 2 Tokaryk, T.T. and Bryant, H.N. (2004): The fauna from the Tyrannosaurus rex excavation, Frenchman Formation (Late Maastrichtian), Saskatchewan; in Summary of Investigations 2004, Volume 1, Saskatchewan Geological Survey, Sask. Industry Resources, Misc. Rep. 2004-4.1, CD-ROM, Paper A-18, 12p. Abstract The quarry that contained the partial skeleton of the Tyrannosaurus rex, familiarly known as “Scotty,” has yielded a diverse faunal and floral assemblage. The site is located in the Frenchman River valley in southwestern Saskatchewan and dates from approximately 65 million years, at the end of the Cretaceous Period. The faunal assemblage from the quarry is reviewed and the floral assemblage is summarized. Together, these assemblages provide some insight into the biological community that lived in southwestern Saskatchewan during the latest Cretaceous. Keywords: Frenchman Formation, Maastrichtian, Late Cretaceous, southwestern Saskatchewan, Tyrannosaurus rex. 1. Introduction a) Geological Setting The Frenchman Formation, of latest Maastrichtian age, is extensively exposed in southwestern Saskatchewan (Figure 1; Fraser et al., 1935; Furnival, 1950). The lithostratigraphic units in the formation consist largely of fluvial sandstones and greenish grey to green claystones. Outcrops of the Frenchman Formation are widely distributed in the Frenchman River valley, southeast of Eastend. Chambery Coulee, on the north side of the valley, includes Royal Saskatchewan Museum (RSM) locality 72F07-0022 (precise locality data on file with the RSM), the site that contained the disarticulated skeleton of a Tyrannosaurus rex. McIver (2002) subdivided the stratigraphic sequence at this locality into “lower” and “upper” beds. -
SEDIMENTATION of the BARUN GOYOT FORMATION (Plates XXXIV-XLII )
RYSZARD GRADZINSKI & TOMASZ JERZYKIEWICZ SEDIMENTATION OF THE BARUN GOYOT FORMATION (Plates XXXIV-XLII ) Contents C ontents Pa ge Introduction . 112 Geological setting 112 Stratigraphy . .. 114 Previous work .. .. ... .. 114 Redefinition of the lithostratigraphic divisions. 115 Barun Goyot Formation ... 116 Nemegt Formation. .. .. 116 Relation between the observed profiles . 117 Petrographic description . .. 118 Clay and silt-grade sediments 119 Sand-grade sediments . .. 119 Intraformational gravels . 124 Exotic gravels . 124 Principal sediment types . 125 Flat-bedded sandstone units. 125 Mega cross-stratified units . 127 Massive, "structureless" sandstones. 134 Diversely stratified sandstones . 134 Alternating claystones and sandstones 136 Sedimentological interpretation 136 Occurrence of organic remains 140 Depositional environment . 141 Conclusions 143 Appen dix . 143 References . 144 Abstract. - The Barun Goyot Formation (previously termed Lower Nemegt Beds) is composed of clastic continental sediments of red-beds type; it is probably of Campanian age. The thickness of the formation exceeds 110 m. It is overlain by the Nemegt Formation (previously termed Upper Nemegt Beds), probably of Maast richtian age; the passage between the two format ions is gradual. A formal redefinition of the two Iithostra tigraphic divisions is presented in the paper. Five principal sediment types are distinguished in the Barun Goyot Formation, displaying sedimentary features indicative of various conditions of sedimentation. The lower part of the exposed profile of the Barun Goyot Formation is characterized by mega cross-stratified units, interpreted as dune deposits; they are intertonguing with water-deposited sediments laid in interdune areas. Chan nel deposits, attributed to intermittent streams are subordinate; massive sandstones, probably of various origin are predominating. The upper part of the profile of the formation is characterized by the predominance of flat-bedded sandstone units which were probabl y deposited in an intermittently flooded takyr-like area. -
A Evolução Dos Metatheria: Sistemática, Paleobiogeografia, Paleoecologia E Implicações Paleoambientais
UNIVERSIDADE FEDERAL DE PERNAMBUCO CENTRO DE TECNOLOGIA E GEOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM GEOCIÊNCIAS ESPECIALIZAÇÃO EM GEOLOGIA SEDIMENTAR E AMBIENTAL LEONARDO DE MELO CARNEIRO A EVOLUÇÃO DOS METATHERIA: SISTEMÁTICA, PALEOBIOGEOGRAFIA, PALEOECOLOGIA E IMPLICAÇÕES PALEOAMBIENTAIS RECIFE 2017 LEONARDO DE MELO CARNEIRO A EVOLUÇÃO DOS METATHERIA: SISTEMÁTICA, PALEOBIOGEOGRAFIA, PALEOECOLOGIA E IMPLICAÇÕES PALEOAMBIENTAIS Dissertação de Mestrado apresentado à coordenação do Programa de Pós-graduação em Geociências, da Universidade Federal de Pernambuco, como parte dos requisitos à obtenção do grau de Mestre em Geociências Orientador: Prof. Dr. Édison Vicente Oliveira RECIFE 2017 Catalogação na fonte Bibliotecária: Rosineide Mesquita Gonçalves Luz / CRB4-1361 (BCTG) C289e Carneiro, Leonardo de Melo. A evolução dos Metatheria: sistemática, paleobiogeografia, paleoecologia e implicações paleoambientais / Leonardo de Melo Carn eiro . – Recife: 2017. 243f., il., figs., gráfs., tabs. Orientador: Prof. Dr. Édison Vicente Oliveira. Dissertação (Mestrado) – Universidade Federal de Pernambuco. CTG. Programa de Pós-Graduação em Geociências, 2017. Inclui Referências. 1. Geociêcias. 2. Metatheria . 3. Paleobiogeografia. 4. Paleoecologia. 5. Sistemática. I. Édison Vicente Oliveira (Orientador). II. Título. 551 CDD (22.ed) UFPE/BCTG-2017/119 LEONARDO DE MELO CARNEIRO A EVOLUÇÃO DOS METATHERIA: SISTEMÁTICA, PALEOBIOGEOGRAFIA, PALEOECOLOGIA E IMPLICAÇÕES PALEOAMBIENTAIS Dissertação de Mestrado apresentado à coordenação do Programa de Pós-graduação