A New Diatom Species Found in an Alkaline Mountain
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Diatomic Compounds in the Soils of Bee-Farm and Nearby Territories in Samarskaya Oblast
BIO Web of Conferences 27, 00036 (2020) https://doi.org/10.1051/bioconf/20202700036 FIES 2020 Diatomic compounds in the soils of bee-farm and nearby territories in Samarskaya oblast N.Ye. Zemskova1,*, A.I. Fazlutdinova2, V.N. Sattarov2 and L.M. Safiullinа2 1Samara State Agrarian University, Ust-Kinelskiy, Samarskaya oblast, 446442, Russia 2Bashkir State Pedagogical University n.a. M. Akmulla, Ufa, 450008, Russia Abstract. This article sheds light on the role diatomic algae in soils play in the assessment of bee farm and nearby territories in four soil and landscape zones in Samarskaya Oblast. The community of diatomic algae is characterized by low species diversity, of which 23 taxons were found. The most often found species are represented by Hantzschia amphioxys (Ehrenberg) Grunow in Cleve & Grunow and Luticola mutica (Kützing) D.G.Mann in Round et al. The maximum of phyla (18) were found in the buffer (transient) zone; in the wooded steppe zone, 11 species were recorded; in the steppe – 2 species, and in the dry steppe zone no species of diatomic algae were found. The qualitative and quantitative characteristics of diatomic algae communities in various biotopes depend on the natural and climate features of a territory and the degree of the anthropogenic impact on the soil and vegetation, which is proved by the fact that high species wealth signifies that the ecosystem is stable and resilient to the changing conditions in the environment, while poor algal flora is less resilient due to the lower degree of diversity. 1 Introduction Diatomic algae play a special role in habitats with extreme conditions [6, 7]. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Resilience to Temperature and Ph Changes in a Future Climate Change Scenario
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Biogeosciences Discuss., 12, 4627–4654, 2015 www.biogeosciences-discuss.net/12/4627/2015/ doi:10.5194/bgd-12-4627-2015 BGD © Author(s) 2015. CC Attribution 3.0 License. 12, 4627–4654, 2015 This discussion paper is/has been under review for the journal Biogeosciences (BG). Resilience to Please refer to the corresponding final paper in BG if available. temperature and pH changes in a future Resilience to temperature and pH climate change changes in a future climate change scenario M. Pan£i¢ et al. scenario in six strains of the polar diatom Fragilariopsis cylindrus Title Page Abstract Introduction M. Pan£i¢1,2, P. J. Hansen3, A. Tammilehto1, and N. Lundholm1 Conclusions References 1Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark Tables Figures 2National Institute of Aquatic Resources, DTU Aqua, Section for Marine Ecology and Oceanography, Technical University of Denmark, Charlottenlund, Denmark 3Marine Biological Section, University of Copenhagen, Helsingør, Denmark J I Received: 12 February 2015 – Accepted: 6 March 2015 – Published: 20 March 2015 J I Correspondence to: M. Pan£i¢ ([email protected]) Back Close Published by Copernicus Publications on behalf of the European Geosciences Union. Full Screen / Esc Printer-friendly Version Interactive Discussion 4627 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Abstract BGD The effects of ocean acidification and increased temperature on physiology of six strains of the polar diatom Fragilariopsis cylindrus from Greenland were investigated. 12, 4627–4654, 2015 Experiments were performed under manipulated pH levels (8.0, 7.7, 7.4, and 7.1) and ◦ 5 different temperatures (1, 5 and 8 C) to simulate changes from present to plausible Resilience to future levels. -
In Streams from Three Conservation Units of Central Brazil: Pinnularia Ehrenberg1
Hoehnea 44(4): 524-538, 3 tab., 44 fig., 2017 http://dx.doi.org/10.1590/2236-8906-107/2016 Periphytic diatoms (Bacillariophyta) in streams from three Conservation Units of central Brazil: Pinnularia Ehrenberg1 Alline Alves França2, Bárbara Dunck3,6, Liliana Rodrigues4, Bárbara Medeiros Fonseca5 and Sirlene Aparecida Felisberto2 Received: 12.12.2016; accepted: 9.07.2017 ABSTRACT - (Periphytic diatoms (Bacillariophyta) in streams from three Conservation Units of central Brazil: Pinnularia Ehrenberg). This study aimed to survey the genus Pinnularia Ehrenberg (Bacillariophyta) in five preserved streams located in three conservation units (Brasília National Park, Chapada dos Veadeiros National Park and Terra Ronca State Park). Periphyton was collected in different substrata during the dry and rainy seasons (years 2012 to 2013), totalizing 25 sample units. Altogether, 23 taxa were identified, beingP. subanglica, P. angustivalva and P. butantanum the most frequent. Pebble and sand were the richest substrates, with nine taxa each. Among the 23 taxa reported, 13 are cited for the first time for the central Brazil: P. angusta var. angusta, P. angustivalva, P. butantanum, P. divergens var. biconstricta, P. divergens var. mesoleptiformis, P. gibba var. subundulata, P. paulensis, P. persudetica var. persudetica, P. subgibba var. angustarea, P. subgibba var. capitada, P. superpaulensis, P. viridiformis var. minor and P. undula var. undula. Keywords: biodiversity, Cerrado, diatom, periphyton, pristine lotic systems RESUMO - (Diatomáceas perifíticas (Bacillariophyta) em riachos de três Unidades de Conservação do Brasil Central: Pinnularia Ehrenberg). Este estudo objetivou inventariar o gênero Pinnularia Ehrenberg (Bacillariophyta) em cinco riachos preservados localizados em três unidades de conservação (Parque Nacional de Brasília, Parque Nacional da Chapada dos Veadeiros e Parque Estadual de Terra Ronca). -
A Review of Diatom Lipid Droplets
biology Review A Review of Diatom Lipid Droplets Ben Leyland, Sammy Boussiba and Inna Khozin-Goldberg * Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, The J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel; [email protected] (B.L.); [email protected] (S.B.) * Correspondence: [email protected]; Tel.: +972-8656-3478 Received: 18 December 2019; Accepted: 14 February 2020; Published: 21 February 2020 Abstract: The dynamic nutrient availability and photon flux density of diatom habitats necessitate buffering capabilities in order to maintain metabolic homeostasis. This is accomplished by the biosynthesis and turnover of storage lipids, which are sequestered in lipid droplets (LDs). LDs are an organelle conserved among eukaryotes, composed of a neutral lipid core surrounded by a polar lipid monolayer. LDs shield the intracellular environment from the accumulation of hydrophobic compounds and function as a carbon and electron sink. These functions are implemented by interconnections with other intracellular systems, including photosynthesis and autophagy. Since diatom lipid production may be a promising objective for biotechnological exploitation, a deeper understanding of LDs may offer targets for metabolic engineering. In this review, we provide an overview of diatom LD biology and biotechnological potential. Keywords: diatoms; lipid droplets; triacylglycerols 1. Introduction LDs are an organelle composed of a core of neutral lipids, mostly triacylglycerol (TAG), surrounded by a polar lipid monolayer [1,2]. LDs can store reserves of energy, membrane components, carbon skeletons, carotenoids and proteins [3,4]. Many different synonyms have been used to describe this organelle throughout the literature and they can vary between organisms, such as lipid bodies, lipid particles, oil bodies, oil globules, cytoplasmic inclusions, oleosomes and adiposomes. -
Pinnularia Schoelynckiana, a New Limnoterrestrial
Pinnularia schoelynckiana, a new limnoterrestrial diatom species (Bacillariophyta) from the sub-Antarctic Iles Kerguelen (southern Indian Ocean) Bart van de Vijver, Pieter Scholberg, Marc Lebouvier To cite this version: Bart van de Vijver, Pieter Scholberg, Marc Lebouvier. Pinnularia schoelynckiana, a new limnoterres- trial diatom species (Bacillariophyta) from the sub-Antarctic Iles Kerguelen (southern Indian Ocean). Botany Letters, Taylor & Francis, 2020, 167 (1), pp.42-49. 10.1080/23818107.2019.1675185. hal- 02391114 HAL Id: hal-02391114 https://hal-univ-rennes1.archives-ouvertes.fr/hal-02391114 Submitted on 17 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Pinnularia schoelynckiana, a new limnoterrestrial diatom species (Bacillariophyta) from the sub-Antarctic Iles Kerguelen (southern Indian Ocean) Bart Van de Vijver1,2, Pieter Scholberg1,2 and Marc Lebouvier3 1Meise Botanic Garden, Research Department, Nieuwelaan 38, B-1860 Meise, Belgium 2University of Antwerp, Department of Biology, ECOBE, Universiteitsplein 1, B-2610 Wilrijk, Belgium 3UMR 6553 Ecobio CNRS, Université de Rennes 1, Station Biologique, F-35380 Paimpont, France Abstract An unknown Pinnularia taxon was recorded during a survey of the limno-terrestrial diatom flora of some hot springs in the Val Travers area (Grand Terre, Iles Kerguelen, sub-Antarctic region). -
Taxonomic Survey of Benthic Diatoms on Natural Substrata from Coastal Lagoon (Aegean Sea, Turkey)
www.trjfas.org ISSN 1303-2712 Turkish Journal of Fisheries and Aquatic Sciences 12: 841-849 (2012) DOI: 10.4194/1303-2712-v12_4_12 Taxonomic Survey of Benthic Diatoms on Natural Substrata From Coastal Lagoon (Aegean Sea, Turkey) Fatma Çolak Sabancı1,* 1 Ege University, Fisheries Faculty, Department of Hydrobiology, 35100 Bornova, İzmir, Turkey. * Corresponding Author: Tel.: +90.232 3111010/5206; Fax: +90.232 3883685; Received 28 May 2012 E-mail: [email protected] Accepted 17 October 2012 Abstract The taxonomical composition of epilithic diatoms was investigated at intertidal zone of Homa lagoon, Aegean sea, Turkey. The stations are located in different littoral zones of the study area and they are different from each other in terms of hydrological respect. The samples contained a mixture of forms growing on the stones themselves, on silt accumulated on the stones and forms epiphytic on other algae, I will refer to this collective community as epilithon. Epilithic diatom species, which constitute the majority of the community were examined from obtained material. A total of 67 diatom taxa belonging to 34 genera were identified to the genus or species level. The species more frequently found in the samples were Cocconeis placentula, Cocconeis scutellum, Mastogloia pumila, Navicula cincta and Navicula crypyocephala var. veneta. Nine of the species identified during the research period seem to be previously unreported for Turkish coastal waters. Morphological characteristics of these species were given in detail information and original photographs. Keywords: Epilithic diatom, species identification, Homa lagoon, Aegean Sea, Eastern Mediterranean Sea. Kıyısal Lagündeki (Ege Denizi, Türkiye) Doğal Substratumda Bulunan Bentik Diyatomelerin Taksonomik Olarak İncelenmesi Özet Epilitik diyatomelerin tür kompozisyonu, Homa lagününün (Ege Denizi, Türkiye) kıyısal zonunda incelenmiştir. -
Diatom Distribution in the Lower Save River, Mozambique
Department of Physical Geography Diatom distribution in the lower Save River, Mozambique Taxonomy, salinity gradient and taphonomy Marie Christiansson Master’s thesis NKA 156 Physical Geography and Quaternary Geology, 60 Credits 2016 Preface This Master’s thesis is Marie Christiansson’s degree project in Physical Geography and Quaternary Geology at the Department of Physical Geography, Stockholm University. The Master’s thesis comprises 60 credits (two terms of full-time studies). Supervisor has been Jan Risberg at the Department of Physical Geography, Stockholm University. Examiner has been Stefan Wastegård at the Department of Physical Geography, Stockholm University. The author is responsible for the contents of this thesis. Stockholm, 11 September 2016 Steffen Holzkämper Director of studies Abstract In this study diatom distribution within the lower Save River, Mozambique, has been identified from surface sediments, surface water, mangrove cortex and buried sediments. Sandy units, bracketing a geographically extensive clay layer, have been dated with optical stimulated luminescence (OSL). Diatom analysis has been used to interpret the spatial salinity gradient and to discuss taphonomic processes within the delta. Previously, one study has been performed in the investigated area and it is of great importance to continue to identify diatom distributions since siliceous microfossils are widely used for paleoenvironmental research. Two diatom taxa, which were not possible to classify to species level have been identified; Cyclotella sp. and Diploneis sp. It is suggested that these represent species not earlier described; however they are assigned a brackish water affinity. Diatom analysis from surface water, surface sediments and mangrove cortex indicate a transition from ocean water to a dominance of freshwater taxa c. -
Towards a Digital Diatom: Image Processing and Deep Learning Analysis of Bacillaria Paradoxa Dynamic Morphology
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.21.885897; this version posted December 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Towards a Digital Diatom: image processing and deep learning analysis of Bacillaria paradoxa dynamic morphology Bradly Alicea1,2, Richard Gordon3,4, Thomas Harbich5, Ujjwal Singh6, Asmit Singh6, Vinay Varma7 Abstract Recent years have witnessed a convergence of data and methods that allow us to approximate the shape, size, and functional attributes of biological organisms. This is not only limited to traditional model species: given the ability to culture and visualize a specific organism, we can capture both its structural and functional attributes. We present a quantitative model for the colonial diatom Bacillaria paradoxa, an organism that presents a number of unique attributes in terms of form and function. To acquire a digital model of B. paradoxa, we extract a series of quantitative parameters from microscopy videos from both primary and secondary sources. These data are then analyzed using a variety of techniques, including two rival deep learning approaches. We provide an overview of neural networks for non-specialists as well as present a series of analysis on Bacillaria phenotype data. The application of deep learning networks allow for two analytical purposes. Application of the DeepLabv3 pre-trained model extracts phenotypic parameters describing the shape of cells constituting Bacillaria colonies. Application of a semantic model trained on nematode embryogenesis data (OpenDevoCell) provides a means to analyze masked images of potential intracellular features. -
Third NAWQA Diatom Taxonomy Harmonization Workshop
Third NAWQA Diatom Taxonomy Harmonization Workshop Report No. 00-8 The Patrick Center for Environmental Research and Michigan State University held 1-3 May 2000 at The Academy of Natural Sciences 1900 Benjamin Franklin Parkway Philadelphia, PA 19103-1195 Prepared by Eduardo A. Morales and Marina Potapova June 1, 2000 INTRODUCTION The Third NAWQA Workshop on Harmonization of Algal Taxonomy was held at The Academy of Natural Sciences on 1-3 May 2000. Dr. R.J. Stevenson and Kalina Manoylova of Michigan State University; Dr. Donald F. Charles, Frank Acker, Todd A. Clason, Patrick Cotter, Candia Knowles, Kalina Manoylova, Lont Marr, Eduardo A. Morales, Marina Potapova, and Dr. Charles W. Reimer of The Academy of Natural Sciences’ Patrick Center for Environmental Research; and William R. Cody, a private consultant based in the State of Ohio, participated in the workshop. The primary purpose of the workshop was to develop and agree on nomenclature to use when analyzing NAWQA 1997-start algae samples, collected in 1999-2001. Other objectives are summarized in the attached list of Agenda items (Appendix 1). Results of discussion of these other items are reported in separate memos and are not included here. The U.S. Geological Survey’s National Water Quality Assessment (NAWQA) program concentrates on the study of nearly 60 major watersheds in the United States. Each of these watersheds is called a Study Unit (SU). Approximately 15 to 20 SUs are investigated at a time. To date, three sets of SUs, or "starts," have been collected: the 1991, 1994, and 1997-starts. Algal samples from each SU are collected over a three-year period, usually beginning after two years of planning and site selection.