Lesson 2.Carbohydrates
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A by Fluorous-Tag Assistance Th
Angewandte Chemie DOI: 10.1002/ange.200704262 Carbohydrate Microarrays Synthesis and Quantitative Evaluation of Glycero-d-manno-heptose Binding to Concanavalin A by Fluorous-Tag Assistance** Firoz A. Jaipuri, Beatrice Y. M. Collet, and Nicola L. Pohl* Herein we report the first use of a quantitative fluorous approach has proven valuable for the probing of other classes microarray strategy to show that the mannose-binding lectin of small molecules.[2] In the case of histone deacetylase concanavalin A (conA), contrary to prevailing belief, actually inhibitors with dissocation constants of less than 0.1s À1, the can accept modifications of the mannose at the C-6 position in hits found by fluorous microarrays were comparable to those the form of glycero-manno-heptoses found on pathogenic found by techniques such as surface plasmon resonance bacteria (Figure 1). The well-known mannose–conA interac- (SPR) and solution-based biochemical assays.[2a] Ideally, of course, the relative quantification of these binding interac- tions could also be carried out within the same fluorous microarray screening format. ConA is a plant lectin that is widely used like antibodies as research tools and diagnostics to identify the presence of specific sugars, such as mannose, on cells;[3] however, in reality the sugar specificities of lectins have not been tested broadly, especially against less readily available carbohydrates. ConA is the most-studied lectin and is usually considered to bind terminal alpha-linked mannose, glucose, and N-acetylglucos- amine. Earlier inhibition data suggest that modifications at the C-3, C-4, and C-6 positions of the d-mannopyranose deter binding to conA.[4] In particular, the loss of the hydroxy group in the C-6 position as in 6-deoxy-d-mannose and 1,6-anhydro- b-d-manno-pyranose result in complete loss of activity. -
(12) United States Patent (10) Patent No.: US 6,713,116 B1 Aldrich Et Al
USOO6713116B1 (12) United States Patent (10) Patent No.: US 6,713,116 B1 Aldrich et al. (45) Date of Patent: Mar. 30, 2004 (54) SWEET-STABLE ACIDIFIED BEVERAGES 4,957,763 A 9/1990 Saita et al. ................. 426/548 5,169,671. A 12/1992 Harada et al. .............. 426/658 (75) Inventors: Jessica A. Aldrich, Hazlet, NJ (US); 5,380,541 A 1/1995 Beyts et al. ................ 426/548 Lisa Y. Hanger, Basking Ridge, NJ 5.431,929 A 7/1995 Yatka et al. ................... 426/3 5,731,025 A 3/1998 Mitchell ..................... 426/548 (US); Guido Ritter, Laer (DE) 6,322,835 B1 * 11/2001 De Soete et al. ........... 426/453 (73) Assignee: Nutrinova Inc., Somerset, NJ (US) 6,372.277 B1 * 4/2002 Admiraal et al. ........... 426/548 FOREIGN PATENT DOCUMENTS (*) Notice: Subject to any disclaimer, the term of this patent is extended or adjusted under 35 W WO as: : 3.1. - - - - - - - - - - - A23L/1/236 U.S.C. 154(b) by 0 days. WO WO 98/19564 5/1998 ............. A23L/2/60 (21) Appl. No.: 09/675,825 OTHER PUBLICATIONS (22) Filed: Sep. 29, 2000 Widemann et al., “Synergistic Sweeteners”, Food Ingred. and Analysis Int., 19(6):51-52, 55-56 (abstract only), Dec. Related U.S. Application Data 1997.* (63) Continuation-in-part of application No. 09/186,275, filed on sk cited- by examiner Nov. 5, 1998, now abandoned. Primary Examiner Keith Hendricks (60) Pisional application No. 60/079,408, filed on Mar. 26, (74) Attorney, Agent, or Firm-ProPat, L.L.C. (51) Int. Cl. -
Effect of Metal Chlorides on Glucose Mutarotation and Possible Implications on Humin Formation
Reaction Chemistry & Engineering Effect of Metal Chlorides on Glucose Mutarotation and Possible Implications on Humin Formation Journal: Reaction Chemistry & Engineering Manuscript ID RE-COM-10-2018-000233.R1 Article Type: Communication Date Submitted by the 28-Nov-2018 Author: Complete List of Authors: Ramesh, Pranav; Rutgers The State University of New Jersey, Chemical and Biochemical Engineering Kritikos, Athanasios; Rutgers The State University of New Jersey, Chemical and Biochemical Engineering Tsilomelekis, George; Rutgers The State University of New Jersey, Chemical and Biochemical Engineering Page 1 of 5 ReactionPlease doChemistry not adjust & Engineering margins Journal Name COMMUNICATION Effect of Metal Chlorides on Glucose Mutarotation and Possible Implications on Humin Formation a a a Received 00th January 20xx, Pranav Ramesh , Athanasios Kritikos and George Tsilomelekis * Accepted 00th January 20xx DOI: 10.1039/x0xx00000x www.rsc.org/ An in-situ Raman spectroscopic kinetic study of the glucose suggested that the possible changes in the anomeric mutarotation reaction is presented herein. The effect of metal equilibrium especially via the stabilization of the α-anomer of chlorides on the ease of ring opening process is discussed. It is glucose, might be responsible for improved selectivity towards 7, 8 shown that SnCl4 facilitates the mutarotation process towards the fructose . This also agrees with the concept of anomeric β-anomer extremely fast, while CrCl3 appears to promote the specificity of enzymes; for instance, immobilized D-glucose formation of the α-anomer of glucose. Infrared spectra of humins isomerase has shown ~40% and ~110% higher conversion rates prepared in different Lewis acids underscore the posibility of starting with α–D-glucose as compared to equilibrated glucose multiple reaction pathways. -
Carbohydrate Composition of Endotoxins from R-Type Isogenic Mutants of Shigella Sonnei Studied by Capillary Electrophoresis and GC-MS†
CROATICA CHEMICA ACTA CCACAA, ISSN 0011-1643, e-ISSN 1334-417X Croat. Chem. Acta 84 (3) (2011) 393–398. CCA-3487 Original Scientific Article Carbohydrate Composition of Endotoxins from R-type Isogenic Mutants of Shigella sonnei Studied by Capillary Electrophoresis and GC-MS† Annamária Bui,a Anikó Kilár,b,c Ágnes Dörnyei,a,c Viktória Poór,a Krisztina Kovács,b Béla Kocsis,b and Ferenc Kilára,c,* aInstitute of Bioanalysis, Faculty of Medicine, University of Pécs, Szigeti út 12., H-7624 Pécs bDepartment of Medical Microbiology and Immunology, Faculty of Medicine, University of Pécs, Szigeti út 12., H-7624 Pécs, Hungary cDepartment of Analytical and Environmental Chemistry, Faculty of Sciences, University of Pécs, Ifjúság útja 6., H-7624 Pécs, Hungary RECEIVED NOVEMBER 9, 2010; REVISED FEBRUARY 5, 2011; ACCEPTED MAY 13, 2011 Abstract. The carbohydrate composition of the rough-type endotoxins (lipopolysaccharides, LPSs) from Shigella sonnei mutant strains (Shigella sonnei phase II - 4303, 562H, R41 and 4350) was investigated by capillary electrophoresis and GC-MS. The monosaccharides obtained by hydrolysis were determined by capillary electrophoresis combined with laser induced fluorescence detection (CE-LIF) after labeling with 8-aminopyrene-1,3,6-trisulfonic acid (APTS) and by GC-MS as alditol-acetate derivatives. It was ob- tained that the lipopolysaccharides of the isogenic rough mutants are formed in a step-like manner, con- taining no heptose (4350), one D-glycero-D-mannoheptose (562H), or two or three L-glycero-D- mannoheptoses (R41, 4303, respectively) in the deep core region. Besides the heptoses, the longest LPS from the mutant Shigella sonnei 4303 contains hexoses, such as glucoses and galactoses, in a pro- portion of approximately 3:2. -
Carbohydrates: Structure and Function
CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group. -
Structural Features
1 Structural features As defined by the International Union of Pure and Applied Chemistry gly- cans are structures of multiple monosaccharides linked through glycosidic bonds. The terms sugar and saccharide are synonyms, depending on your preference for Arabic (“sukkar”) or Greek (“sakkēaron”). Saccharide is the root for monosaccha- rides (a single carbohydrate unit), oligosaccharides (3 to 20 units) and polysac- charides (large polymers of more than 20 units). Carbohydrates follow the basic formula (CH2O)N>2. Glycolaldehyde (CH2O)2 would be the simplest member of the family if molecules of two C-atoms were not excluded from the biochemical repertoire. Glycolaldehyde has been found in space in cosmic dust surrounding star-forming regions of the Milky Way galaxy. Glycolaldehyde is a precursor of several organic molecules. For example, reaction of glycolaldehyde with propenal, another interstellar molecule, yields ribose, a carbohydrate that is also the backbone of nucleic acids. Figure 1 – The Rho Ophiuchi star-forming region is shown in infrared light as captured by NASA’s Wide-field Infrared Explorer. Glycolaldehyde was identified in the gas surrounding the star-forming region IRAS 16293-2422, which is is the red object in the centre of the marked square. This star-forming region is 26’000 light-years away from Earth. Glycolaldehyde can react with propenal to form ribose. Image source: www.eso.org/public/images/eso1234a/ Beginning the count at three carbon atoms, glyceraldehyde and dihydroxy- acetone share the common chemical formula (CH2O)3 and represent the smallest carbohydrates. As their names imply, glyceraldehyde has an aldehyde group (at C1) and dihydoxyacetone a carbonyl group (at C2). -
The Isolation and Partial Characterization of the Lipopolysaccharides from Rhizobium Leguminosarum Biovar Trifolii Strains TB4, TB104, and TB112 (Llne)
Eastern Illinois University The Keep Masters Theses Student Theses & Publications 1990 The solI ation and Partial Characterization of the Lipopolysaccharides from Rhizobium leguminosarum biovar trifolii strains TB4, TB104, and TB112 Jill K. Miller Eastern Illinois University This research is a product of the graduate program in Zoology at Eastern Illinois University. Find out more about the program. Recommended Citation Miller, Jill K., "The sI olation and Partial Characterization of the Lipopolysaccharides from Rhizobium leguminosarum biovar trifolii strains TB4, TB104, and TB112" (1990). Masters Theses. 2302. https://thekeep.eiu.edu/theses/2302 This is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. THESIS REPRODUCTION CERTIFICATE TO: Graduate Degree Candidates who have written formal theses. SUBJECT: Permission to reproduce theses. The University Library is receiving a number of requests from other institutions asking permission to reproduce dissertations for inclusion in their library holdings. Although no copyright laws are involved, we feel that professional courtesy demands that permission be obtained from the author before we allow theses to be copied. Please sign one of the following statements: Booth Library of Eastern Illinois University has my permission to lend my thesis to a reputable college or university for the purpose of copying it for inclusion in that institution's library or research holdings. l f ttJ9o I Date I respectfully request Booth Library of Eastern Illinois University not allow my thesis be reproduced because -------------- Date Author m The Isolation and Partial Characterization of the Lipopolysaccharides from Rhizobium leguminosarum biovar trifolii strains TB4, TB104, and TB112 (llnE) BY Jill K. -
Structures and Characteristics of Carbohydrates in Diets Fed to Pigs: a Review Diego M
Navarro et al. Journal of Animal Science and Biotechnology (2019) 10:39 https://doi.org/10.1186/s40104-019-0345-6 REVIEW Open Access Structures and characteristics of carbohydrates in diets fed to pigs: a review Diego M. D. L. Navarro1, Jerubella J. Abelilla1 and Hans H. Stein1,2* Abstract The current paper reviews the content and variation of fiber fractions in feed ingredients commonly used in swine diets. Carbohydrates serve as the main source of energy in diets fed to pigs. Carbohydrates may be classified according to their degree of polymerization: monosaccharides, disaccharides, oligosaccharides, and polysaccharides. Digestible carbohydrates include sugars, digestible starch, and glycogen that may be digested by enzymes secreted in the gastrointestinal tract of the pig. Non-digestible carbohydrates, also known as fiber, may be fermented by microbial populations along the gastrointestinal tract to synthesize short-chain fatty acids that may be absorbed and metabolized by the pig. These non-digestible carbohydrates include two disaccharides, oligosaccharides, resistant starch, and non-starch polysaccharides. The concentration and structure of non-digestible carbohydrates in diets fed to pigs depend on the type of feed ingredients that are included in the mixed diet. Cellulose, arabinoxylans, and mixed linked β-(1,3) (1,4)-D-glucans are the main cell wall polysaccharides in cereal grains, but vary in proportion and structure depending on the grain and tissue within the grain. Cell walls of oilseeds, oilseed meals, and pulse crops contain cellulose, pectic polysaccharides, lignin, and xyloglucans. Pulse crops and legumes also contain significant quantities of galacto-oligosaccharides including raffinose, stachyose, and verbascose. -
Carbohydrates
Carbohydrates Carbohydrates Copyright © 2007 by Pearson Education, Inc. Publishing as Benjamin Cummings 1 Carbohydrates Carbohydrates are ▪ A major source of energy from our diet. ▪ Composed of the elements C, H, and O. ▪ Also called saccharides, which means “sugars.” Copyright © 2007 by Pearson Education, Inc. Publishing as Benjamin Cummings 2 Carbohydrates Carbohydrates ▪ Are produced by photosynthesis in plants. ▪ Such as glucose are synthesized in plants from CO2, H2O, and energy from the sun. ▪ Are oxidized in living cells (respiration) to produce CO2, H2O, and energy. Copyright © 2007 by Pearson Education, Inc Publishing as Benjamin Cummings 3 ▪ Carbohydrates – polyhydroxyaldehydes or polyhydroxy-ketones of formula (CH2O)n, or compounds that can be hydrolyzed to them. (sugars or saccharides) ▪ Monosaccharides – carbohydrates that cannot be hydrolyzed to simpler carbohydrates; eg. Glucose or fructose. ▪ Disaccharides – carbohydrates that can be hydrolyzed into two monosaccharide units; eg. Sucrose, which is hydrolyzed into glucose and fructose. ▪ Oligosaccharides – carbohydrates that can be hydrolyzed into a few monosaccharide units. ▪ Polysaccharides – carbohydrates that are are polymeric sugars; eg Starch or cellulose. 4 ▪ Aldose – polyhydroxyaldehyde, eg glucose ▪ Ketose – polyhydroxyketone, eg fructose ▪ Triose, tetrose, pentose, hexose, etc. – carbohydrates that contain three, four, five, six, etc. carbons per molecule (usually five or six); eg. Aldohexose, ketopentose, etc. ▪ Reducing sugar – a carbohydrate that is oxidized by Tollen’s, Fehling’s or Benedict’s solution. ▪ Tollen’s: Ag+ → Ag (silver mirror) ▪ Fehling’s or Benedict’s: Cu2+ (blue) → Cu1+ (red ppt) ▪ These are reactions of aldehydes and alpha-hydroxyketones. ▪ All monosaccharides (both aldoses and ketoses) and most* disaccharides are reducing sugars. ▪ *Sucrose (table sugar), a disaccharide, is not a reducing sugar. -
Chapter 6 Carbohydrates Outline 6.1 Classes of Carbohydrates 6.1
2/25/2015 Outline Lecture Presentation • 6.1 Classes of Carbohydrates • 6.2 Functional Groups in Monosaccharides Chapter 6 • 6.3 Stereochemistry in Monosaccharides Carbohydrates • 6.4 Reactions of Monosaccharides • 6.5 Disaccharides • 6.6 Polysaccharides Julie Klare • 6.7 Carbohydrates and Blood Fortis College Smyrna, GA © 2014 Pearson Education, Inc. © 2014 Pearson Education, Inc. 6.1 Classes of Carbohydrates 6.1 Classes of Carbohydrates • The simplest carbohydrates are • Disaccharides consist of two monosaccharide monosaccharides (mono is Greek for “one,” units joined together. sakkhari is Greek for “sugar”). • A disaccharide can be split into two • These often sweet-tasting sugars cannot be monosaccharide units. Ordinary table sugar, broken down into smaller carbohydrates. sucrose, C12H22O11, is a disaccharide that can be broken up, through hydrolysis, into the • The common carbohydrate glucose, C6H12O6, is a monosaccharide. monosaccharides glucose and fructose. • Monosaccharides contain carbon, hydrogen, • Oligosaccharidesare carbohydrates and oxygen and have the general formula containing three to nine monosaccharide units. The blood-typing groups known as ABO are Cn(H2O)n, where n is a whole number 3 or higher. oligosaccharides. © 2014 Pearson Education, Inc. © 2014 Pearson Education, Inc. 6.1 Classes of Carbohydrates 6.1 Classes of Carbohydrates • When 10 or more monosaccharide units are joined together, the large molecules that result are polysaccharides (poly is Greek for “many”). • The sugar units can be connected in one continuous chain or the chain can be branched. • Starch, a polysaccharide in plants, contains branched chains of glucose that can be broken down to produce energy. © 2014 Pearson Education, Inc. © 2014 Pearson Education, Inc. 1 2/25/2015 6.1 Classes of Carbohydrates 6.1 Classes of Carbohydrates FIBER IN YOUR DIET FIBER IN YOUR DIET • Dietary fibers are carbohydrates that we cannot digest • Insoluble fibers do not mix with water, although they with our own enzymes. -
Monosaccharides
UNIT 5 MONOSACCHARIDES Structure 5.1 Introduction 5.4 Biologically Important Sugar Derivatives Expected Learning Outcomes Sugar Acids 5.2 Overview of Carbohydrates Sugar Alcohols Amino Sugars 5.3 Monosaccharides Deoxy Sugars Linear Structure Sugar Esters Ring Structure Glycosides Conformations 5.5 Summary Stereoisomers 5.6 Terminal Questions Optical Properties 5.7 Answers 5.8 Further Readings 5.1 INTRODUCTION Carbohydrates constitute the most abundant organic molecules found in nature and are widely distributed in all living organisms. These are synthesized in nature by green plants, algae and some bacteria by photosynthesis. They also form major part of our diet and provide us energy required for the life sustaining activities such as growth, metabolism and reproduction. At microscopic level, these constitute the structural components of the cell such as cell membrane and cell wall. In this unit, we shall begin with general overview of the chemical nature of carbohydrates and their classification. The unit focuses mainly on the simplest carbohydrates known as monosaccharides. We shall learn about the chemical structures of different monosaccharides and how to draw them. We shall also discuss their stereochemistry in detail which would help to understand how change in orientation of same substituents results in different molecules with same chemical formula but different properties. We shall also discuss about some of the chemical reactions of monosaccharides resulting in 77 formation of important derivatives and their biological importance. -
Mutarotation
13 Mutarotation The α and β anomers are diastereomers of each other and usually have different specific rotations. A solution or liquid sample of a pure α anomer will rotate plane polarised light by a different amount and/or in the opposite direction than the pure β anomer of that compound. The optical rotation of the solution depends on the optical rotation of each anomer and their ratio in the solution. For example, if a solution of β-D-glucopyranose is dissolved in water, its specific optical rotation will be +18.7°. Over time, some of the β-D-glucopyranose will undergo mutarotation to become α-D-glucopyranose, which has an optical rotation of +112.2°. Thus the rotation of the solution will increase from +18.7° to an equilibrium value of +52.7° as some of the β form is converted to the α form. The equilibrium mixture is actually about 64% of β-D-glucopyranose and about 36% of α-D-glucopyranose, though there are also traces of the other forms including furanoses and open chained form. The α anomer is the major conformer, although somewhat controversially; this is due to the anomeric effect with the stabilization energy provided by n–σ* hyperconjugation. The observed rotation of the sample is the weighted sum of the optical rotation of each anomer weighted by the amount of that anomer present. 14 Therefore, one can use a polarimeter to measure the rotation of a sample and then calculate the ratio of the two anomers present from the enantiomeric excess, as long as one knows the rotation of each pure anomer.