Supplementary tables/datasets:

S1: Comparison of normalized extracellular protease expression by phylum using ANOVA followed by Tukey HSD tests

S2: Comparison of normalized extracellular protease expression by class using ANOVA followed by Tukey HSD tests

S3: Comparison of normalized extracellular protease expression by order using ANOVA followed by Tukey HSD tests

S4: Comparison of extracellular protease expression by time, treatment (litter amendment) and location (rhizosphere or bulk soil) by structural groups: serinepeptidase, metallopeptidase and cysteinepeptidase. Both parametric (ANOVA+Tukey HSD) and non-parametric (Kruskal- Wallis+Dunn test) analyses are included and are in agreement.

Supplemetary figure titles:

S1: Functional guilds determined by upregulation of extracellular protease open reading frames assembled from metatranscriptomes. Green = rhizosphere guild, cyan = detritusphere guild

S2: Aggregated normalized expression of extracellular proteases by phylum (log transformed) with hierarchical clustering.

S3: Aggregated normalized expression of extracellular proteases by class (log transformed) with hierarchical clustering.

S4: Aggregated normalized expression of extracellular proteases by order (log transformed) with hierarchical clustering.

S5: phylogenomic tree of betaproteobacteria showing that the MAG Burkholderiales_62_29 clusters with Rhizobacter gummiphilus. The outgroup was alphaproteobacteria. Supplementary table S1 Phylum p time p treat p loc p time:treat p time:loc p treat:loc p time:treat:loc 0.196 0.001 0.048 0.008 0.34 0.03 0.855 0.004 0.819 0.025 0.406 0.974 0.766 0.943 Thaumarchaeota 0.05 0.181 0.001 0.603 0.03 0.443 0.585 2.88E-09 0.019 0.022 0.914 0.306 0.627 0.362 0.078 0.12 0.124 0.275 0.388 0.117 0.259 Uroviricota 0.166 0.169 0.766 0.835 0.221 0.91 0.468 0.000756 5.01E-08 0.582 5.74E-07 0.301 0.89 0.446 Chlorobi 8.58E-05 0.654 0.714 0.349 0.812 0.386 0.488 3.42E-05 2.88E-07 0.56 0.037 0.232 0.455 0.046 0.028 0.006 0.012 0.775 0.298 0.576 0.029 2.68E-09 0.059 0.134 0.228 0.226 0.399 0.428 Euryarchaeota 5.80E-05 0.523 0.043 0.025 0.000921 0.428 0.208 Deinococcus-Thermus 0.002 0.015 0.311 0.246 0.656 0.028 0.006 1.20E-06 0.459 0.694 0.421 0.295 0.513 0.392 0.000176 0.506 0.073 0.041 0.512 0.852 0.759 Candidatus Dormibacteraeota 0.004 0.936 0.048 0.885 0.113 0.099 0.326 1.60E-05 0.827 1.17E-06 0.433 0.521 0.995 0.44 0.695 0.06 0.357 0.642 0.518 0.297 0.538 2.64E-05 1.11E-10 0.374 6.77E-05 0.116 0.14 0.221 0.235 0.001 0.08 0.216 0.473 0.116 0.561 0.98 0.003 0.345 0.995 0.571 0.321 0.285 Candidatus Aerophobetes 0.598 0.159 0.289 0.568 0.625 0.236 0.613 0.000257 0.000109 0.454 0.016 0.559 0.92 0.637 3.40E-07 0.028 0.259 0.324 0.45 0.907 0.146 Rhodothermaeota 0.042 0.185 0.603 0.323 0.14 0.696 0.405 0.072 0.007 0.319 0.102 0.404 0.348 0.455 Calditrichaeota 0.375 0.172 0.667 0.292 0.403 0.546 0.521 candidate division NC10 0.05 0.733 0.822 0.081 0.39 0.488 0.391 Candidatus Rokubacteria 6.26E-05 0.173 0.938 0.027 0.018 0.028 0.931 Candidatus 2.34E-12 0.025 0.16 0.000428 0.005 0.451 0.023 Candidatus Aureabacteria 0.000459 0.892 0.19 0.964 0.278 0.96 0.755 Candidatus Roizmanbacteria 7.10E-06 0.015 0.266 0.074 0.72 0.135 0.079 Candidatus Bathyarchaeota 0.042 0.535 0.348 0.587 0.878 0.317 0.939 candidate division WOR-3 0.363 0.071 0.116 0.809 0.886 0.747 0.227 Lentisphaerae 1.52E-05 0.921 0.002 0.881 8.77E-05 0.833 0.947 Basidiomycota 0.587 0.197 0.257 0.919 0.255 0.87 0.494 Ascomycota 0.001 6.58E-12 0.518 0.000146 0.14 0.206 0.165 Mucoromycota 0.202 4.76E-05 0.385 0.184 0.335 0.393 0.248 Zoopagomycota 0.00042 0.000164 0.8 0.000527 0.608 0.957 0.689 Chytridiomycota 0.374 0.021 0.61 0.842 0.507 0.527 0.57 Cryptomycota 3.24E-06 0.001 0.115 0.000861 0.678 0.459 0.907 Blastocladiomycota 0.235 0.04 0.344 0.22 0.865 0.359 0.863 Supplementary table S2 Class p time p treat p loc p time:treat p time:loc Alphaproteobacteria 4.65E-05 0.335 0.018 0.231 0.915 Nitrososphaeria 0.049 0.183 0.001 0.623 0.031 Actinobacteria 2.36E-07 0.093 0.078 0.856 0.047 Bacilli 0.099 0.435 0.356 0.579 0.714 Caudoviricetes 0.166 0.169 0.766 0.835 0.221 Betaproteobacteria 0.074 0.599 7.10E-05 0.514 0.152 Chitinophagia 0.000187 7.04E-07 0.543 1.56E-06 0.362 Acidobacteriia 5.34E-05 0.857 0.386 0.75 0.676 Chlorobia 5.23E-06 0.004 0.19 0.114 0.752 Sphingobacteriia 0.000195 0.214 0.343 0.078 0.117 Planctomycetia 0.023 0.007 0.013 0.694 0.377 Clostridia 0.155 0.156 0.197 0.064 0.058 Deltaproteobacteria 5.22E-07 7.84E-07 0.287 0.007 0.005 Saprospiria 1.41E-07 0.174 0.714 0.265 0.172 Thermoleophilia 5.10E-09 0.015 0.021 0.357 0.509 Methanomicrobia 5.22E-05 0.537 0.044 0.025 0.000967 Deinococci 0.002 0.015 0.311 0.246 0.656 Oligoflexia 0.000138 0.067 0.26 0.169 0.886 Aquificae 0.000176 0.506 0.073 0.041 0.512 Ktedonobacteria 0.147 0.884 0.629 0.958 0.987 Chloroflexia 0.002 0.007 0.116 0.738 0.707 Gammaproteobacteria 6.85E-05 4.51E-09 0.029 3.93E-06 0.096 Thermoanaerobaculia 8.15E-06 0.008 0.116 0.000544 0.705 Chlamydiia 0.742 0.07 0.348 0.694 0.507 Flavobacteriia 0.000194 0.000115 0.321 0.000247 0.722 Fibrobacteria 2.64E-05 1.11E-10 0.374 6.77E-05 0.116 Bacteroidia 9.92E-06 0.211 0.729 0.085 0.198 Spirochaetia 0.235 0.001 0.08 0.216 0.473 Cytophagia 2.69E-05 2.00E-09 0.674 0.356 0.588 Rubrobacteria 0.00031 0.025 0.058 0.27 0.227 Fimbriimonadia 0.399 6.21E-07 0.084 0.655 0.53 Fusobacteriia 0.000257 0.000109 0.454 0.016 0.559 Blastocatellia 0.037 1.14E-05 5.65E-05 0.000695 0.112 Candidatus Brocadiae 0.036 0.909 0.229 0.476 0.796 Gemmatimonadetes 5.36E-07 0.18 0.121 0.401 0.009 Acidimicrobiia 0.219 0.153 0.8 0.438 0.271 Nitrospira 3.40E-07 0.028 0.259 0.324 0.45 Verrucomicrobiae 0.029 0.01 0.976 0.045 0.515 Rhodothermia 0.042 0.185 0.603 0.323 0.14 Anaerolineae 0.098 0.043 0.641 0.065 0.457 Thermomicrobia 0.019 0.029 0.427 0.176 0.176 Ardenticatenia 0.007 0.44 0.771 0.786 0.005 Vicinamibacteria 0.028 0.174 0.238 0.429 0.017 Chthonomonadetes 0.999 0.004 0.762 0.993 0.347 Opitutae 0.005 1.87E-06 0.912 0.012 0.197 Caldilineae 4.91E-06 0.744 0.16 0.905 0.298 Thermoflexia 0.102 0.269 0.000371 0.026 0.052 Dehalococcoidia 0.902 0.659 0.369 0.704 0.419 Spartobacteria 0.421 0.001 0.065 6.32E-05 0.275 Negativicutes 0.07 0.896 0.704 0.547 0.666 Gloeobacteria 0.317 0.905 0.524 0.803 0.734 Holophagae 0.000923 0.141 0.56 0.005 0.605 Armatimonadia 0.05 0.439 0.386 0.831 0.09 Lentisphaeria 1.52E-05 0.921 0.002 0.881 8.77E-05 Agaricomycetes 0.587 0.197 0.257 0.919 0.255 Sordariomycetes 1.68E-05 1.01E-11 0.41 2.50E-06 0.463 Dothideomycetes 0.225 3.51E-05 0.346 0.355 0.386 Glomeromycetes 0.346 0.126 0.293 0.641 0.389 Eurotiomycetes 0.205 0.941 0.827 0.002 0.079 Mortierellomycetes 0.1 3.19E-05 0.486 0.12 0.272 Pezizomycetes 0.612 0.131 0.437 0.48 0.577 Orbiliomycetes 0.071 0.003 0.399 0.234 0.294 Dimargaritomycetes 4.67E-08 2.04E-06 0.474 9.41E-07 0.718 Leotiomycetes 0.109 0.002 0.383 0.764 0.595 Entomophthoromycetes 0.000587 0.004 0.007 0.31 0.008 Zoopagomycetes 0.006 0.002 0.741 0.006 0.309 Chytridiomycetes 0.374 0.021 0.61 0.842 0.507 Basidiobolomycetes 0.004 0.000354 0.446 0.004 0.216 Blastocladiomycetes 0.235 0.04 0.344 0.22 0.865 p treat:loc p time:treat:loc F time F treat F loc F time:treat 0.781 0.674 11.227 0.959 6.282 1.516 0.45 0.593 2.944 1.859 12.79 0.595 0.294 0.225 20.635 3.011 3.342 0.257 0.162 0.441 2.293 0.625 0.879 0.667 0.91 0.468 1.819 1.992 0.09 0.286 0.117 0.692 2.559 0.282 21.431 0.782 0.795 0.349 9.257 39.672 0.379 16.873 0.657 0.915 11.021 0.033 0.775 0.406 0.902 0.699 14.71 9.855 1.805 2.163 0.984 0.532 9.202 1.613 0.93 2.512 0.608 0.02 3.682 8.544 7.069 0.487 0.344 0.155 1.878 2.117 1.741 2.703 0.038 0.369 18.995 39.177 1.177 4.964 0.19 0.05 21.749 1.945 0.136 1.392 0.501 0.445 29.937 6.646 5.977 1.12 0.422 0.212 11.055 0.391 4.445 3.6 0.028 0.006 6.466 6.645 1.063 1.458 0.736 0.786 9.676 3.627 1.32 1.803 0.852 0.759 9.342 0.453 3.449 3.121 0.139 0.146 1.932 0.021 0.239 0.103 0.504 0.956 6.063 8.575 2.633 0.423 0.024 0.152 10.66 67.711 5.296 15.208 0.964 0.714 13.962 8.234 2.621 7.87 0.29 0.517 0.417 3.537 0.911 0.487 0.528 0.791 9.207 19.835 1.017 8.889 0.14 0.221 12.081 95.481 0.816 10.677 0.014 0.829 13.636 1.636 0.123 2.438 0.116 0.561 1.5 12.992 3.281 1.577 0.237 0.303 12.054 73.219 0.18 1.122 0.05 0.248 8.591 5.553 3.9 1.376 0.878 0.206 1.017 40.26 3.209 0.545 0.92 0.637 8.834 20.013 0.575 4.051 0.007 0.126 3.235 27.947 22.199 7.565 0.458 0.02 3.255 0.013 1.508 0.853 0.916 0.346 18.939 1.884 2.548 1.013 0.196 0.278 1.563 2.157 0.065 0.931 0.907 0.146 19.869 5.351 1.327 1.209 0.226 0.938 3.45 7.559 0.000903 3.029 0.696 0.405 3.1 1.843 0.277 1.212 0.14 0.465 2.302 4.457 0.222 2.684 0.964 0.016 3.864 5.298 0.65 1.766 0.769 0.82 4.921 0.613 0.086 0.355 0.791 0.776 3.488 1.946 1.454 0.951 0.784 0.327 0.006 9.53 0.094 0.029 0.315 0.604 5.37 35.301 0.012 4.339 0.868 0.455 14.821 0.109 2.082 0.187 0.184 0.007 2.263 1.271 16.221 3.586 0.083 0.46 0.191 0.199 0.833 0.472 0.058 0.103 0.969 13.065 3.691 10.777 0.862 0.168 2.613 0.017 0.147 0.723 0.374 0.582 1.229 0.014 0.415 0.331 0.059 0.15 7.218 2.29 0.347 5.331 0.379 0.568 2.934 0.615 0.774 0.292 0.833 0.947 12.943 0.01 11.441 0.221 0.87 0.494 0.654 1.743 1.337 0.166 0.256 0.545 12.786 117.698 0.698 16.012 0.819 0.313 1.539 23.842 0.918 1.126 0.562 0.087 1.148 2.476 1.147 0.568 0.143 0.098 1.628 0.006 0.049 6.483 0.421 0.206 2.283 24.182 0.499 2.117 0.625 0.456 0.613 2.416 0.622 0.846 0.499 0.483 2.605 10.541 0.732 1.507 0.789 0.814 24.265 34.919 0.527 17.834 0.48 0.089 2.205 11.719 0.783 0.386 0.782 0.01 7.774 9.503 8.305 1.25 0.797 0.385 5.074 11.203 0.111 5.089 0.527 0.57 1.077 5.974 0.266 0.277 0.426 0.235 5.449 16.359 0.598 5.596 0.359 0.863 1.5 4.61 0.924 1.561 F time:loc F treat:loc F time:treat:loc 0.171 0.079 0.517 3.382 0.586 0.643 2.997 1.142 1.54 0.458 2.057 0.926 1.557 0.013 0.87 1.898 2.617 0.489 1.106 0.069 1.141 0.514 0.201 0.171 0.403 0.015 0.48 2.141 0.000401 0.749 1.07 0.268 3.828 2.791 0.924 1.879 5.306 4.729 1.091 1.784 1.802 2.931 0.79 0.465 0.917 7.161 0.664 1.595 0.545 5.336 5.137 0.214 0.116 0.354 0.785 0.035 0.393 0.044 2.317 1.932 0.468 0.459 0.105 2.321 5.678 1.897 0.47 0.002 0.457 0.795 1.161 0.775 0.446 0.409 0.348 2.149 2.303 1.557 1.659 6.795 0.294 0.859 2.627 0.697 0.652 1.456 1.27 1.533 4.169 1.454 0.753 0.024 1.622 0.702 0.01 0.573 2.18 8.264 2.068 0.341 0.566 3.812 4.657 0.011 1.149 1.371 1.752 1.348 0.906 0.014 1.932 0.78 1.53 0.135 1.974 0.156 1.004 0.892 2.297 0.876 1.766 0.002 4.04 5.261 0.088 0.307 3.997 0.072 0.369 1.147 0.077 1.2 1.66 1.045 0.626 1.285 0.028 0.897 2.904 1.852 4.961 0.974 3.227 0.887 1.359 3.905 2.254 0.529 0.031 1.806 0.429 0.814 0.662 0.624 3.855 1.91 2.384 0.797 0.686 10.306 0.045 0.121 1.426 0.027 0.818 0.881 1.342 0.726 1.049 0.054 1.241 1.041 0.343 2.41 2.503 2.27 2.298 1.37 0.666 1.62 0.67 0.244 0.895 1.297 0.469 0.84 0.452 0.073 0.316 0.641 0.513 2.393 4.757 0.078 4.561 1.252 0.067 1.051 0.795 0.409 0.682 1.578 0.652 1.503 0.244 0.869 0.246 Supplementary table S3 Order p time p treat p loc p time:treat p time:loc p treat:loc p time:treat:loc Rhizobiales 0.044 0.393 0.168 0.165 0.847 0.584 0.928 Nitrososphaerales 0.049 0.183 0.001 0.623 0.031 0.45 0.593 Geodermatophilales 2.91E-08 0.098 0.000474 0.177 0.182 0.955 0.397 Bacillales 0.099 0.435 0.356 0.579 0.714 0.162 0.441 Propionibacteriales 0.000398 8.67E-05 0.171 0.644 0.695 0.147 0.099 Caudovirales 0.166 0.169 0.766 0.835 0.221 0.91 0.468 Burkholderiales 0.07 0.734 0.00012 0.453 0.204 0.123 0.605 Chitinophagales 0.000187 7.04E-07 0.543 1.56E-06 0.362 0.795 0.349 Acidobacteriales 0.001 0.002 0.000146 0.386 0.4 0.126 0.753 Chlorobiales 5.23E-06 0.004 0.19 0.114 0.752 0.902 0.699 Rhodospirillales 0.000625 0.115 0.000258 0.501 0.459 0.849 0.524 Sphingobacteriales 0.000195 0.214 0.343 0.078 0.117 0.984 0.532 Sphingomonadales 1.52E-11 0.086 0.288 0.006 0.139 0.51 0.212 Planctomycetales 0.001 0.017 0.013 0.515 0.713 0.318 0.028 Micromonosporales 0.002 0.419 0.638 0.009 0.076 0.641 0.732 Pseudonocardiales 0.005 0.000448 0.144 0.822 3.30E-05 0.539 0.036 Halanaerobiales 0.007 0.32 0.738 0.05 0.662 0.662 0.94 Micrococcales 0.000574 0.815 0.135 0.298 0.337 0.033 0.104 Myxococcales 6.99E-07 6.91E-06 0.556 0.013 0.078 0.413 0.823 Saprospirales 1.41E-07 0.174 0.714 0.265 0.172 0.19 0.05 Corynebacteriales 1.62E-09 0.015 0.001 0.739 0.045 0.611 0.395 Frankiales 5.71E-08 1.59E-05 0.195 0.909 0.747 0.652 0.677 Gemmatales 0.305 0.032 0.582 0.651 0.076 0.802 0.092 Solirubrobacterales 5.10E-09 0.015 0.021 0.357 0.509 0.501 0.445 Bryobacterales 0.057 0.824 0.252 0.745 0.18 0.176 0.61 Methanosarcinales 3.45E-05 0.383 0.05 0.012 0.002 0.409 0.306 Streptomycetales 2.49E-05 0.000503 0.000533 9.45E-05 6.68E-05 0.002 0.000809 Deinococcales 0.002 0.015 0.311 0.246 0.656 0.028 0.006 Bacteriovoracales 2.13E-06 0.646 0.005 0.986 0.042 0.918 0.943 Caulobacterales 0.008 1.90E-06 0.041 2.62E-06 0.016 0.019 0.439 Aquificales 0.000176 0.506 0.073 0.041 0.512 0.852 0.759 Bdellovibrionales 0.03 0.047 0.963 0.136 0.932 0.707 0.87 Ktedonobacterales 0.141 0.953 0.694 0.981 0.997 0.11 0.162 Nostocales 0.000417 0.739 8.66E-06 0.399 0.55 0.645 0.738 Catenulisporales 0.258 0.998 0.038 0.057 0.000292 0.159 0.245 Chloroflexales 0.002 0.007 0.116 0.738 0.707 0.504 0.956 Cellvibrionales 2.04E-06 2.99E-08 0.044 1.39E-06 0.108 0.028 0.193 Chromatiales 0.016 2.94E-06 0.114 0.005 0.9 0.203 0.455 Xanthomonadales 0.791 0.003 0.417 0.799 0.365 0.28 0.689 Isosphaerales 0.078 0.015 0.017 0.943 0.443 0.891 0.097 Alteromonadales 0.093 0.001 0.237 0.612 0.446 0.705 0.259 Thermoanaerobaculales 8.15E-06 0.008 0.116 0.000544 0.705 0.964 0.714 Parachlamydiales 0.708 0.077 0.336 0.664 0.524 0.277 0.54 Chlamydiales 0.826 0.053 0.39 0.775 0.459 0.341 0.456 Oscillatoriales 2.19E-05 0.351 1.25E-05 0.596 0.694 0.402 0.207 Flavobacteriales 0.000194 0.000115 0.321 0.000247 0.722 0.528 0.791 Fibrobacterales 2.64E-05 1.11E-10 0.374 6.77E-05 0.116 0.14 0.221 Bacteroidales 9.92E-06 0.211 0.729 0.085 0.198 0.014 0.829 Leptospirales 0.232 0.001 0.085 0.219 0.493 0.121 0.574 Cytophagales 2.69E-05 2.00E-09 0.674 0.356 0.588 0.237 0.303 Gaiellales 0.00031 0.025 0.058 0.27 0.227 0.05 0.248 Nitrosomonadales 0.052 0.408 0.000135 0.747 0.976 0.121 0.557 Fimbriimonadales 0.399 6.21E-07 0.084 0.655 0.53 0.878 0.206 Syntrophobacterales 0.000355 0.007 0.019 0.502 0.234 0.925 0.747 Nevskiales 0.696 0.015 0.096 0.282 0.63 0.349 0.785 Fusobacteriales 0.000257 0.000109 0.454 0.016 0.559 0.92 0.637 Methylococcales 1.87E-07 0.643 0.262 0.083 0.183 0.587 0.497 Synechococcales 1.00E-06 0.692 8.04E-05 0.057 0.823 0.376 0.005 Candidatus Brocadiales 0.036 0.909 0.229 0.476 0.796 0.458 0.02 Kineosporiales 3.28E-05 0.007 0.003 0.635 0.274 0.274 0.161 Actinomycetales 0.149 0.165 0.77 0.717 0.002 0.072 0.01 Nakamurellales 0.172 0.017 0.017 0.052 0.04 0.676 0.308 Pseudomonadales 0.238 0.811 0.852 0.051 0.024 0.027 0.389 Gemmatimonadales 5.36E-07 0.18 0.121 0.401 0.009 0.916 0.346 Acidimicrobiales 0.219 0.153 0.8 0.438 0.271 0.196 0.278 Streptosporangiales 0.448 0.171 0.017 0.405 0.462 0.776 0.487 Nitrospirales 3.40E-07 0.028 0.259 0.324 0.45 0.907 0.146 Desulfuromonadales 0.239 0.071 0.147 0.124 0.087 0.243 0.19 Rhodocyclales 0.411 0.019 0.855 0.13 0.049 0.791 0.098 Clostridiales 0.164 0.154 0.2 0.061 0.059 0.343 0.156 Pirellulales 0.009 0.825 0.09 0.88 0.989 0.511 0.04 Verrucomicrobiales 0.029 0.01 0.976 0.045 0.515 0.226 0.938 Rhodothermales 0.042 0.185 0.603 0.323 0.14 0.696 0.405 Ardenticatenales 0.057 0.985 0.637 0.329 0.073 0.146 0.558 Blastocatellales 0.002 0.531 0.311 0.796 0.821 0.714 0.353 Chthonomonadales 0.999 0.004 0.762 0.993 0.347 0.784 0.327 Caldilineales 4.91E-06 0.744 0.16 0.905 0.298 0.868 0.455 Thermoflexales 0.102 0.269 0.000371 0.026 0.052 0.184 0.007 Sphaerobacterales 0.017 0.054 0.131 0.107 0.175 0.821 0.28 Chthoniobacterales 0.421 0.001 0.065 6.32E-05 0.275 0.058 0.103 Oceanospirillales 2.88E-05 0.895 0.962 0.526 0.842 0.642 0.481 Thiotrichales 0.055 0.035 0.322 0.032 0.644 0.347 0.556 Veillonellales 0.073 0.251 0.141 0.869 0.205 0.601 0.301 Neisseriales 0.235 0.345 0.011 0.595 0.128 0.132 0.777 Anaerolineales 0.058 0.811 0.8 0.1 0.279 0.055 0.176 Gloeobacterales 0.317 0.905 0.524 0.803 0.734 0.374 0.582 Holophagales 0.000923 0.141 0.56 0.005 0.605 0.059 0.15 Capsulimonadales 0.05 0.439 0.386 0.831 0.09 0.379 0.568 Acidiferrobacterales 4.07E-05 0.377 0.012 0.055 0.282 0.642 0.751 Opitutales 0.005 1.44E-06 0.82 0.014 0.209 0.38 0.67 Selenomonadales 0.148 0.176 0.176 0.059 0.063 0.292 0.161 Spirochaetales 0.299 0.098 0.122 0.199 0.202 0.173 0.335 Thermogemmatisporales 1.41E-09 1.11E-06 6.12E-07 5.02E-13 2.17E-12 8.07E-10 2.21E-15 Chroococcales 0.017 0.211 0.603 0.313 0.108 0.473 0.923 Rhodobacterales 0.558 0.062 0.000976 0.274 0.998 0.777 0.573 Enterobacterales 6.42E-08 0.912 0.406 0.95 0.628 0.449 0.536 Methanomicrobiales 1.74E-06 0.051 0.801 0.005 0.283 0.672 0.121 Desulfobacterales 0.055 0.914 0.075 0.954 0.081 0.105 0.498 Thermomicrobiales 0.026 0.27 0.102 0.47 0.582 0.321 0.016 Sporichthyales 2.10E-05 0.308 0.029 0.676 0.003 0.444 0.734 Lentisphaerales 1.52E-05 0.921 0.002 0.881 8.77E-05 0.833 0.947 Auriculariales 0.504 0.216 0.366 0.436 0.479 0.307 0.423 Sordariales 1.70E-05 1.48E-11 0.372 3.06E-06 0.412 0.2 0.562 Pleosporales 0.373 1.27E-05 0.074 0.684 0.71 0.715 0.524 Glomerales 0.798 0.181 0.536 0.972 0.43 0.875 0.197 Diversisporales 0.477 0.461 0.425 0.377 0.503 0.358 0.55 Onygenales 0.205 0.941 0.827 0.002 0.079 0.143 0.098 Gloeophyllales 0.425 0.571 0.078 0.852 0.461 0.599 0.794 Polyporales 0.334 0.215 0.248 0.345 0.354 0.257 0.357 Agaricales 0.728 0.922 0.067 0.706 0.596 0.923 0.69 Coniochaetales 2.70E-05 0.000533 0.000404 3.89E-06 2.13E-06 0.000152 6.09E-07 Mortierellales 0.1 3.19E-05 0.486 0.12 0.272 0.421 0.206 Pezizales 0.612 0.131 0.437 0.48 0.577 0.625 0.456 Orbiliales 0.071 0.003 0.399 0.234 0.294 0.499 0.483 Dimargaritales 4.67E-08 2.04E-06 0.474 9.41E-07 0.718 0.789 0.814 Helotiales 0.297 0.003 0.377 0.842 0.487 0.575 0.167 Entomophthorales 0.000587 0.004 0.007 0.31 0.008 0.782 0.01 Xylariales 0.046 0.067 0.358 0.961 0.751 0.559 0.533 Erysiphales 8.34E-06 0.005 0.649 0.052 0.302 0.247 0.005 Zoopagales 0.006 0.002 0.741 0.006 0.309 0.797 0.385 Corticiales 0.068 0.061 0.311 0.068 0.304 0.301 0.307 Chytridiales 0.374 0.021 0.61 0.842 0.507 0.527 0.57 Basidiobolales 0.004 0.000354 0.446 0.004 0.216 0.426 0.235 Hypocreales 0.006 0.188 0.202 0.138 0.236 0.911 0.532 Blastocladiales 0.235 0.04 0.344 0.22 0.865 0.359 0.863 F time F treat F loc F time:treat F time:loc F treat:loc F time:treat:loc 3.051 0.751 1.997 1.825 0.269 0.307 0.151 2.944 1.859 12.79 0.595 3.382 0.586 0.643 25.407 2.932 15.501 1.761 1.734 0.003 1.022 2.293 0.625 0.879 0.667 0.458 2.057 0.926 8.265 20.769 1.973 0.563 0.485 2.223 2.295 1.819 1.992 0.09 0.286 1.557 0.013 0.87 2.615 0.118 19.716 0.9 1.628 2.52 0.624 9.257 39.672 0.379 16.873 1.106 0.069 1.141 6.9 11.227 19.078 1.049 1.015 2.488 0.402 14.71 9.855 1.805 2.163 0.403 0.015 0.48 7.697 2.634 17.31 0.806 0.887 0.037 0.763 9.202 1.613 0.93 2.512 2.141 0.000401 0.749 49.66 3.156 1.171 5.085 1.98 0.444 1.597 6.87 6.353 7.052 0.78 0.459 1.031 3.512 6.446 0.671 0.226 4.686 2.537 0.222 0.432 5.373 15.667 2.258 0.304 11.74 0.386 3.26 4.859 1.024 0.114 2.932 0.535 0.195 0.132 7.802 0.056 2.366 1.286 1.173 5.025 2.248 18.414 29.9 0.355 4.257 2.514 0.689 0.303 21.749 1.945 0.136 1.392 1.784 1.802 2.931 33.229 6.669 13.316 0.421 3.042 0.265 1.027 23.795 26.717 1.759 0.179 0.41 0.208 0.513 1.266 5.068 0.309 0.551 2.538 0.064 2.357 29.937 6.646 5.977 1.12 0.79 0.465 0.917 2.814 0.05 1.365 0.413 1.744 1.925 0.617 11.671 0.783 4.192 4.386 6.319 0.703 1.262 12.17 15.332 15.165 10.201 10.696 11.692 7.378 6.466 6.645 1.063 1.458 0.545 5.336 5.137 16.303 0.215 9.446 0.046 3.097 0.011 0.128 4.811 35.24 4.583 15.922 4.075 6.199 0.93 9.342 0.453 3.449 3.121 0.785 0.035 0.393 3.417 4.316 0.002 1.999 0.145 0.145 0.236 1.968 0.003 0.158 0.058 0.016 2.719 1.839 8.209 0.113 29.018 1.018 0.716 0.217 0.423 1.417 9.43E-06 4.708 2.817 8.668 2.088 1.465 6.063 8.575 2.633 0.423 0.468 0.459 0.105 16.378 56.047 4.413 17.092 2.21 5.368 1.681 4.081 33.372 2.656 5.364 0.193 1.699 0.896 0.348 10.311 0.678 0.336 1.101 1.212 0.495 2.51 6.649 6.445 0.128 0.92 0.019 2.316 2.35 12.711 1.461 0.614 0.914 0.146 1.414 13.962 8.234 2.621 7.87 0.47 0.002 0.457 0.467 3.351 0.955 0.531 0.763 1.229 0.734 0.299 4.068 0.762 0.37 0.887 0.937 0.894 12.372 0.9 27.597 0.639 0.486 0.723 1.619 9.207 19.835 1.017 8.889 0.446 0.409 0.348 12.081 95.481 0.816 10.677 2.149 2.303 1.557 13.636 1.636 0.123 2.438 1.659 6.795 0.294 1.514 13.046 3.179 1.565 0.821 2.55 0.676 12.054 73.219 0.18 1.122 0.652 1.456 1.27 8.591 5.553 3.9 1.376 1.533 4.169 1.454 2.898 0.704 19.335 0.41 0.068 2.558 0.704 1.017 40.26 3.209 0.545 0.753 0.024 1.622 8.414 8.316 6.147 0.804 1.505 0.009 0.41 0.483 6.655 2.968 1.334 0.584 0.906 0.356 8.834 20.013 0.575 4.051 0.702 0.01 0.573 21.128 0.219 1.307 2.452 1.73 0.302 0.813 17.712 0.16 21.016 2.817 0.303 0.807 5.195 3.255 0.013 1.508 0.853 0.341 0.566 3.812 11.748 8.395 10.304 0.577 1.36 1.242 1.846 1.919 2.028 0.087 0.453 6.221 3.494 4.561 1.787 6.397 6.409 2.905 3.143 0.178 1.256 1.489 0.058 0.035 2.92 3.661 5.461 1.042 18.939 1.884 2.548 1.013 4.657 0.011 1.149 1.563 2.157 0.065 0.931 1.371 1.752 1.348 0.91 1.968 6.383 1.005 0.881 0.082 0.832 19.869 5.351 1.327 1.209 0.906 0.014 1.932 1.486 3.526 2.224 2.086 2.412 1.422 1.692 0.991 6.205 0.034 2.041 2.948 0.072 2.305 1.828 2.144 1.722 2.751 2.782 0.928 1.877 4.707 0.05 3.068 0.223 0.039 0.442 3.156 3.45 7.559 0.000903 3.029 0.78 1.53 0.135 3.1 1.843 0.277 1.212 1.974 0.156 1.004 2.817 0.000374 0.228 1.195 2.572 2.232 0.702 6.323 0.402 1.063 0.341 0.306 0.137 1.13 0.006 9.53 0.094 0.029 1.147 0.077 1.2 14.821 0.109 2.082 0.187 1.285 0.028 0.897 2.263 1.271 16.221 3.586 2.904 1.852 4.961 4.007 4.021 2.415 2.221 1.769 0.052 1.342 0.969 13.065 3.691 10.777 1.359 3.905 2.254 11.946 0.018 0.002 0.76 0.276 0.221 0.844 2.85 4.914 1.016 3.365 0.563 0.913 0.706 2.579 1.371 2.288 0.239 1.625 0.28 1.275 1.5 0.923 7.46 0.641 2.055 2.408 0.368 2.795 0.058 0.065 2.279 1.345 3.983 1.764 1.229 0.014 0.415 0.331 0.429 0.814 0.662 7.218 2.29 0.347 5.331 0.624 3.855 1.91 2.934 0.615 0.774 0.292 2.384 0.797 0.686 11.423 0.804 7.146 2.84 1.337 0.221 0.404 5.246 36.449 0.053 4.201 1.607 0.796 0.523 1.922 1.922 1.922 2.777 2.714 1.153 1.846 1.283 2.923 2.533 1.653 1.64 1.947 1.179 33.644 37.602 40.33 65.499 58.246 79.736 99.749 3.978 1.636 0.276 1.24 2.213 0.528 0.159 0.703 3.781 13.459 1.363 0.011 0.081 0.677 23.521 0.012 0.713 0.116 0.588 0.59 0.741 16.673 4.138 0.065 5.293 1.331 0.183 2.104 2.847 0.012 3.4 0.109 2.475 2.809 0.811 3.559 1.264 2.845 0.865 0.662 1.02 4.078 12.438 1.079 5.263 0.514 5.845 0.603 0.428 12.943 0.01 11.441 0.221 10.306 0.045 0.121 0.8 1.601 0.844 0.937 0.848 1.083 0.965 12.771 113.874 0.823 15.646 0.989 1.719 0.697 1.08 27.548 3.439 0.502 0.463 0.136 0.764 0.338 1.879 0.392 0.076 0.948 0.025 1.664 0.851 0.559 0.655 1.069 0.801 0.874 0.716 1.628 0.006 0.049 6.483 2.503 2.27 2.298 0.96 0.328 3.327 0.263 0.884 0.282 0.344 1.18 1.608 1.393 1.15 1.129 1.335 1.12 0.437 0.01 3.608 0.47 0.639 0.01 0.493 12.046 15.165 15.972 15.226 16.299 18.955 18.685 2.283 24.182 0.499 2.117 1.37 0.666 1.62 0.613 2.416 0.622 0.846 0.67 0.244 0.895 2.605 10.541 0.732 1.507 1.297 0.469 0.84 24.265 34.919 0.527 17.834 0.452 0.073 0.316 1.289 10.334 0.804 0.276 0.833 0.321 1.814 7.774 9.503 8.305 1.25 4.757 0.078 4.561 3.018 3.619 0.872 0.097 0.404 0.349 0.747 13.923 9.458 0.211 2.888 1.273 1.397 5.378 5.074 11.203 0.111 5.089 1.252 0.067 1.051 2.638 3.785 1.065 2.648 1.268 1.109 1.259 1.077 5.974 0.266 0.277 0.795 0.409 0.682 5.449 16.359 0.598 5.596 1.578 0.652 1.503 5.172 1.817 1.706 1.988 1.497 0.013 0.748 1.5 4.61 0.924 1.561 0.244 0.869 0.246 Supplementary table S4 Multiple Comparisons of Means: Tukey Contrasts Adjusted p values reported -- single-step method

Estimate Std. Error t value Pr(>|t|) M.Litter - C.Litter == 0 7415.7 231.7 32.005 <0.001 *** S.Litter - C.Litter == 0 9669.8 231.7 41.734 <0.001 *** C.NoLitter - C.Litter == 0 -117.5 234.3 -0.501 0.996 M.NoLitter - C.Litter == 0 6664.9 234.3 28.444 <0.001 *** S.NoLitter - C.Litter == 0 8080.9 234.3 34.487 <0.001 *** S.Litter - M.Litter == 0 2254.1 231.7 9.729 <0.001 *** C.NoLitter - M.Litter == 0 -7533.1 234.3 -32.149 <0.001 *** M.NoLitter - M.Litter == 0 -750.7 234.3 -3.204 0.0208 * S.NoLitter - M.Litter == 0 665.2 234.3 2.839 0.0578 . C.NoLitter - S.Litter == 0 -9787.2 234.3 -41.769 <0.001 *** M.NoLitter - S.Litter == 0 -3004.9 234.3 -12.824 <0.001 *** S.NoLitter - S.Litter == 0 -1588.9 234.3 -6.781 <0.001 *** M.NoLitter - C.NoLitter == 0 6782.4 236.9 28.629 <0.001 *** S.NoLitter - C.NoLitter == 0 8198.3 236.9 34.606 <0.001 *** S.NoLitter - M.NoLitter == 0 1415.9 236.9 5.977 <0.001 *** --- Signif. co des: 0 ‘***’ 0. 1 ‘**’ 0. 1 ‘*’ 0.05 Dunn (1964) Kruskal-Wallis multiple comparison p-values adjusted with the Benjamini-Hochberg method.

Comparison Z C.Litter - C.NoLitter 0.4421944 C.Litter - M.Litter -4.8663306 C.NoLitter - M.Litter -5.2541509 C.Litter - M.NoLitter -3.384397 C.NoLitter - M.NoLitter -3.7847695 M.Litter - M.NoLitter 1.4275595 C.Litter - S.Litter -8.1645795 C.NoLitter - S.Litter -8.5155467 M.Litter - S.Litter -3.2982489 M.NoLitter - S.Litter -4.6889553 C.Litter - S.NoLitter -5.9328601 C.NoLitter - S.NoLitter -6.3053797 M.Litter - S.NoLitter -1.1209036 M.NoLitter - S.NoLitter -2.5206102 S.Litter - S.NoLitter 2.1404922

‘.’ 0.1 ‘ ’ 1 Dunn (1964) Kruskal-Wallis multiple comparison p-values adjusted with the Benjamini-Hochberg method.

P.unadj P.adj 6.58E-01 6.58E-01 1.14E-06 2.84E-06 1.49E-07 4.46E-07 7.13E-04 1.19E-03 1.54E-04 2.88E-04 1.53E-01 1.77E-01 3.23E-16 2.42E-15 1.66E-17 2.49E-16 9.73E-04 1.46E-03 2.75E-06 5.88E-06 2.98E-09 1.12E-08 2.87E-10 1.44E-09 2.62E-01 2.81E-01 1.17E-02 1.60E-02 3.23E-02 4.04E-02 Supplementary figureS1

H1LitterRhizo

H1LitterBulk

H1NoLitterRhizo

H2LitterRhizo

H2LitterBulk

H2NoLitterRhizo

H3LitterRhizo

H3LitterBulk

H3NoLitterRhizo

H4LitterRhizo

H4LitterBulk

H4NoLitterRhizo Supplementary figure S2

0 2 4 6 8 log normalized counts

Cyanobacteria Verrucomicrobia * Firmicutes Euryarchaeota Ascomycota * Gemmatimonadetes Thaumarchaeota Planctomycetes Chloroflexi Bacteroidetes * Proteobacteria * Actinobacteria Acidobacteria Armatimonadetes * Candidatus Rokubacteria Deinococcus−Thermus * Nitrospirae Aquificae Uroviricota Chlorobi Fibrobacteres * Spirochaetes * Chlamydiae * Zoopagomycota * Mucoromycota * Candidatus Poribacteria candidate division NC10 Basidiomycota Candidatus Dormibacteraeota Candidatus Bathyarchaeota candidate division WOR−3 Fusobacteria * Candidatus Aureabacteria Chytridiomycota * Calditrichaeota Cryptomycota Blastocladiomycota * Candidatus Aerophobetes Elusimicrobia * Rhodothermaeota Candidatus Roizmanbacteria Lentisphaerae Time (d) 3 6 12 22 3 6 12 22 3 6 12 22 3 6 12 22 Supplementary figure S3

0 2 4 6 8 log normalized counts

Blastocatellia Vicinamibacteria Verrucomicrobiae Anaerolineae Ktedonobacteria Saprospiria Gemmatimonadetes Aquificae Nitrospira Cytophagia Dothideomycetes Opitutae Mortierellomycetes Flavobacteriia Deinococci Leotiomycetes Clostridia Caudoviricetes Oligoflexia Sphingobacteriia Rubrobacteria Chloroflexia Thermomicrobia Caldilineae Sordariomycetes Dehalococcoidia Armatimonadia Spartobacteria Fusobacteriia Fimbriimonadia Entomophthoromycetes Chlorobia Acidimicrobiia Holophagae Fibrobacteria Spirochaetia Chlamydiia Pezizomycetes Glomeromycetes Orbiliomycetes Ardenticatenia Negativicutes Candidatus Brocadiae Rhodothermia Gloeobacteria Thermoflexia * Blastocladiomycetes Thermoanaerobaculia Eurotiomycetes Chytridiomycetes Chthonomonadetes Basidiobolomycetes Dimargaritomycetes Lentisphaeria Bacteroidia Zoopagomycetes Agaricomycetes Nitrososphaeria Planctomycetia Thermoleophilia Deltaproteobacteria * Alphaproteobacteria Actinobacteria Betaproteobacteria * Chitinophagia Gammaproteobacteria Acidobacteriia Bacilli Methanomicrobia Time (d) 3 6 12 22 3 6 12 22 3 6 12 22 3 6 12 22 Supplementary figure S4

0 2 4 6 8 log normalized counts Blastocatellia Vicinamibacteria Verrucomicrobiae Anaerolineae Ktedonobacteria Saprospiria Gemmatimonadetes Aquificae Nitrospira Cytophagia Dothideomycetes Opitutae Mortierellomycetes Flavobacteriia Deinococci Leotiomycetes Clostridia Caudoviricetes Oligoflexia Sphingobacteriia Rubrobacteria Chloroflexia Thermomicrobia Caldilineae Sordariomycetes Dehalococcoidia Armatimonadia Spartobacteria Fusobacteriia Fimbriimonadia Entomophthoromycetes Chlorobia Acidimicrobiia Holophagae Fibrobacteria Spirochaetia Chlamydiia Pezizomycetes Glomeromycetes Orbiliomycetes Ardenticatenia Negativicutes Candidatus Brocadiae Rhodothermia Gloeobacteria Thermoflexia Blastocladiomycetes Thermoanaerobaculia Eurotiomycetes Chytridiomycetes Chthonomonadetes Basidiobolomycetes Dimargaritomycetes Lentisphaeria Bacteroidia Zoopagomycetes Agaricomycetes Nitrososphaeria Planctomycetia Thermoleophilia Deltaproteobacteria Alphaproteobacteria Actinobacteria Betaproteobacteria Chitinophagia Gammaproteobacteria Acidobacteriia Bacilli Methanomicrobia Time (d) 3 6 12 22 3 6 12 22 3 6 12 22 3 6 12 22 Supplementary figure S5

GCF 000196355.1 Nitrosospira multiformis ATCC 25196

GCF 000145255.1 Gallionella capsiferriformans ES-2

GCF 000297055.2 Sulfuricella denitrificans skB26 GCF 000025705.1 Sideroxydans lithotrophicus ES-1

GCF 000355765.4 Nitrosospira lacus APG3 GCF 000974685.2 Ferriphaselus amnicola OYT1 TCC 19718

A GCF 000023745.1 Methylovorus glucosotrophus SIP3-4 GCF 000093025.1 Methylotenera versatilis 301 GCF 000012745.1 GCF 000023705.1 Methylotenera mobilis J

GCF 000818035.1 Neisseria elongata

Thiobacillus denitrificans A GCF 000196295.1 Neisseria lactamica 020-06 GCF 900086555.1 Neisseria weaveri NCTC13585

Azospira oryzae PS

GCF 000021025.1GCF Laribacter000600005.1 hongkongensis Snodgrassella HLHK9 alvi wkB2 Aromatoleum aromaticum EbN1 GCF 000007705.1 Chromobacterium violaceum Azoarcus olearius DQS4

Thauera humireducens SgZ-1

GCF 000619905.2 Nitrosospira briensis C-128 GCF 001455205.1 Nitrosomonas ureae Nm10 TCC 25259 GCF 001007935.1 Nitrosomonas communis Nm2 GCF 000009145.1 Nitrosomonas europaea Thauera chlorobenzoica 3CB1 A L GCF 000014765.1 Nitrosomonas eutropha C91 TCC 29315 W8 GCF 000012425.1 Dechloromonas aromatica RCB GCF 0000 GCF 000236665.1 GCF 000828635.1 Sulfuritalea hydrogenivorans DSM 22779 GCF 000025965.1 er91 GCF 001682385.1 T 11365.1 GCF 001051995.2 GCF 001922305.1 Tree scale: 0.1 GCF 002127965.1 Oxalobacter formigenes HC-1 Alpha Outgroup A TCC 12472 GCF 000723165.1 Janthinobacterium agaricidamnosum DSM 9628 GCF 001941825.1 Massilia putida 6NM-7 GCF 001955735.1 Rhodoferax antarcticus DSMZ24876 GCF 000026125.1 Herminiimonas arsenicoxydans A-1 GCF 001584185.1 Collimonas pratensis LW-P1DMW GCF 000013605.1 Rhodoferax ferrireducens DSM 15236 GCF 001040945.1 Herbaspirillum seropedicae Z67 GCF 001267925.1 Herbaspirillum hiltneri N3 GCF 001955715.1 Rhodoferax saidenbachensis DSM 22694 GCF 000973625.1 Polynucleobacter duraquae MWH-MoK4 GCF 000016345.1 Polynucleobacter asymbioticus Q

GCF 000015505.1 Polaromonas naphthalenivorans CJ2 GCF 000019745.1 Polynucleobacter necessarius STIR1 GCF 000009125.1 Ralstonia solanacearum GMI1000 GCF 000020205.1 Ralstonia pickettii 12J GCF 000184745.1 Variovorax paradoxus EPS GCF 000954135.1 Ralstonia mannitolilytica SN82F48 GCF 001580455.1 Ramlibacter tataouinensis 5-10 GCF 001281465.1 Cupriavidus gilardii CR3 TTB310 GCF 000832305.1 Cupriavidus basilensis 4G11 GCF 000215705.1 Ramlibacter tataouinensis GCF 000196015.1 Cupriavidus metallidurans CH34 GCF 000219215.1 Cupriavidus necator N-1 GCF 000767615.3 Pandoraea pnomenusa DSM 16536 GCF 002214645.1 Diaphorobacter polyhydroxybutyrativorans Alicycliphilus denitrificansTCC SL-205 K60119860 GCF 001931675.1 Pandoraea thiooxydans TK102 GCF 000204645.1 Acidovorax avenae A GCF 000198775.1 Paraburkholderia rhizoxinica HKI 454 GCF 000020045.1 Paraburkholderia phymatum STM815 GCF 000176855.2 GCF 000013645.1 Paraburkholderia xenovorans LB400 GCF 001865575.1 Paraburkholderia sprentiae WSM5005 GCF 000739375.1 Comamonas testosteroni GCF 000959725.1 Burkholderia gladioli ATSB16 GCF 000959245.1 Burkholderia ubonensis MSMB22 GCF 000018665.1 Delftia acidovorans SPH-1 GCF 0014 GCF 000612685.1 Castellaniella defragrans 65Phen GCF 000967305.2 GCF 002056725.1Verminephrobacter Comamonas kerstersii eiseniae 8943EF01-2 GCF 002005365.1 Paenalcaligenes1 hominis microbial GCF 000521505.1 1495.1 Burkholderia cepacia UCB 717 GCF 000743945.1 Basilea psittacipulmonis DSM 24701 GCF 000226625.1 GCF 000276685.1 GCF 000319245.1 Candidatus Kinetoplastibacterium blastocrithidii GCF 900089455.2 Orrella dioscoreae GCF 001676705.1 Bordetella bronchialis GCF 000015565.1 TCC 15551 GCF 000067205.1 Bordetella petrii DSM 12804

70801CTCN snadixosolyx retcabomorhcA 1.574754100 FCG 1.574754100 retcabomorhcA snadixosolyx 70801CTCN

A Alcaligenes faecalis ZD02 TCC 10248 GCF 002158865.1 Comamonas serinivorans DSM 26136 TCC 15466 SM S39 Burkholderiales 62 29 AU7206 TCC 51541 Advenella mimigardefordensis DPN7 A

T

Taylorella equigenitalisaylorella A asinigenitalis MCE3

Vitreoscilla filiformis A GCF 000019785.1 Leptothrix cholodnii SP-6

116905.1 GCFRhizobacter 001017435.1 Polyangium gummiphilus brachysporum NS21 DSM 7029

GCF 000015725.1 Methylibium petroleiphilum PM1 Thiomonas intermedia A

GCF 002 GCF 002222655.1GCF 000284255.1 Rubrivivax gelatinosus IL144 GCF 001078275.1 Bordetella hinzii F582

TCC 35865

GCF 000070465.1 Bordetella avium 197N AU3182

119665.1 Bordetella genomosp 13

GCF 002028405.1 GCF 001483865.1 Roseateles depolymerans KCTC 42856 GCF 000612485.1 Bordetella holmesii

GCF 002 GCF 900078695.1 Bordetella trematum H044680328